data_5MNM # _model_server_result.job_id TUmVEQaO7_ETUL_TO8rjKg _model_server_result.datetime_utc '2025-01-10 08:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5MNM # _exptl.entry_id 5MNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.153 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZYLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MNM _cell.length_a 54.841 _cell.length_b 58.334 _cell.length_c 67.781 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C7 H9 N' _chem_comp.formula_weight 107.153 _chem_comp.id ABN _chem_comp.mon_nstd_flag . _chem_comp.name BENZYLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C ABN sing 1 n n N HN1 ABN sing 2 n n N HN2 ABN sing 3 n n C C1 ABN sing 4 n n C H1 ABN sing 5 n n C H2A ABN sing 6 n n C1 C2 ABN doub 7 n y C1 C6 ABN sing 8 n y C2 C3 ABN sing 9 n y C2 H2 ABN sing 10 n n C3 C4 ABN doub 11 n y C3 H3 ABN sing 12 n n C4 C5 ABN sing 13 n y C4 H4 ABN sing 14 n n C5 C6 ABN doub 15 n y C5 H5 ABN sing 16 n n C6 H6 ABN sing 17 n n # _atom_sites.entry_id 5MNM _atom_sites.fract_transf_matrix[1][1] 0.018235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 3 SO4 A 1 304 3 SO4 SO4 . F 4 ABN A 1 305 1 ABN XXX . G 5 HOH A 1 401 138 HOH HOH . G 5 HOH A 2 402 119 HOH HOH . G 5 HOH A 3 403 116 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 55 HOH HOH . G 5 HOH A 6 406 61 HOH HOH . G 5 HOH A 7 407 74 HOH HOH . G 5 HOH A 8 408 36 HOH HOH . G 5 HOH A 9 409 14 HOH HOH . G 5 HOH A 10 410 126 HOH HOH . G 5 HOH A 11 411 9 HOH HOH . G 5 HOH A 12 412 112 HOH HOH . G 5 HOH A 13 413 114 HOH HOH . G 5 HOH A 14 414 41 HOH HOH . G 5 HOH A 15 415 141 HOH HOH . G 5 HOH A 16 416 42 HOH HOH . G 5 HOH A 17 417 121 HOH HOH . G 5 HOH A 18 418 155 HOH HOH . G 5 HOH A 19 419 37 HOH HOH . G 5 HOH A 20 420 39 HOH HOH . G 5 HOH A 21 421 20 HOH HOH . G 5 HOH A 22 422 75 HOH HOH . G 5 HOH A 23 423 50 HOH HOH . G 5 HOH A 24 424 59 HOH HOH . G 5 HOH A 25 425 79 HOH HOH . G 5 HOH A 26 426 57 HOH HOH . G 5 HOH A 27 427 25 HOH HOH . G 5 HOH A 28 428 94 HOH HOH . G 5 HOH A 29 429 144 HOH HOH . G 5 HOH A 30 430 115 HOH HOH . G 5 HOH A 31 431 5 HOH HOH . G 5 HOH A 32 432 69 HOH HOH . G 5 HOH A 33 433 110 HOH HOH . G 5 HOH A 34 434 10 HOH HOH . G 5 HOH A 35 435 6 HOH HOH . G 5 HOH A 36 436 56 HOH HOH . G 5 HOH A 37 437 153 HOH HOH . G 5 HOH A 38 438 43 HOH HOH . G 5 HOH A 39 439 78 HOH HOH . G 5 HOH A 40 440 151 HOH HOH . G 5 HOH A 41 441 51 HOH HOH . G 5 HOH A 42 442 21 HOH HOH . G 5 HOH A 43 443 17 HOH HOH . G 5 HOH A 44 444 109 HOH HOH . G 5 HOH A 45 445 154 HOH HOH . G 5 HOH A 46 446 15 HOH HOH . G 5 HOH A 47 447 85 HOH HOH . G 5 HOH A 48 448 12 HOH HOH . G 5 HOH A 49 449 95 HOH HOH . G 5 HOH A 50 450 122 HOH HOH . G 5 HOH A 51 451 111 HOH HOH . G 5 HOH A 52 452 91 HOH HOH . G 5 HOH A 53 453 31 HOH HOH . G 5 HOH A 54 454 140 HOH HOH . G 5 HOH A 55 455 13 HOH HOH . G 5 HOH A 56 456 26 HOH HOH . G 5 HOH A 57 457 72 HOH HOH . G 5 HOH A 58 458 152 HOH HOH . G 5 HOH A 59 459 33 HOH HOH . G 5 HOH A 60 460 8 HOH HOH . G 5 HOH A 61 461 11 HOH HOH . G 5 HOH A 62 462 24 HOH HOH . G 5 HOH A 63 463 32 HOH HOH . G 5 HOH A 64 464 40 HOH HOH . G 5 HOH A 65 465 58 HOH HOH . G 5 HOH A 66 466 101 HOH HOH . G 5 HOH A 67 467 71 HOH HOH . G 5 HOH A 68 468 103 HOH HOH . G 5 HOH A 69 469 44 HOH HOH . G 5 HOH A 70 470 53 HOH HOH . G 5 HOH A 71 471 142 HOH HOH . G 5 HOH A 72 472 38 HOH HOH . G 5 HOH A 73 473 87 HOH HOH . G 5 HOH A 74 474 81 HOH HOH . G 5 HOH A 75 475 65 HOH HOH . G 5 HOH A 76 476 123 HOH HOH . G 5 HOH A 77 477 80 HOH HOH . G 5 HOH A 78 478 70 HOH HOH . G 5 HOH A 79 479 52 HOH HOH . G 5 HOH A 80 480 86 HOH HOH . G 5 HOH A 81 481 19 HOH HOH . G 5 HOH A 82 482 68 HOH HOH . G 5 HOH A 83 483 97 HOH HOH . G 5 HOH A 84 484 131 HOH HOH . G 5 HOH A 85 485 47 HOH HOH . G 5 HOH A 86 486 64 HOH HOH . G 5 HOH A 87 487 88 HOH HOH . G 5 HOH A 88 488 99 HOH HOH . G 5 HOH A 89 489 23 HOH HOH . G 5 HOH A 90 490 143 HOH HOH . G 5 HOH A 91 491 77 HOH HOH . G 5 HOH A 92 492 30 HOH HOH . G 5 HOH A 93 493 117 HOH HOH . G 5 HOH A 94 494 48 HOH HOH . G 5 HOH A 95 495 108 HOH HOH . G 5 HOH A 96 496 92 HOH HOH . G 5 HOH A 97 497 139 HOH HOH . G 5 HOH A 98 498 118 HOH HOH . G 5 HOH A 99 499 16 HOH HOH . G 5 HOH A 100 500 89 HOH HOH . G 5 HOH A 101 501 18 HOH HOH . G 5 HOH A 102 502 100 HOH HOH . G 5 HOH A 103 503 129 HOH HOH . G 5 HOH A 104 504 149 HOH HOH . G 5 HOH A 105 505 96 HOH HOH . G 5 HOH A 106 506 93 HOH HOH . G 5 HOH A 107 507 29 HOH HOH . G 5 HOH A 108 508 104 HOH HOH . G 5 HOH A 109 509 34 HOH HOH . G 5 HOH A 110 510 113 HOH HOH . G 5 HOH A 111 511 137 HOH HOH . G 5 HOH A 112 512 67 HOH HOH . G 5 HOH A 113 513 135 HOH HOH . G 5 HOH A 114 514 27 HOH HOH . G 5 HOH A 115 515 49 HOH HOH . G 5 HOH A 116 516 90 HOH HOH . G 5 HOH A 117 517 35 HOH HOH . G 5 HOH A 118 518 54 HOH HOH . G 5 HOH A 119 519 156 HOH HOH . G 5 HOH A 120 520 146 HOH HOH . G 5 HOH A 121 521 148 HOH HOH . G 5 HOH A 122 522 120 HOH HOH . G 5 HOH A 123 523 63 HOH HOH . G 5 HOH A 124 524 124 HOH HOH . G 5 HOH A 125 525 102 HOH HOH . G 5 HOH A 126 526 130 HOH HOH . G 5 HOH A 127 527 125 HOH HOH . G 5 HOH A 128 528 83 HOH HOH . G 5 HOH A 129 529 133 HOH HOH . G 5 HOH A 130 530 60 HOH HOH . G 5 HOH A 131 531 84 HOH HOH . G 5 HOH A 132 532 98 HOH HOH . G 5 HOH A 133 533 134 HOH HOH . G 5 HOH A 134 534 105 HOH HOH . G 5 HOH A 135 535 132 HOH HOH . G 5 HOH A 136 536 76 HOH HOH . G 5 HOH A 137 537 106 HOH HOH . G 5 HOH A 138 538 107 HOH HOH . G 5 HOH A 139 539 46 HOH HOH . G 5 HOH A 140 540 28 HOH HOH . G 5 HOH A 141 541 82 HOH HOH . G 5 HOH A 142 542 62 HOH HOH . G 5 HOH A 143 543 157 HOH HOH . G 5 HOH A 144 544 66 HOH HOH . G 5 HOH A 145 545 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ABN . . . F 4 -3.099 -15.44 -19.063 1 11.95 ? N ABN 305 A 1 HETATM 2 C C ABN . . . F 4 -1.758 -15.555 -18.411 1 12.38 ? C ABN 305 A 1 HETATM 3 C C1 ABN . . . F 4 -1.686 -14.813 -17.122 1 11.13 ? C1 ABN 305 A 1 HETATM 4 C C2 ABN . . . F 4 -1.922 -13.463 -17.059 1 16.88 ? C2 ABN 305 A 1 HETATM 5 C C3 ABN . . . F 4 -1.815 -12.794 -15.856 1 18.87 ? C3 ABN 305 A 1 HETATM 6 C C4 ABN . . . F 4 -1.485 -13.464 -14.707 1 16.18 ? C4 ABN 305 A 1 HETATM 7 C C5 ABN . . . F 4 -1.257 -14.791 -14.756 1 15.39 ? C5 ABN 305 A 1 HETATM 8 C C6 ABN . . . F 4 -1.353 -15.464 -15.955 1 14.06 ? C6 ABN 305 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #