data_5MPJ # _model_server_result.job_id q5esG3SW3MR5WLL81b1i8Q _model_server_result.datetime_utc '2024-11-28 08:57:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5MPJ # _exptl.entry_id 5MPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MPJ _cell.length_a 64.76 _cell.length_b 68.46 _cell.length_c 334.74 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 267 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 244 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id O35 _struct_conn.ptnr2_label_comp_id IHP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IHP _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.368 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5MPJ _atom_sites.fract_transf_matrix[1][1] 0.015442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 1 ADP ADP . D 3 IHP A 1 402 2 IHP I6P . E 4 J2P A 1 403 1 J2P C04 . F 5 HOH A 1 501 196 HOH HOH . F 5 HOH A 2 502 52 HOH HOH . F 5 HOH A 3 503 90 HOH HOH . F 5 HOH A 4 504 80 HOH HOH . F 5 HOH A 5 505 121 HOH HOH . F 5 HOH A 6 506 9 HOH HOH . F 5 HOH A 7 507 217 HOH HOH . F 5 HOH A 8 508 32 HOH HOH . F 5 HOH A 9 509 8 HOH HOH . F 5 HOH A 10 510 25 HOH HOH . F 5 HOH A 11 511 4 HOH HOH . F 5 HOH A 12 512 35 HOH HOH . F 5 HOH A 13 513 197 HOH HOH . F 5 HOH A 14 514 81 HOH HOH . F 5 HOH A 15 515 160 HOH HOH . F 5 HOH A 16 516 107 HOH HOH . F 5 HOH A 17 517 212 HOH HOH . F 5 HOH A 18 518 178 HOH HOH . F 5 HOH A 19 519 198 HOH HOH . F 5 HOH A 20 520 12 HOH HOH . F 5 HOH A 21 521 51 HOH HOH . F 5 HOH A 22 522 40 HOH HOH . F 5 HOH A 23 523 6 HOH HOH . F 5 HOH A 24 524 38 HOH HOH . F 5 HOH A 25 525 83 HOH HOH . F 5 HOH A 26 526 218 HOH HOH . F 5 HOH A 27 527 195 HOH HOH . F 5 HOH A 28 528 13 HOH HOH . F 5 HOH A 29 529 3 HOH HOH . F 5 HOH A 30 530 155 HOH HOH . F 5 HOH A 31 531 189 HOH HOH . F 5 HOH A 32 532 201 HOH HOH . F 5 HOH A 33 533 98 HOH HOH . F 5 HOH A 34 534 148 HOH HOH . F 5 HOH A 35 535 55 HOH HOH . F 5 HOH A 36 536 59 HOH HOH . F 5 HOH A 37 537 94 HOH HOH . F 5 HOH A 38 538 171 HOH HOH . F 5 HOH A 39 539 20 HOH HOH . F 5 HOH A 40 540 91 HOH HOH . F 5 HOH A 41 541 22 HOH HOH . F 5 HOH A 42 542 181 HOH HOH . F 5 HOH A 43 543 202 HOH HOH . F 5 HOH A 44 544 96 HOH HOH . F 5 HOH A 45 545 48 HOH HOH . F 5 HOH A 46 546 174 HOH HOH . F 5 HOH A 47 547 72 HOH HOH . F 5 HOH A 48 548 33 HOH HOH . F 5 HOH A 49 549 10 HOH HOH . F 5 HOH A 50 550 71 HOH HOH . F 5 HOH A 51 551 49 HOH HOH . F 5 HOH A 52 552 29 HOH HOH . F 5 HOH A 53 553 61 HOH HOH . F 5 HOH A 54 554 190 HOH HOH . F 5 HOH A 55 555 76 HOH HOH . F 5 HOH A 56 556 200 HOH HOH . F 5 HOH A 57 557 97 HOH HOH . F 5 HOH A 58 558 53 HOH HOH . F 5 HOH A 59 559 116 HOH HOH . F 5 HOH A 60 560 2 HOH HOH . F 5 HOH A 61 561 19 HOH HOH . F 5 HOH A 62 562 5 HOH HOH . F 5 HOH A 63 563 11 HOH HOH . F 5 HOH A 64 564 211 HOH HOH . F 5 HOH A 65 565 170 HOH HOH . F 5 HOH A 66 566 56 HOH HOH . F 5 HOH A 67 567 119 HOH HOH . F 5 HOH A 68 568 144 HOH HOH . F 5 HOH A 69 569 117 HOH HOH . F 5 HOH A 70 570 66 HOH HOH . F 5 HOH A 71 571 16 HOH HOH . F 5 HOH A 72 572 213 HOH HOH . F 5 HOH A 73 573 100 HOH HOH . F 5 HOH A 74 574 142 HOH HOH . F 5 HOH A 75 575 41 HOH HOH . F 5 HOH A 76 576 216 HOH HOH . F 5 HOH A 77 577 136 HOH HOH . F 5 HOH A 78 578 67 HOH HOH . F 5 HOH A 79 579 37 HOH HOH . F 5 HOH A 80 580 105 HOH HOH . F 5 HOH A 81 581 63 HOH HOH . F 5 HOH A 82 582 183 HOH HOH . F 5 HOH A 83 583 101 HOH HOH . F 5 HOH A 84 584 79 HOH HOH . F 5 HOH A 85 585 47 HOH HOH . F 5 HOH A 86 586 132 HOH HOH . F 5 HOH A 87 587 65 HOH HOH . F 5 HOH A 88 588 131 HOH HOH . F 5 HOH A 89 589 26 HOH HOH . F 5 HOH A 90 590 124 HOH HOH . F 5 HOH A 91 591 172 HOH HOH . F 5 HOH A 92 592 168 HOH HOH . F 5 HOH A 93 593 78 HOH HOH . F 5 HOH A 94 594 54 HOH HOH . F 5 HOH A 95 595 69 HOH HOH . F 5 HOH A 96 596 210 HOH HOH . F 5 HOH A 97 597 50 HOH HOH . F 5 HOH A 98 598 87 HOH HOH . F 5 HOH A 99 599 99 HOH HOH . F 5 HOH A 100 600 150 HOH HOH . F 5 HOH A 101 601 177 HOH HOH . F 5 HOH A 102 602 43 HOH HOH . F 5 HOH A 103 603 162 HOH HOH . F 5 HOH A 104 604 7 HOH HOH . F 5 HOH A 105 605 157 HOH HOH . F 5 HOH A 106 606 128 HOH HOH . F 5 HOH A 107 607 130 HOH HOH . F 5 HOH A 108 608 92 HOH HOH . F 5 HOH A 109 609 44 HOH HOH . F 5 HOH A 110 610 184 HOH HOH . F 5 HOH A 111 611 86 HOH HOH . F 5 HOH A 112 612 164 HOH HOH . F 5 HOH A 113 613 193 HOH HOH . F 5 HOH A 114 614 82 HOH HOH . F 5 HOH A 115 615 46 HOH HOH . F 5 HOH A 116 616 135 HOH HOH . F 5 HOH A 117 617 114 HOH HOH . F 5 HOH A 118 618 203 HOH HOH . F 5 HOH A 119 619 113 HOH HOH . F 5 HOH A 120 620 187 HOH HOH . F 5 HOH A 121 621 21 HOH HOH . F 5 HOH A 122 622 125 HOH HOH . F 5 HOH A 123 623 182 HOH HOH . F 5 HOH A 124 624 215 HOH HOH . F 5 HOH A 125 625 147 HOH HOH . F 5 HOH A 126 626 138 HOH HOH . F 5 HOH A 127 627 70 HOH HOH . F 5 HOH A 128 628 62 HOH HOH . F 5 HOH A 129 629 57 HOH HOH . F 5 HOH A 130 630 185 HOH HOH . F 5 HOH A 131 631 166 HOH HOH . F 5 HOH A 132 632 207 HOH HOH . F 5 HOH A 133 633 118 HOH HOH . F 5 HOH A 134 634 208 HOH HOH . F 5 HOH A 135 635 165 HOH HOH . F 5 HOH A 136 636 127 HOH HOH . F 5 HOH A 137 637 140 HOH HOH . F 5 HOH A 138 638 152 HOH HOH . F 5 HOH A 139 639 141 HOH HOH . G 5 HOH B 1 401 219 HOH HOH . G 5 HOH B 2 402 220 HOH HOH . G 5 HOH B 3 403 60 HOH HOH . G 5 HOH B 4 404 95 HOH HOH . G 5 HOH B 5 405 159 HOH HOH . G 5 HOH B 6 406 154 HOH HOH . G 5 HOH B 7 407 68 HOH HOH . G 5 HOH B 8 408 133 HOH HOH . G 5 HOH B 9 409 73 HOH HOH . G 5 HOH B 10 410 191 HOH HOH . G 5 HOH B 11 411 58 HOH HOH . G 5 HOH B 12 412 199 HOH HOH . G 5 HOH B 13 413 143 HOH HOH . G 5 HOH B 14 414 77 HOH HOH . G 5 HOH B 15 415 123 HOH HOH . G 5 HOH B 16 416 194 HOH HOH . G 5 HOH B 17 417 36 HOH HOH . G 5 HOH B 18 418 45 HOH HOH . G 5 HOH B 19 419 214 HOH HOH . G 5 HOH B 20 420 84 HOH HOH . G 5 HOH B 21 421 104 HOH HOH . G 5 HOH B 22 422 110 HOH HOH . G 5 HOH B 23 423 28 HOH HOH . G 5 HOH B 24 424 15 HOH HOH . G 5 HOH B 25 425 179 HOH HOH . G 5 HOH B 26 426 75 HOH HOH . G 5 HOH B 27 427 122 HOH HOH . G 5 HOH B 28 428 74 HOH HOH . G 5 HOH B 29 429 206 HOH HOH . G 5 HOH B 30 430 169 HOH HOH . G 5 HOH B 31 431 42 HOH HOH . G 5 HOH B 32 432 126 HOH HOH . G 5 HOH B 33 433 161 HOH HOH . G 5 HOH B 34 434 175 HOH HOH . G 5 HOH B 35 435 120 HOH HOH . G 5 HOH B 36 436 129 HOH HOH . G 5 HOH B 37 437 180 HOH HOH . G 5 HOH B 38 438 163 HOH HOH . G 5 HOH B 39 439 102 HOH HOH . G 5 HOH B 40 440 115 HOH HOH . G 5 HOH B 41 441 156 HOH HOH . G 5 HOH B 42 442 188 HOH HOH . G 5 HOH B 43 443 173 HOH HOH . G 5 HOH B 44 444 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 16.4 131.361 358.86 1 68.55 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . C 2 15.749 131.669 357.506 1 67.89 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . C 2 17.081 130.021 358.837 1 68.71 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . C 2 17.428 132.479 359.245 1 66.15 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . C 2 13.932 132.376 360.227 1 57.28 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . C 2 13.625 133.454 359.171 1 60.57 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . C 2 14.146 133.121 361.488 1 55.21 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . C 2 15.194 131.446 359.909 1 64.09 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . C 2 12.68 131.358 360.129 1 56.37 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . C 2 12.342 130.585 358.956 1 58.39 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . C 2 10.842 130.494 358.783 1 61.42 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . C 2 10.228 129.949 359.977 1 61.5 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . C 2 10.1 131.806 358.552 1 64.68 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . C 2 10.269 132.381 357.258 1 66.25 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . C 2 8.677 131.427 358.974 1 62.97 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . C 2 8.031 130.588 358.018 1 65.25 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . C 2 8.973 130.578 360.215 1 60.07 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . C 2 9.033 131.337 361.473 1 57.51 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . C 2 10.154 131.831 362.094 1 56.18 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . C 2 9.905 132.534 363.173 1 55.44 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . C 2 8.521 132.497 363.276 1 50.68 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . C 2 7.623 133.056 364.209 1 49.61 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . C 2 8.002 133.827 365.232 1 49.36 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . C 2 6.3 132.829 364.026 1 47.37 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . C 2 5.912 132.096 362.975 1 45.02 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . C 2 6.666 131.509 362.038 1 47.57 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . C 2 7.97 131.754 362.241 1 52.29 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #