data_5MNX # _model_server_result.job_id RIxe8IyQeZb9Fx15f57vIA _model_server_result.datetime_utc '2024-11-17 12:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5MNX # _exptl.entry_id 5MNX _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 95.122 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINOPYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MNX _cell.length_a 55.096 _cell.length_b 58.701 _cell.length_c 67.631 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 B CA CA . A CA 301 1_555 D O DOD . A DOD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 B CA CA . A CA 301 1_555 D O DOD . A DOD 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C5 H7 N2 1' _chem_comp.formula_weight 95.122 _chem_comp.id 2AP _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINOPYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 2AP sing 1 n y N1 C6 2AP doub 2 n y N1 HN1 2AP sing 3 n n C2 C3 2AP doub 4 n y C2 N 2AP sing 5 n n C3 C4 2AP sing 6 n y C3 H3 2AP sing 7 n n C4 C5 2AP doub 8 n y C4 H4 2AP sing 9 n n C5 C6 2AP sing 10 n y C5 H5 2AP sing 11 n n C6 H6 2AP sing 12 n n N HN1A 2AP sing 13 n n N HN2 2AP sing 14 n n # _atom_sites.entry_id 5MNX _atom_sites.fract_transf_matrix[1][1] 0.01815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 2AP A 1 302 1 2AP 2AP . D 4 DOD A 1 401 79 DOD DOD . D 4 DOD A 2 402 134 DOD DOD . D 4 DOD A 3 403 110 DOD DOD . D 4 DOD A 4 404 60 DOD DOD . D 4 DOD A 5 405 97 DOD DOD . D 4 DOD A 6 406 46 DOD DOD . D 4 DOD A 7 407 81 DOD DOD . D 4 DOD A 8 408 111 DOD DOD . D 4 DOD A 9 409 44 DOD DOD . D 4 DOD A 10 410 5 DOD DOD . D 4 DOD A 11 411 13 DOD DOD . D 4 DOD A 12 412 65 DOD DOD . D 4 DOD A 13 413 43 DOD DOD . D 4 DOD A 14 414 88 DOD DOD . D 4 DOD A 15 415 136 DOD DOD . D 4 DOD A 16 416 54 DOD DOD . D 4 DOD A 17 417 84 DOD DOD . D 4 DOD A 18 418 41 DOD DOD . D 4 DOD A 19 419 102 DOD DOD . D 4 DOD A 20 420 70 DOD DOD . D 4 DOD A 21 421 6 DOD DOD . D 4 DOD A 22 422 108 DOD DOD . D 4 DOD A 23 423 7 DOD DOD . D 4 DOD A 24 424 22 DOD DOD . D 4 DOD A 25 425 10 DOD DOD . D 4 DOD A 26 426 71 DOD DOD . D 4 DOD A 27 427 20 DOD DOD . D 4 DOD A 28 428 1 DOD DOD . D 4 DOD A 29 429 52 DOD DOD . D 4 DOD A 30 430 66 DOD DOD . D 4 DOD A 31 431 76 DOD DOD . D 4 DOD A 32 432 56 DOD DOD . D 4 DOD A 33 433 78 DOD DOD . D 4 DOD A 34 434 36 DOD DOD . D 4 DOD A 35 435 101 DOD DOD . D 4 DOD A 36 436 17 DOD DOD . D 4 DOD A 37 437 2 DOD DOD . D 4 DOD A 38 438 67 DOD DOD . D 4 DOD A 39 439 50 DOD DOD . D 4 DOD A 40 440 116 DOD DOD . D 4 DOD A 41 441 4 DOD DOD . D 4 DOD A 42 442 103 DOD DOD . D 4 DOD A 43 443 21 DOD DOD . D 4 DOD A 44 444 27 DOD DOD . D 4 DOD A 45 445 37 DOD DOD . D 4 DOD A 46 446 34 DOD DOD . D 4 DOD A 47 447 42 DOD DOD . D 4 DOD A 48 448 12 DOD DOD . D 4 DOD A 49 449 11 DOD DOD . D 4 DOD A 50 450 24 DOD DOD . D 4 DOD A 51 451 93 DOD DOD . D 4 DOD A 52 452 83 DOD DOD . D 4 DOD A 53 453 8 DOD DOD . D 4 DOD A 54 454 18 DOD DOD . D 4 DOD A 55 455 14 DOD DOD . D 4 DOD A 56 456 69 DOD DOD . D 4 DOD A 57 457 25 DOD DOD . D 4 DOD A 58 458 28 DOD DOD . D 4 DOD A 59 459 33 DOD DOD . D 4 DOD A 60 460 23 DOD DOD . D 4 DOD A 61 461 9 DOD DOD . D 4 DOD A 62 462 106 DOD DOD . D 4 DOD A 63 463 19 DOD DOD . D 4 DOD A 64 464 40 DOD DOD . D 4 DOD A 65 465 51 DOD DOD . D 4 DOD A 66 466 130 DOD DOD . D 4 DOD A 67 467 15 DOD DOD . D 4 DOD A 68 468 133 DOD DOD . D 4 DOD A 69 469 16 DOD DOD . D 4 DOD A 70 470 131 DOD DOD . D 4 DOD A 71 471 45 DOD DOD . D 4 DOD A 72 472 90 DOD DOD . D 4 DOD A 73 473 94 DOD DOD . D 4 DOD A 74 474 59 DOD DOD . D 4 DOD A 75 475 77 DOD DOD . D 4 DOD A 76 476 47 DOD DOD . D 4 DOD A 77 477 39 DOD DOD . D 4 DOD A 78 478 112 DOD DOD . D 4 DOD A 79 479 3 DOD DOD . D 4 DOD A 80 480 132 DOD DOD . D 4 DOD A 81 481 62 DOD DOD . D 4 DOD A 82 482 30 DOD DOD . D 4 DOD A 83 483 29 DOD DOD . D 4 DOD A 84 484 80 DOD DOD . D 4 DOD A 85 485 114 DOD DOD . D 4 DOD A 86 486 53 DOD DOD . D 4 DOD A 87 487 61 DOD DOD . D 4 DOD A 88 488 32 DOD DOD . D 4 DOD A 89 489 31 DOD DOD . D 4 DOD A 90 490 105 DOD DOD . D 4 DOD A 91 491 113 DOD DOD . D 4 DOD A 92 492 63 DOD DOD . D 4 DOD A 93 493 64 DOD DOD . D 4 DOD A 94 494 55 DOD DOD . D 4 DOD A 95 495 98 DOD DOD . D 4 DOD A 96 496 124 DOD DOD . D 4 DOD A 97 497 135 DOD DOD . D 4 DOD A 98 498 99 DOD DOD . D 4 DOD A 99 499 91 DOD DOD . D 4 DOD A 100 500 128 DOD DOD . D 4 DOD A 101 501 107 DOD DOD . D 4 DOD A 102 502 115 DOD DOD . D 4 DOD A 103 503 109 DOD DOD . D 4 DOD A 104 504 119 DOD DOD . D 4 DOD A 105 505 87 DOD DOD . D 4 DOD A 106 506 74 DOD DOD . D 4 DOD A 107 507 58 DOD DOD . D 4 DOD A 108 508 26 DOD DOD . D 4 DOD A 109 509 117 DOD DOD . D 4 DOD A 110 510 127 DOD DOD . D 4 DOD A 111 511 92 DOD DOD . D 4 DOD A 112 512 82 DOD DOD . D 4 DOD A 113 513 48 DOD DOD . D 4 DOD A 114 514 35 DOD DOD . D 4 DOD A 115 515 104 DOD DOD . D 4 DOD A 116 516 126 DOD DOD . D 4 DOD A 117 517 96 DOD DOD . D 4 DOD A 118 518 86 DOD DOD . D 4 DOD A 119 519 38 DOD DOD . D 4 DOD A 120 520 121 DOD DOD . D 4 DOD A 121 521 125 DOD DOD . D 4 DOD A 122 522 72 DOD DOD . D 4 DOD A 123 523 68 DOD DOD . D 4 DOD A 124 524 85 DOD DOD . D 4 DOD A 125 525 118 DOD DOD . D 4 DOD A 126 526 73 DOD DOD . D 4 DOD A 127 527 49 DOD DOD . D 4 DOD A 128 528 123 DOD DOD . D 4 DOD A 129 529 129 DOD DOD . D 4 DOD A 130 530 122 DOD DOD . D 4 DOD A 131 531 95 DOD DOD . D 4 DOD A 132 532 57 DOD DOD . D 4 DOD A 133 533 89 DOD DOD . D 4 DOD A 134 534 75 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 2AP . . . C 3 -2.342 -14.155 -17.772 1 20.94 1 N1 2AP 302 A 1 HETATM 2 C C2 2AP . . . C 3 -1.87 -15.39 -17.507 1 15.38 ? C2 2AP 302 A 1 HETATM 3 C C3 2AP . . . C 3 -1.325 -15.629 -16.232 1 18.89 ? C3 2AP 302 A 1 HETATM 4 C C4 2AP . . . C 3 -1.289 -14.599 -15.312 1 17.02 ? C4 2AP 302 A 1 HETATM 5 C C5 2AP . . . C 3 -1.785 -13.353 -15.627 1 27.55 ? C5 2AP 302 A 1 HETATM 6 C C6 2AP . . . C 3 -2.315 -13.157 -16.87 1 21.66 ? C6 2AP 302 A 1 HETATM 7 N N 2AP . . . C 3 -1.936 -16.313 -18.458 1 24.37 ? N 2AP 302 A 1 HETATM 8 D DN1 2AP . . . C 3 -2.728 -13.957 -18.689 1 28.29 ? DN1 2AP 302 A 1 HETATM 9 H H3 2AP . . . C 3 -0.96 -16.615 -15.956 1 20.06 ? H3 2AP 302 A 1 HETATM 10 H H5 2AP . . . C 3 -1.747 -12.533 -14.915 1 24.23 ? H5 2AP 302 A 1 HETATM 11 D DN1A 2AP . . . C 3 -1.591 -17.254 -18.285 1 23.16 ? DN1A 2AP 302 A 1 HETATM 12 D DN2 2AP . . . C 3 -2.318 -16.133 -19.38 1 27.02 ? DN2 2AP 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #