data_5MPM # _model_server_result.job_id CjbTByCh5uhXC0SGjcj0IA _model_server_result.datetime_utc '2024-12-01 14:48:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5MPM # _exptl.entry_id 5MPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.384 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.86 _cell.angle_gamma 90 _cell.entry_id 5MPM _cell.length_a 53.349 _cell.length_b 253.287 _cell.length_c 64.981 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 875 A CYS 875 1_555 A SG CYS 887 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OE1 GLN 56 A GLN 56 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 A OD1 ASP 351 A ASP 351 1_555 B MG MGF . A MGF 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD2 ASP 351 A ASP 351 1_555 B MG MGF . A MGF 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc4 A OD2 ASP 351 A ASP 351 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 A O THR 353 A THR 353 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 A OD1 ASP 702 A ASP 702 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc7 A O LEU 710 A LEU 710 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc8 A O LYS 711 A LYS 711 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc9 A O SER 713 A SER 713 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc10 A OE1 GLU 731 A GLU 731 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc11 A OE2 GLU 731 A GLU 731 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc12 B MG MGF . A MGF 1001 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C O2 CZA . A CZA 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc14 C O1 CZA . A CZA 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc15 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 E MG MG . A MG 1004 1_555 G O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc18 E MG MG . A MG 1004 1_555 G O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C20 H20 N2 O3' _chem_comp.formula_weight 336.384 _chem_comp.id CZA _chem_comp.mon_nstd_flag . _chem_comp.name "(6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C6 CZA doub 83 n n C6 C3 CZA sing 84 n n C6 C5 CZA sing 85 n n C3 C4 CZA doub 86 n n C3 C2 CZA sing 87 n n C2 C1 CZA sing 88 n n C2 O1 CZA doub 89 n n C1 H11 CZA sing 90 n n C1 H12 CZA sing 91 n n C1 H13 CZA sing 92 n n C5 N1 CZA sing 93 n n C5 C7 CZA sing 94 n n C5 H5 CZA sing 95 n n C7 C8 CZA sing 96 n n C7 C15 CZA sing 97 n n C7 H7 CZA sing 98 n n C15 C14 CZA sing 99 n y C15 C16 CZA doub 100 n y C16 N2 CZA sing 101 n y C16 H161 CZA sing 102 n n N2 C17 CZA sing 103 n y N2 HN2 CZA sing 104 n n C17 C14 CZA sing 105 n y C17 C18 CZA doub 106 n y C14 C13 CZA doub 107 n y C18 C19 CZA sing 108 n y C18 H18 CZA sing 109 n n C19 C20 CZA doub 110 n y C19 H19 CZA sing 111 n n C20 C13 CZA sing 112 n y C20 H20 CZA sing 113 n n C13 C12 CZA sing 114 n n C12 C8 CZA sing 115 n n C12 H121 CZA sing 116 n n C12 H122 CZA sing 117 n n C8 C9 CZA sing 118 n n C8 H8 CZA sing 119 n n C9 C10 CZA sing 120 n n C9 C11 CZA sing 121 n n C9 N1 CZA sing 122 n n C10 H101 CZA sing 123 n n C10 H102 CZA sing 124 n n C10 H103 CZA sing 125 n n C11 H111 CZA sing 126 n n C11 H112 CZA sing 127 n n C11 H113 CZA sing 128 n n N1 C4 CZA sing 129 n n C4 O3 CZA sing 130 n n O3 HO3 CZA sing 131 n n # _atom_sites.entry_id 5MPM _atom_sites.fract_transf_matrix[1][1] 0.018744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGF A 1 1001 1001 MGF MGF . C 3 CZA A 1 1002 1002 CZA CZA . D 4 MG A 1 1003 1003 MG MG . E 4 MG A 1 1004 1004 MG MG . F 5 K A 1 1005 1010 K K . G 6 HOH A 1 1101 1009 HOH HOH . G 6 HOH A 2 1102 1005 HOH HOH . G 6 HOH A 3 1103 1006 HOH HOH . G 6 HOH A 4 1104 1008 HOH HOH . G 6 HOH A 5 1105 1007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 CZA . . . C 3 -18.341 20.389 -49.4 1 145.7 ? O2 CZA 1002 A 1 HETATM 2 C C6 CZA . . . C 3 -18.267 19.197 -49.688 1 122.43 ? C6 CZA 1002 A 1 HETATM 3 C C3 CZA . . . C 3 -17.131 18.283 -49.567 1 122.41 ? C3 CZA 1002 A 1 HETATM 4 C C2 CZA . . . C 3 -15.787 18.74 -49.153 1 125.02 ? C2 CZA 1002 A 1 HETATM 5 O O1 CZA . . . C 3 -15.422 19.909 -49.277 1 128.72 ? O1 CZA 1002 A 1 HETATM 6 C C1 CZA . . . C 3 -14.907 17.804 -48.324 1 117.78 ? C1 CZA 1002 A 1 HETATM 7 C C5 CZA . . . C 3 -19.381 18.395 -50.325 1 110.06 ? C5 CZA 1002 A 1 HETATM 8 C C7 CZA . . . C 3 -20.656 18.131 -49.534 1 100.44 ? C7 CZA 1002 A 1 HETATM 9 C C15 CZA . . . C 3 -21.724 19.175 -49.464 1 99.47 ? C15 CZA 1002 A 1 HETATM 10 C C16 CZA . . . C 3 -21.915 20.271 -48.697 1 108.4 ? C16 CZA 1002 A 1 HETATM 11 N N2 CZA . . . C 3 -23.114 20.869 -49.08 1 111.87 ? N2 CZA 1002 A 1 HETATM 12 C C17 CZA . . . C 3 -23.733 20.169 -50.109 1 110.05 ? C17 CZA 1002 A 1 HETATM 13 C C14 CZA . . . C 3 -22.84 19.1 -50.337 1 97.75 ? C14 CZA 1002 A 1 HETATM 14 C C18 CZA . . . C 3 -24.909 20.286 -50.869 1 110.03 ? C18 CZA 1002 A 1 HETATM 15 C C19 CZA . . . C 3 -25.175 19.319 -51.863 1 94.29 ? C19 CZA 1002 A 1 HETATM 16 C C20 CZA . . . C 3 -24.275 18.254 -52.084 1 91.91 ? C20 CZA 1002 A 1 HETATM 17 C C13 CZA . . . C 3 -23.099 18.147 -51.317 1 97.05 ? C13 CZA 1002 A 1 HETATM 18 C C12 CZA . . . C 3 -22.097 17.021 -51.499 1 103.35 ? C12 CZA 1002 A 1 HETATM 19 C C8 CZA . . . C 3 -21.141 16.819 -50.254 1 102.99 ? C8 CZA 1002 A 1 HETATM 20 C C9 CZA . . . C 3 -19.836 15.998 -50.482 1 100.1 ? C9 CZA 1002 A 1 HETATM 21 C C10 CZA . . . C 3 -19.739 14.827 -49.482 1 94.86 ? C10 CZA 1002 A 1 HETATM 22 C C11 CZA . . . C 3 -19.692 15.445 -51.89 1 99.32 ? C11 CZA 1002 A 1 HETATM 23 N N1 CZA . . . C 3 -18.834 17.053 -50.298 1 111.95 ? N1 CZA 1002 A 1 HETATM 24 C C4 CZA . . . C 3 -17.53 17.043 -49.942 1 114.03 ? C4 CZA 1002 A 1 HETATM 25 O O3 CZA . . . C 3 -16.753 15.912 -49.973 1 92.3 ? O3 CZA 1002 A 1 # _model_server_stats.io_time_ms 141 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #