data_5MNJ
#
_model_server_result.job_id            5l5vvFn9aCU6xZ693pF6QQ 
_model_server_result.datetime_utc      '2025-09-04 13:30:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mnj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":502}' 
#
_entry.id    5MNJ 
#
_exptl.entry_id    5MNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         69.83 
_cell.angle_beta          69.22 
_cell.angle_gamma         78.21 
_cell.entry_id            5MNJ 
_cell.length_a            54.24 
_cell.length_b            62.76 
_cell.length_c            66.35 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,S,T,U,V 1 1 
E,F,G,H,N,O,P,Q,R,W,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C SG CYS 33 C CYS 438 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc2 C SG CYS 36 C CYS 441 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc3 C NE2 HIS 47 C HIS 452 1_555 J ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 C ND1 HIS 52 C HIS 457 1_555 J ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc5 C SG CYS 56 C CYS 461 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc6 C SG CYS 59 C CYS 464 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc7 C SG CYS 70 C CYS 475 1_555 J ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc8 C SG CYS 73 C CYS 478 1_555 J ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc9 D SG CYS 11 D CYS 437 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc10 D SG CYS 14 D CYS 440 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc11 D NE2 HIS 25 D HIS 451 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc12 D ND1 HIS 30 D HIS 456 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc13 D SG CYS 34 D CYS 460 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 D SG CYS 37 D CYS 463 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc15 D SG CYS 48 D CYS 474 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc16 D SG CYS 51 D CYS 477 1_555 L ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc17 G SG CYS 33 G CYS 438 1_555 N ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc18 G SG CYS 36 G CYS 441 1_555 N ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc19 G NE2 HIS 47 G HIS 452 1_555 O ZN ZN . G ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc20 G ND1 HIS 52 G HIS 457 1_555 O ZN ZN . G ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc21 G SG CYS 56 G CYS 461 1_555 N ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc22 G SG CYS 59 G CYS 464 1_555 N ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc23 G SG CYS 70 G CYS 475 1_555 O ZN ZN . G ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc24 G SG CYS 73 G CYS 478 1_555 O ZN ZN . G ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc25 H SG CYS 11 H CYS 437 1_555 Q ZN ZN . H ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc26 H SG CYS 14 H CYS 440 1_555 Q ZN ZN . H ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc27 H NE2 HIS 25 H HIS 451 1_555 P ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc28 H ND1 HIS 30 H HIS 456 1_555 P ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc29 H SG CYS 34 H CYS 460 1_555 Q ZN ZN . H ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc30 H SG CYS 37 H CYS 463 1_555 Q ZN ZN . H ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc31 H SG CYS 48 H CYS 474 1_555 P ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc32 H SG CYS 51 H CYS 477 1_555 P ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5MNJ 
_atom_sites.fract_transf_matrix[1][1]    0.018437 
_atom_sites.fract_transf_matrix[1][2]    -0.003848 
_atom_sites.fract_transf_matrix[1][3]    -0.006129 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016277 
_atom_sites.fract_transf_matrix[2][3]    -0.005073 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 ZN C 1 501 1 ZN ZN . 
J 5 ZN C 1 502 4 ZN ZN . 
K 5 ZN D 1 501 5 ZN ZN . 
L 5 ZN D 1 502 6 ZN ZN . 
M 6 SO4 D 1 503 2 SO4 SO4 . 
N 5 ZN G 1 501 2 ZN ZN . 
O 5 ZN G 1 502 7 ZN ZN . 
P 5 ZN H 1 501 3 ZN ZN . 
Q 5 ZN H 1 502 8 ZN ZN . 
R 6 SO4 H 1 503 1 SO4 SO4 . 
S 7 HOH A 1 201 16 HOH HOH . 
S 7 HOH A 2 202 5 HOH HOH . 
S 7 HOH A 3 203 12 HOH HOH . 
S 7 HOH A 4 204 55 HOH HOH . 
S 7 HOH A 5 205 9 HOH HOH . 
S 7 HOH A 6 206 25 HOH HOH . 
S 7 HOH A 7 207 23 HOH HOH . 
S 7 HOH A 8 208 7 HOH HOH . 
S 7 HOH A 9 209 18 HOH HOH . 
S 7 HOH A 10 210 26 HOH HOH . 
S 7 HOH A 11 211 27 HOH HOH . 
S 7 HOH A 12 212 54 HOH HOH . 
S 7 HOH A 13 213 28 HOH HOH . 
T 7 HOH B 1 101 67 HOH HOH . 
T 7 HOH B 2 102 37 HOH HOH . 
T 7 HOH B 3 103 39 HOH HOH . 
T 7 HOH B 4 104 63 HOH HOH . 
U 7 HOH C 1 601 33 HOH HOH . 
U 7 HOH C 2 602 68 HOH HOH . 
V 7 HOH D 1 601 34 HOH HOH . 
V 7 HOH D 2 602 44 HOH HOH . 
V 7 HOH D 3 603 56 HOH HOH . 
V 7 HOH D 4 604 36 HOH HOH . 
V 7 HOH D 5 605 57 HOH HOH . 
V 7 HOH D 6 606 8 HOH HOH . 
V 7 HOH D 7 607 35 HOH HOH . 
W 7 HOH E 1 201 22 HOH HOH . 
W 7 HOH E 2 202 19 HOH HOH . 
W 7 HOH E 3 203 13 HOH HOH . 
W 7 HOH E 4 204 53 HOH HOH . 
W 7 HOH E 5 205 24 HOH HOH . 
W 7 HOH E 6 206 6 HOH HOH . 
W 7 HOH E 7 207 32 HOH HOH . 
W 7 HOH E 8 208 3 HOH HOH . 
W 7 HOH E 9 209 46 HOH HOH . 
W 7 HOH E 10 210 64 HOH HOH . 
W 7 HOH E 11 211 43 HOH HOH . 
W 7 HOH E 12 212 38 HOH HOH . 
W 7 HOH E 13 213 77 HOH HOH . 
W 7 HOH E 14 214 20 HOH HOH . 
W 7 HOH E 15 215 10 HOH HOH . 
W 7 HOH E 16 216 62 HOH HOH . 
W 7 HOH E 17 217 41 HOH HOH . 
W 7 HOH E 18 218 4 HOH HOH . 
W 7 HOH E 19 219 52 HOH HOH . 
W 7 HOH E 20 220 1 HOH HOH . 
W 7 HOH E 21 221 30 HOH HOH . 
W 7 HOH E 22 222 29 HOH HOH . 
W 7 HOH E 23 223 45 HOH HOH . 
W 7 HOH E 24 224 69 HOH HOH . 
W 7 HOH E 25 225 47 HOH HOH . 
W 7 HOH E 26 226 61 HOH HOH . 
W 7 HOH E 27 227 31 HOH HOH . 
X 7 HOH F 1 101 66 HOH HOH . 
X 7 HOH F 2 102 70 HOH HOH . 
X 7 HOH F 3 103 65 HOH HOH . 
X 7 HOH F 4 104 40 HOH HOH . 
X 7 HOH F 5 105 76 HOH HOH . 
Y 7 HOH G 1 601 21 HOH HOH . 
Y 7 HOH G 2 602 48 HOH HOH . 
Y 7 HOH G 3 603 59 HOH HOH . 
Y 7 HOH G 4 604 49 HOH HOH . 
Y 7 HOH G 5 605 2 HOH HOH . 
Y 7 HOH G 6 606 74 HOH HOH . 
Y 7 HOH G 7 607 11 HOH HOH . 
Y 7 HOH G 8 608 14 HOH HOH . 
Y 7 HOH G 9 609 73 HOH HOH . 
Y 7 HOH G 10 610 72 HOH HOH . 
Y 7 HOH G 11 611 58 HOH HOH . 
Z 7 HOH H 1 601 51 HOH HOH . 
Z 7 HOH H 2 602 75 HOH HOH . 
Z 7 HOH H 3 603 50 HOH HOH . 
Z 7 HOH H 4 604 17 HOH HOH . 
Z 7 HOH H 5 605 71 HOH HOH . 
Z 7 HOH H 6 606 42 HOH HOH . 
Z 7 HOH H 7 607 60 HOH HOH . 
Z 7 HOH H 8 608 15 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -11.852 
_atom_site.Cartn_y               -14.954 
_atom_site.Cartn_z               -0.312 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.08 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          G 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#