data_5MO8 # _model_server_result.job_id hXOXgOMhYYLQfsw7Sw16TQ _model_server_result.datetime_utc '2024-11-24 03:44:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 5MO8 # _exptl.entry_id 5MO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.955 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[[3-[3-[(3-chloranyl-4-phenyl-phenyl)methylamino]propylamino]-3-oxidanylidene-propanoyl]amino]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MO8 _cell.length_a 64.596 _cell.length_b 67.495 _cell.length_c 334.921 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # _chem_comp.formula 'C26 H26 Cl N3 O4' _chem_comp.formula_weight 479.955 _chem_comp.id C98 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[[3-[3-[(3-chloranyl-4-phenyl-phenyl)methylamino]propylamino]-3-oxidanylidene-propanoyl]amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C17 C98 sing 76 n n C21 C20 C98 doub 77 n y C21 C22 C98 sing 78 n y C17 C18 C98 doub 79 n y C17 C16 C98 sing 80 n y C20 C19 C98 sing 81 n y C18 C13 C98 sing 82 n y C22 C23 C98 doub 83 n y C19 C16 C98 sing 84 n n C19 C24 C98 doub 85 n y C23 C24 C98 sing 86 n y C16 C15 C98 doub 87 n y C13 C12 C98 sing 88 n n C13 C14 C98 doub 89 n y C12 N2 C98 sing 90 n n C15 C14 C98 sing 91 n y C11 N2 C98 sing 92 n n C11 C10 C98 sing 93 n n C9 C10 C98 sing 94 n n C9 N1 C98 sing 95 n n N1 C8 C98 sing 96 n n O3 C8 C98 doub 97 n n C8 C7 C98 sing 98 n n C7 C6 C98 sing 99 n n C6 N C98 sing 100 n n C6 O2 C98 doub 101 n n N C5 C98 sing 102 n n C5 C25 C98 doub 103 n y C5 C4 C98 sing 104 n y C25 C1 C98 sing 105 n y O C C98 doub 106 n n C4 C3 C98 doub 107 n y C1 C C98 sing 108 n n C1 C2 C98 doub 109 n y C O1 C98 sing 110 n n C3 C2 C98 sing 111 n y C24 H1 C98 sing 112 n n C23 H2 C98 sing 113 n n C22 H3 C98 sing 114 n n C21 H4 C98 sing 115 n n C20 H5 C98 sing 116 n n C15 H6 C98 sing 117 n n C14 H7 C98 sing 118 n n C18 H8 C98 sing 119 n n C12 H9 C98 sing 120 n n C12 H10 C98 sing 121 n n N2 H11 C98 sing 122 n n C11 H13 C98 sing 123 n n C11 H14 C98 sing 124 n n C10 H15 C98 sing 125 n n C10 H16 C98 sing 126 n n C9 H17 C98 sing 127 n n C9 H18 C98 sing 128 n n N1 H19 C98 sing 129 n n C7 H20 C98 sing 130 n n C7 H21 C98 sing 131 n n N H22 C98 sing 132 n n C4 H23 C98 sing 133 n n C3 H24 C98 sing 134 n n C2 H25 C98 sing 135 n n C25 H26 C98 sing 136 n n O1 H27 C98 sing 137 n n # _atom_sites.entry_id 5MO8 _atom_sites.fract_transf_matrix[1][1] 0.015481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 401 1 ACT ACT . D 2 ACT A 1 402 2 ACT ACT . E 2 ACT A 1 403 3 ACT ACT . F 3 C98 A 1 404 1 C98 C98 . G 4 PO4 A 1 405 1 PO4 PO4 . H 3 C98 B 1 401 2 C98 C98 . I 4 PO4 B 1 402 2 PO4 PO4 . J 5 HOH A 1 501 127 HOH HOH . J 5 HOH A 2 502 175 HOH HOH . J 5 HOH A 3 503 100 HOH HOH . J 5 HOH A 4 504 80 HOH HOH . J 5 HOH A 5 505 30 HOH HOH . J 5 HOH A 6 506 78 HOH HOH . J 5 HOH A 7 507 104 HOH HOH . J 5 HOH A 8 508 94 HOH HOH . J 5 HOH A 9 509 251 HOH HOH . J 5 HOH A 10 510 35 HOH HOH . J 5 HOH A 11 511 21 HOH HOH . J 5 HOH A 12 512 42 HOH HOH . J 5 HOH A 13 513 55 HOH HOH . J 5 HOH A 14 514 173 HOH HOH . J 5 HOH A 15 515 31 HOH HOH . J 5 HOH A 16 516 233 HOH HOH . J 5 HOH A 17 517 16 HOH HOH . J 5 HOH A 18 518 38 HOH HOH . J 5 HOH A 19 519 84 HOH HOH . J 5 HOH A 20 520 8 HOH HOH . J 5 HOH A 21 521 11 HOH HOH . J 5 HOH A 22 522 33 HOH HOH . J 5 HOH A 23 523 32 HOH HOH . J 5 HOH A 24 524 18 HOH HOH . J 5 HOH A 25 525 157 HOH HOH . J 5 HOH A 26 526 72 HOH HOH . J 5 HOH A 27 527 184 HOH HOH . J 5 HOH A 28 528 159 HOH HOH . J 5 HOH A 29 529 136 HOH HOH . J 5 HOH A 30 530 253 HOH HOH . J 5 HOH A 31 531 137 HOH HOH . J 5 HOH A 32 532 53 HOH HOH . J 5 HOH A 33 533 44 HOH HOH . J 5 HOH A 34 534 246 HOH HOH . J 5 HOH A 35 535 186 HOH HOH . J 5 HOH A 36 536 112 HOH HOH . J 5 HOH A 37 537 82 HOH HOH . J 5 HOH A 38 538 66 HOH HOH . J 5 HOH A 39 539 50 HOH HOH . J 5 HOH A 40 540 238 HOH HOH . J 5 HOH A 41 541 95 HOH HOH . J 5 HOH A 42 542 128 HOH HOH . J 5 HOH A 43 543 93 HOH HOH . J 5 HOH A 44 544 150 HOH HOH . J 5 HOH A 45 545 99 HOH HOH . J 5 HOH A 46 546 58 HOH HOH . J 5 HOH A 47 547 73 HOH HOH . J 5 HOH A 48 548 90 HOH HOH . J 5 HOH A 49 549 179 HOH HOH . J 5 HOH A 50 550 13 HOH HOH . J 5 HOH A 51 551 109 HOH HOH . J 5 HOH A 52 552 210 HOH HOH . J 5 HOH A 53 553 171 HOH HOH . J 5 HOH A 54 554 147 HOH HOH . J 5 HOH A 55 555 254 HOH HOH . J 5 HOH A 56 556 260 HOH HOH . J 5 HOH A 57 557 10 HOH HOH . J 5 HOH A 58 558 20 HOH HOH . J 5 HOH A 59 559 231 HOH HOH . J 5 HOH A 60 560 164 HOH HOH . J 5 HOH A 61 561 220 HOH HOH . J 5 HOH A 62 562 98 HOH HOH . J 5 HOH A 63 563 168 HOH HOH . J 5 HOH A 64 564 143 HOH HOH . J 5 HOH A 65 565 12 HOH HOH . J 5 HOH A 66 566 4 HOH HOH . J 5 HOH A 67 567 9 HOH HOH . J 5 HOH A 68 568 152 HOH HOH . J 5 HOH A 69 569 22 HOH HOH . J 5 HOH A 70 570 92 HOH HOH . J 5 HOH A 71 571 37 HOH HOH . J 5 HOH A 72 572 40 HOH HOH . J 5 HOH A 73 573 117 HOH HOH . J 5 HOH A 74 574 79 HOH HOH . J 5 HOH A 75 575 5 HOH HOH . J 5 HOH A 76 576 89 HOH HOH . J 5 HOH A 77 577 61 HOH HOH . J 5 HOH A 78 578 141 HOH HOH . J 5 HOH A 79 579 17 HOH HOH . J 5 HOH A 80 580 206 HOH HOH . J 5 HOH A 81 581 2 HOH HOH . J 5 HOH A 82 582 34 HOH HOH . J 5 HOH A 83 583 114 HOH HOH . J 5 HOH A 84 584 190 HOH HOH . J 5 HOH A 85 585 41 HOH HOH . J 5 HOH A 86 586 187 HOH HOH . J 5 HOH A 87 587 139 HOH HOH . J 5 HOH A 88 588 105 HOH HOH . J 5 HOH A 89 589 154 HOH HOH . J 5 HOH A 90 590 101 HOH HOH . J 5 HOH A 91 591 161 HOH HOH . J 5 HOH A 92 592 174 HOH HOH . J 5 HOH A 93 593 54 HOH HOH . J 5 HOH A 94 594 15 HOH HOH . J 5 HOH A 95 595 240 HOH HOH . J 5 HOH A 96 596 75 HOH HOH . J 5 HOH A 97 597 36 HOH HOH . J 5 HOH A 98 598 229 HOH HOH . J 5 HOH A 99 599 258 HOH HOH . J 5 HOH A 100 600 227 HOH HOH . J 5 HOH A 101 601 191 HOH HOH . J 5 HOH A 102 602 123 HOH HOH . J 5 HOH A 103 603 52 HOH HOH . J 5 HOH A 104 604 140 HOH HOH . J 5 HOH A 105 605 148 HOH HOH . J 5 HOH A 106 606 3 HOH HOH . J 5 HOH A 107 607 87 HOH HOH . J 5 HOH A 108 608 185 HOH HOH . J 5 HOH A 109 609 135 HOH HOH . J 5 HOH A 110 610 158 HOH HOH . J 5 HOH A 111 611 57 HOH HOH . J 5 HOH A 112 612 65 HOH HOH . J 5 HOH A 113 613 48 HOH HOH . J 5 HOH A 114 614 181 HOH HOH . J 5 HOH A 115 615 250 HOH HOH . J 5 HOH A 116 616 85 HOH HOH . J 5 HOH A 117 617 74 HOH HOH . J 5 HOH A 118 618 130 HOH HOH . J 5 HOH A 119 619 63 HOH HOH . J 5 HOH A 120 620 134 HOH HOH . J 5 HOH A 121 621 201 HOH HOH . J 5 HOH A 122 622 218 HOH HOH . J 5 HOH A 123 623 111 HOH HOH . J 5 HOH A 124 624 169 HOH HOH . J 5 HOH A 125 625 71 HOH HOH . J 5 HOH A 126 626 46 HOH HOH . J 5 HOH A 127 627 26 HOH HOH . J 5 HOH A 128 628 67 HOH HOH . J 5 HOH A 129 629 125 HOH HOH . J 5 HOH A 130 630 234 HOH HOH . J 5 HOH A 131 631 197 HOH HOH . J 5 HOH A 132 632 195 HOH HOH . J 5 HOH A 133 633 29 HOH HOH . J 5 HOH A 134 634 225 HOH HOH . J 5 HOH A 135 635 242 HOH HOH . J 5 HOH A 136 636 121 HOH HOH . J 5 HOH A 137 637 81 HOH HOH . J 5 HOH A 138 638 132 HOH HOH . J 5 HOH A 139 639 237 HOH HOH . J 5 HOH A 140 640 193 HOH HOH . J 5 HOH A 141 641 199 HOH HOH . J 5 HOH A 142 642 88 HOH HOH . J 5 HOH A 143 643 226 HOH HOH . J 5 HOH A 144 644 257 HOH HOH . J 5 HOH A 145 645 166 HOH HOH . J 5 HOH A 146 646 68 HOH HOH . J 5 HOH A 147 647 212 HOH HOH . J 5 HOH A 148 648 223 HOH HOH . J 5 HOH A 149 649 77 HOH HOH . J 5 HOH A 150 650 45 HOH HOH . J 5 HOH A 151 651 200 HOH HOH . J 5 HOH A 152 652 170 HOH HOH . J 5 HOH A 153 653 248 HOH HOH . J 5 HOH A 154 654 83 HOH HOH . J 5 HOH A 155 655 107 HOH HOH . J 5 HOH A 156 656 69 HOH HOH . J 5 HOH A 157 657 163 HOH HOH . J 5 HOH A 158 658 155 HOH HOH . J 5 HOH A 159 659 213 HOH HOH . J 5 HOH A 160 660 216 HOH HOH . J 5 HOH A 161 661 119 HOH HOH . J 5 HOH A 162 662 244 HOH HOH . J 5 HOH A 163 663 177 HOH HOH . J 5 HOH A 164 664 178 HOH HOH . J 5 HOH A 165 665 176 HOH HOH . K 5 HOH B 1 501 255 HOH HOH . K 5 HOH B 2 502 249 HOH HOH . K 5 HOH B 3 503 232 HOH HOH . K 5 HOH B 4 504 252 HOH HOH . K 5 HOH B 5 505 205 HOH HOH . K 5 HOH B 6 506 256 HOH HOH . K 5 HOH B 7 507 108 HOH HOH . K 5 HOH B 8 508 243 HOH HOH . K 5 HOH B 9 509 91 HOH HOH . K 5 HOH B 10 510 47 HOH HOH . K 5 HOH B 11 511 153 HOH HOH . K 5 HOH B 12 512 209 HOH HOH . K 5 HOH B 13 513 221 HOH HOH . K 5 HOH B 14 514 239 HOH HOH . K 5 HOH B 15 515 102 HOH HOH . K 5 HOH B 16 516 165 HOH HOH . K 5 HOH B 17 517 118 HOH HOH . K 5 HOH B 18 518 70 HOH HOH . K 5 HOH B 19 519 236 HOH HOH . K 5 HOH B 20 520 39 HOH HOH . K 5 HOH B 21 521 189 HOH HOH . K 5 HOH B 22 522 198 HOH HOH . K 5 HOH B 23 523 56 HOH HOH . K 5 HOH B 24 524 86 HOH HOH . K 5 HOH B 25 525 162 HOH HOH . K 5 HOH B 26 526 97 HOH HOH . K 5 HOH B 27 527 259 HOH HOH . K 5 HOH B 28 528 96 HOH HOH . K 5 HOH B 29 529 106 HOH HOH . K 5 HOH B 30 530 204 HOH HOH . K 5 HOH B 31 531 217 HOH HOH . K 5 HOH B 32 532 151 HOH HOH . K 5 HOH B 33 533 211 HOH HOH . K 5 HOH B 34 534 146 HOH HOH . K 5 HOH B 35 535 116 HOH HOH . K 5 HOH B 36 536 192 HOH HOH . K 5 HOH B 37 537 120 HOH HOH . K 5 HOH B 38 538 235 HOH HOH . K 5 HOH B 39 539 194 HOH HOH . K 5 HOH B 40 540 230 HOH HOH . K 5 HOH B 41 541 188 HOH HOH . K 5 HOH B 42 542 133 HOH HOH . K 5 HOH B 43 543 228 HOH HOH . K 5 HOH B 44 544 172 HOH HOH . K 5 HOH B 45 545 208 HOH HOH . K 5 HOH B 46 546 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL C98 . . . H 3 -3.859 166.78 400.103 1 93.09 ? CL C98 401 B 1 HETATM 2 C C17 C98 . . . H 3 -3.146 165.237 399.765 1 93.32 ? C17 C98 401 B 1 HETATM 3 C C16 C98 . . . H 3 -3.913 164.084 399.87 1 92.54 ? C16 C98 401 B 1 HETATM 4 C C19 C98 . . . H 3 -5.354 164.102 400.247 1 93.78 ? C19 C98 401 B 1 HETATM 5 C C24 C98 . . . H 3 -6.308 164.659 399.398 1 94.26 ? C24 C98 401 B 1 HETATM 6 C C23 C98 . . . H 3 -7.639 164.709 399.768 1 95.04 ? C23 C98 401 B 1 HETATM 7 C C22 C98 . . . H 3 -8.043 164.203 400.982 1 95.03 ? C22 C98 401 B 1 HETATM 8 C C21 C98 . . . H 3 -7.116 163.642 401.83 1 95.18 ? C21 C98 401 B 1 HETATM 9 C C20 C98 . . . H 3 -5.781 163.589 401.469 1 95.16 ? C20 C98 401 B 1 HETATM 10 C C15 C98 . . . H 3 -3.288 162.868 399.606 1 90.93 ? C15 C98 401 B 1 HETATM 11 C C14 C98 . . . H 3 -1.952 162.821 399.25 1 90.49 ? C14 C98 401 B 1 HETATM 12 C C18 C98 . . . H 3 -1.815 165.192 399.404 1 92.21 ? C18 C98 401 B 1 HETATM 13 C C13 C98 . . . H 3 -1.198 163.977 399.14 1 90.03 ? C13 C98 401 B 1 HETATM 14 C C12 C98 . . . H 3 0.258 163.919 398.743 1 87.29 ? C12 C98 401 B 1 HETATM 15 N N2 C98 . . . H 3 0.625 162.664 398.084 1 84.16 ? N2 C98 401 B 1 HETATM 16 C C11 C98 . . . H 3 2.047 162.347 398.213 1 82.88 ? C11 C98 401 B 1 HETATM 17 C C10 C98 . . . H 3 2.579 161.556 397.031 1 81.71 ? C10 C98 401 B 1 HETATM 18 C C9 C98 . . . H 3 4.068 161.304 397.174 1 81.07 ? C9 C98 401 B 1 HETATM 19 N N1 C98 . . . H 3 4.623 160.441 396.141 1 79.93 ? N1 C98 401 B 1 HETATM 20 C C8 C98 . . . H 3 5.077 160.902 394.977 1 78.99 ? C8 C98 401 B 1 HETATM 21 O O3 C98 . . . H 3 4.732 161.983 394.509 1 80.23 ? O3 C98 401 B 1 HETATM 22 C C7 C98 . . . H 3 6.082 160.025 394.263 1 76.53 ? C7 C98 401 B 1 HETATM 23 C C6 C98 . . . H 3 5.758 159.908 392.79 1 72.93 ? C6 C98 401 B 1 HETATM 24 O O2 C98 . . . H 3 5.677 160.902 392.075 1 75.75 ? O2 C98 401 B 1 HETATM 25 N N C98 . . . H 3 5.536 158.651 392.359 1 63.82 ? N C98 401 B 1 HETATM 26 C C5 C98 . . . H 3 4.968 158.253 391.128 1 55.92 ? C5 C98 401 B 1 HETATM 27 C C4 C98 . . . H 3 4.621 159.192 390.167 1 49.66 ? C4 C98 401 B 1 HETATM 28 C C3 C98 . . . H 3 3.891 158.804 389.057 1 49.86 ? C3 C98 401 B 1 HETATM 29 C C2 C98 . . . H 3 3.499 157.486 388.905 1 48.09 ? C2 C98 401 B 1 HETATM 30 C C25 C98 . . . H 3 4.608 156.923 390.955 1 52.58 ? C25 C98 401 B 1 HETATM 31 C C1 C98 . . . H 3 3.846 156.537 389.857 1 47.84 ? C1 C98 401 B 1 HETATM 32 C C C98 . . . H 3 3.282 155.163 389.8 1 41.97 ? C C98 401 B 1 HETATM 33 O O1 C98 . . . H 3 2.423 154.853 388.995 1 37.95 ? O1 C98 401 B 1 HETATM 34 O O C98 . . . H 3 3.719 154.366 390.722 1 42.92 ? O C98 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #