data_5MPM # _model_server_result.job_id 8_oK-89EHSVijYLbzh0f2w _model_server_result.datetime_utc '2024-12-01 15:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 5MPM # _exptl.entry_id 5MPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.86 _cell.angle_gamma 90 _cell.entry_id 5MPM _cell.length_a 53.349 _cell.length_b 253.287 _cell.length_c 64.981 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 875 A CYS 875 1_555 A SG CYS 887 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OE1 GLN 56 A GLN 56 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 A OD1 ASP 351 A ASP 351 1_555 B MG MGF . A MGF 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD2 ASP 351 A ASP 351 1_555 B MG MGF . A MGF 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc4 A OD2 ASP 351 A ASP 351 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 A O THR 353 A THR 353 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 A OD1 ASP 702 A ASP 702 1_555 E MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc7 A O LEU 710 A LEU 710 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc8 A O LYS 711 A LYS 711 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc9 A O SER 713 A SER 713 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc10 A OE1 GLU 731 A GLU 731 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc11 A OE2 GLU 731 A GLU 731 1_555 F K K . A K 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc12 B MG MGF . A MGF 1001 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C O2 CZA . A CZA 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc14 C O1 CZA . A CZA 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc15 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 D MG MG . A MG 1003 1_555 G O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 E MG MG . A MG 1004 1_555 G O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc18 E MG MG . A MG 1004 1_555 G O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MPM _atom_sites.fract_transf_matrix[1][1] 0.018744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGF A 1 1001 1001 MGF MGF . C 3 CZA A 1 1002 1002 CZA CZA . D 4 MG A 1 1003 1003 MG MG . E 4 MG A 1 1004 1004 MG MG . F 5 K A 1 1005 1010 K K . G 6 HOH A 1 1101 1009 HOH HOH . G 6 HOH A 2 1102 1005 HOH HOH . G 6 HOH A 3 1103 1006 HOH HOH . G 6 HOH A 4 1104 1008 HOH HOH . G 6 HOH A 5 1105 1007 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -12.647 _atom_site.Cartn_y 56.411 _atom_site.Cartn_z -61.025 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 112.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #