data_5MPJ # _model_server_result.job_id VscnUovyc26tFRezjNN4yA _model_server_result.datetime_utc '2024-11-24 15:40:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5MPJ # _exptl.entry_id 5MPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MPJ _cell.length_a 64.76 _cell.length_b 68.46 _cell.length_c 334.74 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 267 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 244 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id O35 _struct_conn.ptnr2_label_comp_id IHP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IHP _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.368 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 196 n n C1 C6 IHP sing 197 n n C1 O11 IHP sing 198 n n C1 H1 IHP sing 199 n n C2 C3 IHP sing 200 n n C2 O12 IHP sing 201 n n C2 H2 IHP sing 202 n n C3 C4 IHP sing 203 n n C3 O13 IHP sing 204 n n C3 H3 IHP sing 205 n n C4 C5 IHP sing 206 n n C4 O14 IHP sing 207 n n C4 H4 IHP sing 208 n n C5 C6 IHP sing 209 n n C5 O15 IHP sing 210 n n C5 H5 IHP sing 211 n n C6 O16 IHP sing 212 n n C6 H6 IHP sing 213 n n O11 P1 IHP sing 214 n n P1 O21 IHP doub 215 n n P1 O31 IHP sing 216 n n P1 O41 IHP sing 217 n n O31 H31 IHP sing 218 n n O41 H41 IHP sing 219 n n O12 P2 IHP sing 220 n n P2 O22 IHP doub 221 n n P2 O32 IHP sing 222 n n P2 O42 IHP sing 223 n n O32 H32 IHP sing 224 n n O42 H42 IHP sing 225 n n O13 P3 IHP sing 226 n n P3 O23 IHP doub 227 n n P3 O33 IHP sing 228 n n P3 O43 IHP sing 229 n n O33 H33 IHP sing 230 n n O43 H43 IHP sing 231 n n O14 P4 IHP sing 232 n n P4 O24 IHP doub 233 n n P4 O34 IHP sing 234 n n P4 O44 IHP sing 235 n n O34 H34 IHP sing 236 n n O44 H44 IHP sing 237 n n O15 P5 IHP sing 238 n n P5 O25 IHP doub 239 n n P5 O35 IHP sing 240 n n P5 O45 IHP sing 241 n n O35 H35 IHP sing 242 n n O45 H45 IHP sing 243 n n O16 P6 IHP sing 244 n n P6 O26 IHP doub 245 n n P6 O36 IHP sing 246 n n P6 O46 IHP sing 247 n n O36 H36 IHP sing 248 n n O46 H46 IHP sing 249 n n # _atom_sites.entry_id 5MPJ _atom_sites.fract_transf_matrix[1][1] 0.015442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 1 ADP ADP . D 3 IHP A 1 402 2 IHP I6P . E 4 J2P A 1 403 1 J2P C04 . F 5 HOH A 1 501 196 HOH HOH . F 5 HOH A 2 502 52 HOH HOH . F 5 HOH A 3 503 90 HOH HOH . F 5 HOH A 4 504 80 HOH HOH . F 5 HOH A 5 505 121 HOH HOH . F 5 HOH A 6 506 9 HOH HOH . F 5 HOH A 7 507 217 HOH HOH . F 5 HOH A 8 508 32 HOH HOH . F 5 HOH A 9 509 8 HOH HOH . F 5 HOH A 10 510 25 HOH HOH . F 5 HOH A 11 511 4 HOH HOH . F 5 HOH A 12 512 35 HOH HOH . F 5 HOH A 13 513 197 HOH HOH . F 5 HOH A 14 514 81 HOH HOH . F 5 HOH A 15 515 160 HOH HOH . F 5 HOH A 16 516 107 HOH HOH . F 5 HOH A 17 517 212 HOH HOH . F 5 HOH A 18 518 178 HOH HOH . F 5 HOH A 19 519 198 HOH HOH . F 5 HOH A 20 520 12 HOH HOH . F 5 HOH A 21 521 51 HOH HOH . F 5 HOH A 22 522 40 HOH HOH . F 5 HOH A 23 523 6 HOH HOH . F 5 HOH A 24 524 38 HOH HOH . F 5 HOH A 25 525 83 HOH HOH . F 5 HOH A 26 526 218 HOH HOH . F 5 HOH A 27 527 195 HOH HOH . F 5 HOH A 28 528 13 HOH HOH . F 5 HOH A 29 529 3 HOH HOH . F 5 HOH A 30 530 155 HOH HOH . F 5 HOH A 31 531 189 HOH HOH . F 5 HOH A 32 532 201 HOH HOH . F 5 HOH A 33 533 98 HOH HOH . F 5 HOH A 34 534 148 HOH HOH . F 5 HOH A 35 535 55 HOH HOH . F 5 HOH A 36 536 59 HOH HOH . F 5 HOH A 37 537 94 HOH HOH . F 5 HOH A 38 538 171 HOH HOH . F 5 HOH A 39 539 20 HOH HOH . F 5 HOH A 40 540 91 HOH HOH . F 5 HOH A 41 541 22 HOH HOH . F 5 HOH A 42 542 181 HOH HOH . F 5 HOH A 43 543 202 HOH HOH . F 5 HOH A 44 544 96 HOH HOH . F 5 HOH A 45 545 48 HOH HOH . F 5 HOH A 46 546 174 HOH HOH . F 5 HOH A 47 547 72 HOH HOH . F 5 HOH A 48 548 33 HOH HOH . F 5 HOH A 49 549 10 HOH HOH . F 5 HOH A 50 550 71 HOH HOH . F 5 HOH A 51 551 49 HOH HOH . F 5 HOH A 52 552 29 HOH HOH . F 5 HOH A 53 553 61 HOH HOH . F 5 HOH A 54 554 190 HOH HOH . F 5 HOH A 55 555 76 HOH HOH . F 5 HOH A 56 556 200 HOH HOH . F 5 HOH A 57 557 97 HOH HOH . F 5 HOH A 58 558 53 HOH HOH . F 5 HOH A 59 559 116 HOH HOH . F 5 HOH A 60 560 2 HOH HOH . F 5 HOH A 61 561 19 HOH HOH . F 5 HOH A 62 562 5 HOH HOH . F 5 HOH A 63 563 11 HOH HOH . F 5 HOH A 64 564 211 HOH HOH . F 5 HOH A 65 565 170 HOH HOH . F 5 HOH A 66 566 56 HOH HOH . F 5 HOH A 67 567 119 HOH HOH . F 5 HOH A 68 568 144 HOH HOH . F 5 HOH A 69 569 117 HOH HOH . F 5 HOH A 70 570 66 HOH HOH . F 5 HOH A 71 571 16 HOH HOH . F 5 HOH A 72 572 213 HOH HOH . F 5 HOH A 73 573 100 HOH HOH . F 5 HOH A 74 574 142 HOH HOH . F 5 HOH A 75 575 41 HOH HOH . F 5 HOH A 76 576 216 HOH HOH . F 5 HOH A 77 577 136 HOH HOH . F 5 HOH A 78 578 67 HOH HOH . F 5 HOH A 79 579 37 HOH HOH . F 5 HOH A 80 580 105 HOH HOH . F 5 HOH A 81 581 63 HOH HOH . F 5 HOH A 82 582 183 HOH HOH . F 5 HOH A 83 583 101 HOH HOH . F 5 HOH A 84 584 79 HOH HOH . F 5 HOH A 85 585 47 HOH HOH . F 5 HOH A 86 586 132 HOH HOH . F 5 HOH A 87 587 65 HOH HOH . F 5 HOH A 88 588 131 HOH HOH . F 5 HOH A 89 589 26 HOH HOH . F 5 HOH A 90 590 124 HOH HOH . F 5 HOH A 91 591 172 HOH HOH . F 5 HOH A 92 592 168 HOH HOH . F 5 HOH A 93 593 78 HOH HOH . F 5 HOH A 94 594 54 HOH HOH . F 5 HOH A 95 595 69 HOH HOH . F 5 HOH A 96 596 210 HOH HOH . F 5 HOH A 97 597 50 HOH HOH . F 5 HOH A 98 598 87 HOH HOH . F 5 HOH A 99 599 99 HOH HOH . F 5 HOH A 100 600 150 HOH HOH . F 5 HOH A 101 601 177 HOH HOH . F 5 HOH A 102 602 43 HOH HOH . F 5 HOH A 103 603 162 HOH HOH . F 5 HOH A 104 604 7 HOH HOH . F 5 HOH A 105 605 157 HOH HOH . F 5 HOH A 106 606 128 HOH HOH . F 5 HOH A 107 607 130 HOH HOH . F 5 HOH A 108 608 92 HOH HOH . F 5 HOH A 109 609 44 HOH HOH . F 5 HOH A 110 610 184 HOH HOH . F 5 HOH A 111 611 86 HOH HOH . F 5 HOH A 112 612 164 HOH HOH . F 5 HOH A 113 613 193 HOH HOH . F 5 HOH A 114 614 82 HOH HOH . F 5 HOH A 115 615 46 HOH HOH . F 5 HOH A 116 616 135 HOH HOH . F 5 HOH A 117 617 114 HOH HOH . F 5 HOH A 118 618 203 HOH HOH . F 5 HOH A 119 619 113 HOH HOH . F 5 HOH A 120 620 187 HOH HOH . F 5 HOH A 121 621 21 HOH HOH . F 5 HOH A 122 622 125 HOH HOH . F 5 HOH A 123 623 182 HOH HOH . F 5 HOH A 124 624 215 HOH HOH . F 5 HOH A 125 625 147 HOH HOH . F 5 HOH A 126 626 138 HOH HOH . F 5 HOH A 127 627 70 HOH HOH . F 5 HOH A 128 628 62 HOH HOH . F 5 HOH A 129 629 57 HOH HOH . F 5 HOH A 130 630 185 HOH HOH . F 5 HOH A 131 631 166 HOH HOH . F 5 HOH A 132 632 207 HOH HOH . F 5 HOH A 133 633 118 HOH HOH . F 5 HOH A 134 634 208 HOH HOH . F 5 HOH A 135 635 165 HOH HOH . F 5 HOH A 136 636 127 HOH HOH . F 5 HOH A 137 637 140 HOH HOH . F 5 HOH A 138 638 152 HOH HOH . F 5 HOH A 139 639 141 HOH HOH . G 5 HOH B 1 401 219 HOH HOH . G 5 HOH B 2 402 220 HOH HOH . G 5 HOH B 3 403 60 HOH HOH . G 5 HOH B 4 404 95 HOH HOH . G 5 HOH B 5 405 159 HOH HOH . G 5 HOH B 6 406 154 HOH HOH . G 5 HOH B 7 407 68 HOH HOH . G 5 HOH B 8 408 133 HOH HOH . G 5 HOH B 9 409 73 HOH HOH . G 5 HOH B 10 410 191 HOH HOH . G 5 HOH B 11 411 58 HOH HOH . G 5 HOH B 12 412 199 HOH HOH . G 5 HOH B 13 413 143 HOH HOH . G 5 HOH B 14 414 77 HOH HOH . G 5 HOH B 15 415 123 HOH HOH . G 5 HOH B 16 416 194 HOH HOH . G 5 HOH B 17 417 36 HOH HOH . G 5 HOH B 18 418 45 HOH HOH . G 5 HOH B 19 419 214 HOH HOH . G 5 HOH B 20 420 84 HOH HOH . G 5 HOH B 21 421 104 HOH HOH . G 5 HOH B 22 422 110 HOH HOH . G 5 HOH B 23 423 28 HOH HOH . G 5 HOH B 24 424 15 HOH HOH . G 5 HOH B 25 425 179 HOH HOH . G 5 HOH B 26 426 75 HOH HOH . G 5 HOH B 27 427 122 HOH HOH . G 5 HOH B 28 428 74 HOH HOH . G 5 HOH B 29 429 206 HOH HOH . G 5 HOH B 30 430 169 HOH HOH . G 5 HOH B 31 431 42 HOH HOH . G 5 HOH B 32 432 126 HOH HOH . G 5 HOH B 33 433 161 HOH HOH . G 5 HOH B 34 434 175 HOH HOH . G 5 HOH B 35 435 120 HOH HOH . G 5 HOH B 36 436 129 HOH HOH . G 5 HOH B 37 437 180 HOH HOH . G 5 HOH B 38 438 163 HOH HOH . G 5 HOH B 39 439 102 HOH HOH . G 5 HOH B 40 440 115 HOH HOH . G 5 HOH B 41 441 156 HOH HOH . G 5 HOH B 42 442 188 HOH HOH . G 5 HOH B 43 443 173 HOH HOH . G 5 HOH B 44 444 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . D 3 8.394 138.517 334.733 0.5 20 ? C1 IHP 402 A 1 HETATM 2 C C2 IHP . . . D 3 8.762 137.142 335.283 0.5 20 ? C2 IHP 402 A 1 HETATM 3 C C3 IHP . . . D 3 10.026 136.643 334.612 0.5 20 ? C3 IHP 402 A 1 HETATM 4 C C4 IHP . . . D 3 11.167 137.593 334.928 0.5 20 ? C4 IHP 402 A 1 HETATM 5 C C5 IHP . . . D 3 10.876 138.954 334.31 0.5 20 ? C5 IHP 402 A 1 HETATM 6 C C6 IHP . . . D 3 9.561 139.501 334.869 0.5 20 ? C6 IHP 402 A 1 HETATM 7 O O11 IHP . . . D 3 7.277 139.04 335.448 0.5 20 ? O11 IHP 402 A 1 HETATM 8 P P1 IHP . . . D 3 5.814 138.366 335.381 0.5 20 ? P1 IHP 402 A 1 HETATM 9 O O21 IHP . . . D 3 5.807 137.577 334.093 0.5 20 ? O21 IHP 402 A 1 HETATM 10 O O31 IHP . . . D 3 4.885 139.556 335.384 0.5 20 ? O31 IHP 402 A 1 HETATM 11 O O41 IHP . . . D 3 5.739 137.519 336.626 0.5 20 ? O41 IHP 402 A 1 HETATM 12 O O12 IHP . . . D 3 7.726 136.192 335.048 0.5 20 ? O12 IHP 402 A 1 HETATM 13 P P2 IHP . . . D 3 7.462 135 336.097 0.5 20 ? P2 IHP 402 A 1 HETATM 14 O O22 IHP . . . D 3 6.173 134.38 335.614 0.5 20 ? O22 IHP 402 A 1 HETATM 15 O O32 IHP . . . D 3 8.669 134.102 335.975 0.5 20 ? O32 IHP 402 A 1 HETATM 16 O O42 IHP . . . D 3 7.347 135.703 337.427 0.5 20 ? O42 IHP 402 A 1 HETATM 17 O O13 IHP . . . D 3 9.814 136.591 333.205 0.5 20 ? O13 IHP 402 A 1 HETATM 18 P P3 IHP . . . D 3 10.549 135.467 332.317 0.5 20 ? P3 IHP 402 A 1 HETATM 19 O O23 IHP . . . D 3 11.02 134.472 333.352 0.5 20 ? O23 IHP 402 A 1 HETATM 20 O O33 IHP . . . D 3 9.474 134.926 331.4 0.5 20 ? O33 IHP 402 A 1 HETATM 21 O O43 IHP . . . D 3 11.647 136.221 331.598 0.5 20 ? O43 IHP 402 A 1 HETATM 22 O O14 IHP . . . D 3 12.396 137.062 334.436 0.5 20 ? O14 IHP 402 A 1 HETATM 23 P P4 IHP . . . D 3 13.011 135.685 335 0.5 20 ? P4 IHP 402 A 1 HETATM 24 O O24 IHP . . . D 3 14.121 136.126 335.918 0.5 20 ? O24 IHP 402 A 1 HETATM 25 O O34 IHP . . . D 3 11.869 134.993 335.7 0.5 20 ? O34 IHP 402 A 1 HETATM 26 O O44 IHP . . . D 3 13.486 134.99 333.751 0.5 20 ? O44 IHP 402 A 1 HETATM 27 O O15 IHP . . . D 3 11.941 139.854 334.611 0.5 20 ? O15 IHP 402 A 1 HETATM 28 P P5 IHP . . . D 3 13.077 140.198 333.517 0.5 20 ? P5 IHP 402 A 1 HETATM 29 O O25 IHP . . . D 3 12.32 140.836 332.38 0.5 20 ? O25 IHP 402 A 1 HETATM 30 O O35 IHP . . . D 3 14.018 141.146 334.223 0.5 20 ? O35 IHP 402 A 1 HETATM 31 O O45 IHP . . . D 3 13.687 138.861 333.174 0.5 20 ? O45 IHP 402 A 1 HETATM 32 O O16 IHP . . . D 3 9.251 140.766 334.274 0.5 20 ? O16 IHP 402 A 1 HETATM 33 P P6 IHP . . . D 3 8.683 140.953 332.777 0.5 20 ? P6 IHP 402 A 1 HETATM 34 O O26 IHP . . . D 3 9.832 140.582 331.877 0.5 20 ? O26 IHP 402 A 1 HETATM 35 O O36 IHP . . . D 3 7.495 140.028 332.684 0.5 20 ? O36 IHP 402 A 1 HETATM 36 O O46 IHP . . . D 3 8.321 142.417 332.724 0.5 20 ? O46 IHP 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #