data_5MNQ # _model_server_result.job_id '_I0kwsYcjTQtKzK3_ME3EQ' _model_server_result.datetime_utc '2024-11-24 21:57:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5MNQ # _exptl.entry_id 5MNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MNQ _cell.length_a 59.893 _cell.length_b 64.076 _cell.length_c 69.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 B CA CA . A CA 301 1_555 K O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 B CA CA . A CA 301 1_555 K O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5MNQ _atom_sites.fract_transf_matrix[1][1] 0.016696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 3 SO4 A 1 304 3 SO4 SO4 . F 3 SO4 A 1 305 4 SO4 SO4 . G 3 SO4 A 1 306 5 SO4 SO4 . H 4 J3I A 1 307 1 J3I 113 . I 5 DMS A 1 308 1 DMS DMS . J 5 DMS A 1 309 2 DMS DMS . K 6 HOH A 1 401 195 HOH HOH . K 6 HOH A 2 402 242 HOH HOH . K 6 HOH A 3 403 222 HOH HOH . K 6 HOH A 4 404 118 HOH HOH . K 6 HOH A 5 405 147 HOH HOH . K 6 HOH A 6 406 115 HOH HOH . K 6 HOH A 7 407 142 HOH HOH . K 6 HOH A 8 408 4 HOH HOH . K 6 HOH A 9 409 252 HOH HOH . K 6 HOH A 10 410 143 HOH HOH . K 6 HOH A 11 411 179 HOH HOH . K 6 HOH A 12 412 187 HOH HOH . K 6 HOH A 13 413 241 HOH HOH . K 6 HOH A 14 414 99 HOH HOH . K 6 HOH A 15 415 122 HOH HOH . K 6 HOH A 16 416 26 HOH HOH . K 6 HOH A 17 417 98 HOH HOH . K 6 HOH A 18 418 39 HOH HOH . K 6 HOH A 19 419 7 HOH HOH . K 6 HOH A 20 420 251 HOH HOH . K 6 HOH A 21 421 90 HOH HOH . K 6 HOH A 22 422 47 HOH HOH . K 6 HOH A 23 423 40 HOH HOH . K 6 HOH A 24 424 186 HOH HOH . K 6 HOH A 25 425 16 HOH HOH . K 6 HOH A 26 426 103 HOH HOH . K 6 HOH A 27 427 207 HOH HOH . K 6 HOH A 28 428 32 HOH HOH . K 6 HOH A 29 429 129 HOH HOH . K 6 HOH A 30 430 59 HOH HOH . K 6 HOH A 31 431 261 HOH HOH . K 6 HOH A 32 432 19 HOH HOH . K 6 HOH A 33 433 141 HOH HOH . K 6 HOH A 34 434 200 HOH HOH . K 6 HOH A 35 435 246 HOH HOH . K 6 HOH A 36 436 35 HOH HOH . K 6 HOH A 37 437 80 HOH HOH . K 6 HOH A 38 438 23 HOH HOH . K 6 HOH A 39 439 60 HOH HOH . K 6 HOH A 40 440 208 HOH HOH . K 6 HOH A 41 441 42 HOH HOH . K 6 HOH A 42 442 111 HOH HOH . K 6 HOH A 43 443 240 HOH HOH . K 6 HOH A 44 444 72 HOH HOH . K 6 HOH A 45 445 63 HOH HOH . K 6 HOH A 46 446 50 HOH HOH . K 6 HOH A 47 447 126 HOH HOH . K 6 HOH A 48 448 10 HOH HOH . K 6 HOH A 49 449 110 HOH HOH . K 6 HOH A 50 450 229 HOH HOH . K 6 HOH A 51 451 18 HOH HOH . K 6 HOH A 52 452 243 HOH HOH . K 6 HOH A 53 453 68 HOH HOH . K 6 HOH A 54 454 15 HOH HOH . K 6 HOH A 55 455 87 HOH HOH . K 6 HOH A 56 456 3 HOH HOH . K 6 HOH A 57 457 36 HOH HOH . K 6 HOH A 58 458 28 HOH HOH . K 6 HOH A 59 459 154 HOH HOH . K 6 HOH A 60 460 157 HOH HOH . K 6 HOH A 61 461 9 HOH HOH . K 6 HOH A 62 462 101 HOH HOH . K 6 HOH A 63 463 177 HOH HOH . K 6 HOH A 64 464 76 HOH HOH . K 6 HOH A 65 465 25 HOH HOH . K 6 HOH A 66 466 173 HOH HOH . K 6 HOH A 67 467 106 HOH HOH . K 6 HOH A 68 468 133 HOH HOH . K 6 HOH A 69 469 53 HOH HOH . K 6 HOH A 70 470 8 HOH HOH . K 6 HOH A 71 471 184 HOH HOH . K 6 HOH A 72 472 232 HOH HOH . K 6 HOH A 73 473 51 HOH HOH . K 6 HOH A 74 474 119 HOH HOH . K 6 HOH A 75 475 144 HOH HOH . K 6 HOH A 76 476 213 HOH HOH . K 6 HOH A 77 477 46 HOH HOH . K 6 HOH A 78 478 85 HOH HOH . K 6 HOH A 79 479 30 HOH HOH . K 6 HOH A 80 480 149 HOH HOH . K 6 HOH A 81 481 14 HOH HOH . K 6 HOH A 82 482 150 HOH HOH . K 6 HOH A 83 483 253 HOH HOH . K 6 HOH A 84 484 2 HOH HOH . K 6 HOH A 85 485 225 HOH HOH . K 6 HOH A 86 486 84 HOH HOH . K 6 HOH A 87 487 27 HOH HOH . K 6 HOH A 88 488 11 HOH HOH . K 6 HOH A 89 489 165 HOH HOH . K 6 HOH A 90 490 227 HOH HOH . K 6 HOH A 91 491 29 HOH HOH . K 6 HOH A 92 492 21 HOH HOH . K 6 HOH A 93 493 69 HOH HOH . K 6 HOH A 94 494 1 HOH HOH . K 6 HOH A 95 495 20 HOH HOH . K 6 HOH A 96 496 190 HOH HOH . K 6 HOH A 97 497 77 HOH HOH . K 6 HOH A 98 498 91 HOH HOH . K 6 HOH A 99 499 112 HOH HOH . K 6 HOH A 100 500 49 HOH HOH . K 6 HOH A 101 501 22 HOH HOH . K 6 HOH A 102 502 54 HOH HOH . K 6 HOH A 103 503 178 HOH HOH . K 6 HOH A 104 504 5 HOH HOH . K 6 HOH A 105 505 202 HOH HOH . K 6 HOH A 106 506 125 HOH HOH . K 6 HOH A 107 507 41 HOH HOH . K 6 HOH A 108 508 105 HOH HOH . K 6 HOH A 109 509 214 HOH HOH . K 6 HOH A 110 510 95 HOH HOH . K 6 HOH A 111 511 58 HOH HOH . K 6 HOH A 112 512 12 HOH HOH . K 6 HOH A 113 513 256 HOH HOH . K 6 HOH A 114 514 244 HOH HOH . K 6 HOH A 115 515 74 HOH HOH . K 6 HOH A 116 516 258 HOH HOH . K 6 HOH A 117 517 48 HOH HOH . K 6 HOH A 118 518 137 HOH HOH . K 6 HOH A 119 519 151 HOH HOH . K 6 HOH A 120 520 201 HOH HOH . K 6 HOH A 121 521 92 HOH HOH . K 6 HOH A 122 522 75 HOH HOH . K 6 HOH A 123 523 176 HOH HOH . K 6 HOH A 124 524 198 HOH HOH . K 6 HOH A 125 525 194 HOH HOH . K 6 HOH A 126 526 248 HOH HOH . K 6 HOH A 127 527 204 HOH HOH . K 6 HOH A 128 528 34 HOH HOH . K 6 HOH A 129 529 64 HOH HOH . K 6 HOH A 130 530 97 HOH HOH . K 6 HOH A 131 531 197 HOH HOH . K 6 HOH A 132 532 167 HOH HOH . K 6 HOH A 133 533 104 HOH HOH . K 6 HOH A 134 534 238 HOH HOH . K 6 HOH A 135 535 223 HOH HOH . K 6 HOH A 136 536 79 HOH HOH . K 6 HOH A 137 537 181 HOH HOH . K 6 HOH A 138 538 203 HOH HOH . K 6 HOH A 139 539 70 HOH HOH . K 6 HOH A 140 540 120 HOH HOH . K 6 HOH A 141 541 13 HOH HOH . K 6 HOH A 142 542 250 HOH HOH . K 6 HOH A 143 543 209 HOH HOH . K 6 HOH A 144 544 43 HOH HOH . K 6 HOH A 145 545 168 HOH HOH . K 6 HOH A 146 546 71 HOH HOH . K 6 HOH A 147 547 215 HOH HOH . K 6 HOH A 148 548 174 HOH HOH . K 6 HOH A 149 549 83 HOH HOH . K 6 HOH A 150 550 196 HOH HOH . K 6 HOH A 151 551 100 HOH HOH . K 6 HOH A 152 552 61 HOH HOH . K 6 HOH A 153 553 66 HOH HOH . K 6 HOH A 154 554 124 HOH HOH . K 6 HOH A 155 555 17 HOH HOH . K 6 HOH A 156 556 37 HOH HOH . K 6 HOH A 157 557 113 HOH HOH . K 6 HOH A 158 558 109 HOH HOH . K 6 HOH A 159 559 171 HOH HOH . K 6 HOH A 160 560 159 HOH HOH . K 6 HOH A 161 561 65 HOH HOH . K 6 HOH A 162 562 52 HOH HOH . K 6 HOH A 163 563 82 HOH HOH . K 6 HOH A 164 564 102 HOH HOH . K 6 HOH A 165 565 230 HOH HOH . K 6 HOH A 166 566 55 HOH HOH . K 6 HOH A 167 567 57 HOH HOH . K 6 HOH A 168 568 67 HOH HOH . K 6 HOH A 169 569 175 HOH HOH . K 6 HOH A 170 570 45 HOH HOH . K 6 HOH A 171 571 73 HOH HOH . K 6 HOH A 172 572 156 HOH HOH . K 6 HOH A 173 573 161 HOH HOH . K 6 HOH A 174 574 130 HOH HOH . K 6 HOH A 175 575 224 HOH HOH . K 6 HOH A 176 576 239 HOH HOH . K 6 HOH A 177 577 189 HOH HOH . K 6 HOH A 178 578 78 HOH HOH . K 6 HOH A 179 579 140 HOH HOH . K 6 HOH A 180 580 245 HOH HOH . K 6 HOH A 181 581 205 HOH HOH . K 6 HOH A 182 582 152 HOH HOH . K 6 HOH A 183 583 183 HOH HOH . K 6 HOH A 184 584 210 HOH HOH . K 6 HOH A 185 585 254 HOH HOH . K 6 HOH A 186 586 211 HOH HOH . K 6 HOH A 187 587 255 HOH HOH . K 6 HOH A 188 588 259 HOH HOH . K 6 HOH A 189 589 191 HOH HOH . K 6 HOH A 190 590 160 HOH HOH . K 6 HOH A 191 591 127 HOH HOH . K 6 HOH A 192 592 148 HOH HOH . K 6 HOH A 193 593 155 HOH HOH . K 6 HOH A 194 594 235 HOH HOH . K 6 HOH A 195 595 153 HOH HOH . K 6 HOH A 196 596 107 HOH HOH . K 6 HOH A 197 597 172 HOH HOH . K 6 HOH A 198 598 145 HOH HOH . K 6 HOH A 199 599 219 HOH HOH . K 6 HOH A 200 600 236 HOH HOH . K 6 HOH A 201 601 114 HOH HOH . K 6 HOH A 202 602 121 HOH HOH . K 6 HOH A 203 603 185 HOH HOH . K 6 HOH A 204 604 132 HOH HOH . K 6 HOH A 205 605 193 HOH HOH . K 6 HOH A 206 606 93 HOH HOH . K 6 HOH A 207 607 163 HOH HOH . K 6 HOH A 208 608 86 HOH HOH . K 6 HOH A 209 609 56 HOH HOH . K 6 HOH A 210 610 212 HOH HOH . K 6 HOH A 211 611 262 HOH HOH . K 6 HOH A 212 612 260 HOH HOH . K 6 HOH A 213 613 169 HOH HOH . K 6 HOH A 214 614 257 HOH HOH . K 6 HOH A 215 615 199 HOH HOH . K 6 HOH A 216 616 216 HOH HOH . K 6 HOH A 217 617 234 HOH HOH . K 6 HOH A 218 618 134 HOH HOH . K 6 HOH A 219 619 166 HOH HOH . K 6 HOH A 220 620 231 HOH HOH . K 6 HOH A 221 621 146 HOH HOH . K 6 HOH A 222 622 247 HOH HOH . K 6 HOH A 223 623 170 HOH HOH . K 6 HOH A 224 624 220 HOH HOH . K 6 HOH A 225 625 123 HOH HOH . K 6 HOH A 226 626 89 HOH HOH . K 6 HOH A 227 627 206 HOH HOH . K 6 HOH A 228 628 117 HOH HOH . K 6 HOH A 229 629 233 HOH HOH . K 6 HOH A 230 630 31 HOH HOH . K 6 HOH A 231 631 164 HOH HOH . K 6 HOH A 232 632 108 HOH HOH . K 6 HOH A 233 633 192 HOH HOH . K 6 HOH A 234 634 249 HOH HOH . K 6 HOH A 235 635 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 5 29.464 69.469 8.064 0.5 30.2 ? S DMS 309 A 1 HETATM 2 O O DMS . . . J 5 28.176 68.971 7.481 0.5 28.88 ? O DMS 309 A 1 HETATM 3 C C1 DMS . . . J 5 29.293 71.172 8.648 0.5 30.02 ? C1 DMS 309 A 1 HETATM 4 C C2 DMS . . . J 5 29.926 68.605 9.587 0.5 28.9 ? C2 DMS 309 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #