data_5MPC # _model_server_result.job_id 8PrMnve0flXISA3ehKMEOQ _model_server_result.datetime_utc '2025-03-06 14:11:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":501}' # _entry.id 5MPC # _exptl.entry_id 5MPC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 YA N N ? 35 EB N N ? 35 GB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 CA OG1 THR 257 H THR 257 1_555 XA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 WA O2G ATP . H ATP 501 1_555 XA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 WA O2B ATP . H ATP 501 1_555 XA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 WA O3B ATP . H ATP 501 1_555 XA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc5 DA OG1 THR 230 I THR 230 1_555 ZA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc6 YA O2G ATP . I ATP 501 1_555 ZA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 YA O2B ATP . I ATP 501 1_555 ZA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc8 YA O3B ATP . I ATP 501 1_555 ZA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc9 AB O1B ADP . K ADP 501 1_555 BB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 FA OG1 THR 229 L THR 229 1_555 DB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 CB O3B ADP . L ADP 501 1_555 DB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc12 GA OG1 THR 229 M THR 229 1_555 FB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 EB O2G ATP . M ATP 501 1_555 FB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 EB O2B ATP . M ATP 501 1_555 FB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 HA OG1 THR 196 J THR 196 1_555 HB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc16 GB O1G ATP . J ATP 501 1_555 HB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc17 GB O2B ATP . J ATP 501 1_555 HB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc18 GB O3B ATP . J ATP 501 1_555 HB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 5MPC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ATP H 1 501 501 ATP ATP . XA 36 MG H 1 502 502 MG MG . YA 35 ATP I 1 501 501 ATP ATP . ZA 36 MG I 1 502 502 MG MG . AB 37 ADP K 1 501 501 ADP ADP . BB 36 MG K 1 502 502 MG MG . CB 37 ADP L 1 501 501 ADP ADP . DB 36 MG L 1 502 502 MG MG . EB 35 ATP M 1 501 501 ATP ATP . FB 36 MG M 1 502 502 MG MG . GB 35 ATP J 1 501 501 ATP ATP . HB 36 MG J 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . WA 35 177.727 268.707 275.391 1 1 ? PG ATP 501 H 1 HETATM 2 O O1G ATP . . . WA 35 177.157 269.589 274.272 1 1 ? O1G ATP 501 H 1 HETATM 3 O O2G ATP . . . WA 35 176.696 268.307 276.46 1 1 ? O2G ATP 501 H 1 HETATM 4 O O3G ATP . . . WA 35 178.876 269.385 276.037 1 1 ? O3G ATP 501 H 1 HETATM 5 P PB ATP . . . WA 35 178.601 265.594 274.54 1 1 ? PB ATP 501 H 1 HETATM 6 O O1B ATP . . . WA 35 180.099 265.317 274.745 1 1 ? O1B ATP 501 H 1 HETATM 7 O O2B ATP . . . WA 35 177.652 264.931 275.484 1 1 ? O2B ATP 501 H 1 HETATM 8 O O3B ATP . . . WA 35 178.343 267.283 274.685 1 1 ? O3B ATP 501 H 1 HETATM 9 P PA ATP . . . WA 35 177.002 264.162 272.059 1 1 ? PA ATP 501 H 1 HETATM 10 O O1A ATP . . . WA 35 175.691 264.781 271.937 1 1 ? O1A ATP 501 H 1 HETATM 11 O O2A ATP . . . WA 35 176.929 262.903 272.81 1 1 ? O2A ATP 501 H 1 HETATM 12 O O3A ATP . . . WA 35 177.96 265.177 272.944 1 1 ? O3A ATP 501 H 1 HETATM 13 O O5' ATP . . . WA 35 177.714 264.073 270.669 1 1 ? O5' ATP 501 H 1 HETATM 14 C C5' ATP . . . WA 35 177.79 265.278 269.923 1 1 ? C5' ATP 501 H 1 HETATM 15 C C4' ATP . . . WA 35 178.487 265.067 268.562 1 1 ? C4' ATP 501 H 1 HETATM 16 O O4' ATP . . . WA 35 179.702 264.243 268.592 1 1 ? O4' ATP 501 H 1 HETATM 17 C C3' ATP . . . WA 35 177.651 264.421 267.487 1 1 ? C3' ATP 501 H 1 HETATM 18 O O3' ATP . . . WA 35 177.874 265.021 266.201 1 1 ? O3' ATP 501 H 1 HETATM 19 C C2' ATP . . . WA 35 178.102 262.898 267.558 1 1 ? C2' ATP 501 H 1 HETATM 20 O O2' ATP . . . WA 35 177.896 262.193 266.326 1 1 ? O2' ATP 501 H 1 HETATM 21 C C1' ATP . . . WA 35 179.56 263.011 267.855 1 1 ? C1' ATP 501 H 1 HETATM 22 N N9 ATP . . . WA 35 180.035 261.898 268.588 1 1 ? N9 ATP 501 H 1 HETATM 23 C C8 ATP . . . WA 35 180.097 261.724 269.928 1 1 ? C8 ATP 501 H 1 HETATM 24 N N7 ATP . . . WA 35 180.611 260.576 270.238 1 1 ? N7 ATP 501 H 1 HETATM 25 C C5 ATP . . . WA 35 180.803 259.936 269.09 1 1 ? C5 ATP 501 H 1 HETATM 26 C C6 ATP . . . WA 35 181.216 258.63 268.882 1 1 ? C6 ATP 501 H 1 HETATM 27 N N6 ATP . . . WA 35 181.603 257.822 269.901 1 1 ? N6 ATP 501 H 1 HETATM 28 N N1 ATP . . . WA 35 181.041 258.188 267.581 1 1 ? N1 ATP 501 H 1 HETATM 29 C C2 ATP . . . WA 35 180.656 259.003 266.639 1 1 ? C2 ATP 501 H 1 HETATM 30 N N3 ATP . . . WA 35 180.39 260.323 266.739 1 1 ? N3 ATP 501 H 1 HETATM 31 C C4 ATP . . . WA 35 180.422 260.71 267.995 1 1 ? C4 ATP 501 H 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 155 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #