data_5MNO # _model_server_result.job_id 3pQGAq8yS07BbHDjHjDTJQ _model_server_result.datetime_utc '2024-11-21 23:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5MNO # _exptl.entry_id 5MNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.188 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidine-1-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MNO _cell.length_a 54.903 _cell.length_b 58.646 _cell.length_c 67.615 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B CA CA . A CA 301 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 B CA CA . A CA 301 1_555 F O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C6 H13 N3' _chem_comp.formula_weight 127.188 _chem_comp.id MRZ _chem_comp.mon_nstd_flag . _chem_comp.name piperidine-1-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C7 MRZ doub 237 n n C3 C2 MRZ sing 238 n n C3 N4 MRZ sing 239 n n C2 C1 MRZ sing 240 n n C7 N4 MRZ sing 241 n n C7 N8 MRZ sing 242 n n N4 C5 MRZ sing 243 n n C1 C6 MRZ sing 244 n n C5 C6 MRZ sing 245 n n C1 H1 MRZ sing 246 n n C1 H2 MRZ sing 247 n n C6 H3 MRZ sing 248 n n C6 H4 MRZ sing 249 n n C5 H5 MRZ sing 250 n n C5 H6 MRZ sing 251 n n C3 H7 MRZ sing 252 n n C3 H8 MRZ sing 253 n n C2 H9 MRZ sing 254 n n C2 H10 MRZ sing 255 n n N8 H11 MRZ sing 256 n n N8 H12 MRZ sing 257 n n N9 H13 MRZ sing 258 n n # _atom_sites.entry_id 5MNO _atom_sites.fract_transf_matrix[1][1] 0.018214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 MRZ A 1 304 1 MRZ PIZ . F 5 HOH A 1 401 194 HOH HOH . F 5 HOH A 2 402 66 HOH HOH . F 5 HOH A 3 403 99 HOH HOH . F 5 HOH A 4 404 172 HOH HOH . F 5 HOH A 5 405 155 HOH HOH . F 5 HOH A 6 406 171 HOH HOH . F 5 HOH A 7 407 108 HOH HOH . F 5 HOH A 8 408 136 HOH HOH . F 5 HOH A 9 409 157 HOH HOH . F 5 HOH A 10 410 56 HOH HOH . F 5 HOH A 11 411 175 HOH HOH . F 5 HOH A 12 412 51 HOH HOH . F 5 HOH A 13 413 139 HOH HOH . F 5 HOH A 14 414 72 HOH HOH . F 5 HOH A 15 415 6 HOH HOH . F 5 HOH A 16 416 73 HOH HOH . F 5 HOH A 17 417 45 HOH HOH . F 5 HOH A 18 418 159 HOH HOH . F 5 HOH A 19 419 53 HOH HOH . F 5 HOH A 20 420 34 HOH HOH . F 5 HOH A 21 421 83 HOH HOH . F 5 HOH A 22 422 116 HOH HOH . F 5 HOH A 23 423 61 HOH HOH . F 5 HOH A 24 424 190 HOH HOH . F 5 HOH A 25 425 21 HOH HOH . F 5 HOH A 26 426 78 HOH HOH . F 5 HOH A 27 427 180 HOH HOH . F 5 HOH A 28 428 179 HOH HOH . F 5 HOH A 29 429 95 HOH HOH . F 5 HOH A 30 430 39 HOH HOH . F 5 HOH A 31 431 29 HOH HOH . F 5 HOH A 32 432 168 HOH HOH . F 5 HOH A 33 433 158 HOH HOH . F 5 HOH A 34 434 59 HOH HOH . F 5 HOH A 35 435 134 HOH HOH . F 5 HOH A 36 436 70 HOH HOH . F 5 HOH A 37 437 7 HOH HOH . F 5 HOH A 38 438 146 HOH HOH . F 5 HOH A 39 439 91 HOH HOH . F 5 HOH A 40 440 94 HOH HOH . F 5 HOH A 41 441 185 HOH HOH . F 5 HOH A 42 442 153 HOH HOH . F 5 HOH A 43 443 167 HOH HOH . F 5 HOH A 44 444 8 HOH HOH . F 5 HOH A 45 445 125 HOH HOH . F 5 HOH A 46 446 144 HOH HOH . F 5 HOH A 47 447 107 HOH HOH . F 5 HOH A 48 448 24 HOH HOH . F 5 HOH A 49 449 1 HOH HOH . F 5 HOH A 50 450 25 HOH HOH . F 5 HOH A 51 451 74 HOH HOH . F 5 HOH A 52 452 42 HOH HOH . F 5 HOH A 53 453 10 HOH HOH . F 5 HOH A 54 454 23 HOH HOH . F 5 HOH A 55 455 187 HOH HOH . F 5 HOH A 56 456 47 HOH HOH . F 5 HOH A 57 457 16 HOH HOH . F 5 HOH A 58 458 156 HOH HOH . F 5 HOH A 59 459 33 HOH HOH . F 5 HOH A 60 460 49 HOH HOH . F 5 HOH A 61 461 43 HOH HOH . F 5 HOH A 62 462 84 HOH HOH . F 5 HOH A 63 463 38 HOH HOH . F 5 HOH A 64 464 121 HOH HOH . F 5 HOH A 65 465 41 HOH HOH . F 5 HOH A 66 466 131 HOH HOH . F 5 HOH A 67 467 96 HOH HOH . F 5 HOH A 68 468 60 HOH HOH . F 5 HOH A 69 469 4 HOH HOH . F 5 HOH A 70 470 36 HOH HOH . F 5 HOH A 71 471 14 HOH HOH . F 5 HOH A 72 472 12 HOH HOH . F 5 HOH A 73 473 77 HOH HOH . F 5 HOH A 74 474 19 HOH HOH . F 5 HOH A 75 475 22 HOH HOH . F 5 HOH A 76 476 75 HOH HOH . F 5 HOH A 77 477 46 HOH HOH . F 5 HOH A 78 478 65 HOH HOH . F 5 HOH A 79 479 55 HOH HOH . F 5 HOH A 80 480 98 HOH HOH . F 5 HOH A 81 481 154 HOH HOH . F 5 HOH A 82 482 122 HOH HOH . F 5 HOH A 83 483 112 HOH HOH . F 5 HOH A 84 484 71 HOH HOH . F 5 HOH A 85 485 76 HOH HOH . F 5 HOH A 86 486 40 HOH HOH . F 5 HOH A 87 487 115 HOH HOH . F 5 HOH A 88 488 69 HOH HOH . F 5 HOH A 89 489 17 HOH HOH . F 5 HOH A 90 490 67 HOH HOH . F 5 HOH A 91 491 48 HOH HOH . F 5 HOH A 92 492 68 HOH HOH . F 5 HOH A 93 493 103 HOH HOH . F 5 HOH A 94 494 105 HOH HOH . F 5 HOH A 95 495 18 HOH HOH . F 5 HOH A 96 496 130 HOH HOH . F 5 HOH A 97 497 93 HOH HOH . F 5 HOH A 98 498 79 HOH HOH . F 5 HOH A 99 499 27 HOH HOH . F 5 HOH A 100 500 174 HOH HOH . F 5 HOH A 101 501 100 HOH HOH . F 5 HOH A 102 502 88 HOH HOH . F 5 HOH A 103 503 114 HOH HOH . F 5 HOH A 104 504 50 HOH HOH . F 5 HOH A 105 505 101 HOH HOH . F 5 HOH A 106 506 196 HOH HOH . F 5 HOH A 107 507 166 HOH HOH . F 5 HOH A 108 508 82 HOH HOH . F 5 HOH A 109 509 150 HOH HOH . F 5 HOH A 110 510 37 HOH HOH . F 5 HOH A 111 511 127 HOH HOH . F 5 HOH A 112 512 87 HOH HOH . F 5 HOH A 113 513 97 HOH HOH . F 5 HOH A 114 514 15 HOH HOH . F 5 HOH A 115 515 152 HOH HOH . F 5 HOH A 116 516 198 HOH HOH . F 5 HOH A 117 517 124 HOH HOH . F 5 HOH A 118 518 133 HOH HOH . F 5 HOH A 119 519 63 HOH HOH . F 5 HOH A 120 520 141 HOH HOH . F 5 HOH A 121 521 118 HOH HOH . F 5 HOH A 122 522 151 HOH HOH . F 5 HOH A 123 523 123 HOH HOH . F 5 HOH A 124 524 28 HOH HOH . F 5 HOH A 125 525 188 HOH HOH . F 5 HOH A 126 526 92 HOH HOH . F 5 HOH A 127 527 89 HOH HOH . F 5 HOH A 128 528 119 HOH HOH . F 5 HOH A 129 529 80 HOH HOH . F 5 HOH A 130 530 164 HOH HOH . F 5 HOH A 131 531 26 HOH HOH . F 5 HOH A 132 532 31 HOH HOH . F 5 HOH A 133 533 102 HOH HOH . F 5 HOH A 134 534 35 HOH HOH . F 5 HOH A 135 535 106 HOH HOH . F 5 HOH A 136 536 62 HOH HOH . F 5 HOH A 137 537 104 HOH HOH . F 5 HOH A 138 538 177 HOH HOH . F 5 HOH A 139 539 54 HOH HOH . F 5 HOH A 140 540 162 HOH HOH . F 5 HOH A 141 541 52 HOH HOH . F 5 HOH A 142 542 137 HOH HOH . F 5 HOH A 143 543 126 HOH HOH . F 5 HOH A 144 544 170 HOH HOH . F 5 HOH A 145 545 81 HOH HOH . F 5 HOH A 146 546 117 HOH HOH . F 5 HOH A 147 547 142 HOH HOH . F 5 HOH A 148 548 195 HOH HOH . F 5 HOH A 149 549 32 HOH HOH . F 5 HOH A 150 550 57 HOH HOH . F 5 HOH A 151 551 85 HOH HOH . F 5 HOH A 152 552 129 HOH HOH . F 5 HOH A 153 553 161 HOH HOH . F 5 HOH A 154 554 143 HOH HOH . F 5 HOH A 155 555 135 HOH HOH . F 5 HOH A 156 556 110 HOH HOH . F 5 HOH A 157 557 192 HOH HOH . F 5 HOH A 158 558 90 HOH HOH . F 5 HOH A 159 559 113 HOH HOH . F 5 HOH A 160 560 169 HOH HOH . F 5 HOH A 161 561 30 HOH HOH . F 5 HOH A 162 562 44 HOH HOH . F 5 HOH A 163 563 86 HOH HOH . F 5 HOH A 164 564 58 HOH HOH . F 5 HOH A 165 565 64 HOH HOH . F 5 HOH A 166 566 111 HOH HOH . F 5 HOH A 167 567 138 HOH HOH . F 5 HOH A 168 568 148 HOH HOH . F 5 HOH A 169 569 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRZ . A . E 4 -1.646 -13.588 -14.638 0.67 13.5 ? C1 MRZ 304 A 1 HETATM 2 C C1 MRZ . B . E 4 -1.199 -13.355 -14.842 0.33 14.39 ? C1 MRZ 304 A 1 HETATM 3 C C6 MRZ . A . E 4 -2.459 -13.045 -15.786 0.67 12.94 ? C6 MRZ 304 A 1 HETATM 4 C C6 MRZ . B . E 4 -1.319 -12.655 -16.183 0.33 13.65 ? C6 MRZ 304 A 1 HETATM 5 C C5 MRZ . A . E 4 -1.799 -13.34 -17.107 0.67 12.8 ? C5 MRZ 304 A 1 HETATM 6 C C5 MRZ . B . E 4 -2.188 -13.436 -17.13 0.33 13.24 ? C5 MRZ 304 A 1 HETATM 7 N N4 MRZ . A . E 4 -1.619 -14.789 -17.251 0.67 11.42 ? N4 MRZ 304 A 1 HETATM 8 N N4 MRZ . B . E 4 -1.706 -14.819 -17.208 0.33 12.52 ? N4 MRZ 304 A 1 HETATM 9 C C3 MRZ . A . E 4 -0.744 -15.293 -16.184 0.67 10.72 ? C3 MRZ 304 A 1 HETATM 10 C C3 MRZ . B . E 4 -1.501 -15.561 -15.961 0.33 13.78 ? C3 MRZ 304 A 1 HETATM 11 C C2 MRZ . A . E 4 -1.356 -15.051 -14.839 0.67 11.66 ? C2 MRZ 304 A 1 HETATM 12 C C2 MRZ . B . E 4 -0.652 -14.76 -15.007 0.33 14.59 ? C2 MRZ 304 A 1 HETATM 13 C C7 MRZ . . . E 4 -2.003 -15.511 -18.307 1 10.1 ? C7 MRZ 304 A 1 HETATM 14 N N8 MRZ . . . E 4 -1.649 -16.771 -18.44 1 10.48 1 N8 MRZ 304 A 1 HETATM 15 N N9 MRZ . . . E 4 -2.716 -14.973 -19.273 1 12.74 ? N9 MRZ 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #