data_5MPR # _model_server_result.job_id Y_kToI0ytnihJtx8pS5gDA _model_server_result.datetime_utc '2024-11-05 07:53:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5MPR # _exptl.entry_id 5MPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MPR _cell.length_a 84.032 _cell.length_b 84.032 _cell.length_c 105.446 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_677 x-y+1,-y+2,-z+7/3 1 0 0 0 -1 0 0 0 -1 0 145.547693 246.040667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 203 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.287 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5MPR _atom_sites.fract_transf_matrix[1][1] 0.0119 _atom_sites.fract_transf_matrix[1][2] 0.006871 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 1 PLP PLP . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 4 HOH A 1 501 211 HOH HOH . H 4 HOH A 2 502 190 HOH HOH . H 4 HOH A 3 503 194 HOH HOH . H 4 HOH A 4 504 207 HOH HOH . H 4 HOH A 5 505 174 HOH HOH . H 4 HOH A 6 506 184 HOH HOH . H 4 HOH A 7 507 106 HOH HOH . H 4 HOH A 8 508 151 HOH HOH . H 4 HOH A 9 509 113 HOH HOH . H 4 HOH A 10 510 118 HOH HOH . H 4 HOH A 11 511 25 HOH HOH . H 4 HOH A 12 512 62 HOH HOH . H 4 HOH A 13 513 27 HOH HOH . H 4 HOH A 14 514 230 HOH HOH . H 4 HOH A 15 515 59 HOH HOH . H 4 HOH A 16 516 108 HOH HOH . H 4 HOH A 17 517 214 HOH HOH . H 4 HOH A 18 518 159 HOH HOH . H 4 HOH A 19 519 89 HOH HOH . H 4 HOH A 20 520 139 HOH HOH . H 4 HOH A 21 521 32 HOH HOH . H 4 HOH A 22 522 41 HOH HOH . H 4 HOH A 23 523 39 HOH HOH . H 4 HOH A 24 524 148 HOH HOH . H 4 HOH A 25 525 107 HOH HOH . H 4 HOH A 26 526 103 HOH HOH . H 4 HOH A 27 527 64 HOH HOH . H 4 HOH A 28 528 154 HOH HOH . H 4 HOH A 29 529 76 HOH HOH . H 4 HOH A 30 530 110 HOH HOH . H 4 HOH A 31 531 157 HOH HOH . H 4 HOH A 32 532 96 HOH HOH . H 4 HOH A 33 533 170 HOH HOH . H 4 HOH A 34 534 192 HOH HOH . H 4 HOH A 35 535 168 HOH HOH . H 4 HOH A 36 536 15 HOH HOH . H 4 HOH A 37 537 90 HOH HOH . H 4 HOH A 38 538 177 HOH HOH . H 4 HOH A 39 539 102 HOH HOH . H 4 HOH A 40 540 136 HOH HOH . H 4 HOH A 41 541 3 HOH HOH . H 4 HOH A 42 542 19 HOH HOH . H 4 HOH A 43 543 30 HOH HOH . H 4 HOH A 44 544 78 HOH HOH . H 4 HOH A 45 545 87 HOH HOH . H 4 HOH A 46 546 29 HOH HOH . H 4 HOH A 47 547 17 HOH HOH . H 4 HOH A 48 548 12 HOH HOH . H 4 HOH A 49 549 13 HOH HOH . H 4 HOH A 50 550 217 HOH HOH . H 4 HOH A 51 551 97 HOH HOH . H 4 HOH A 52 552 10 HOH HOH . H 4 HOH A 53 553 77 HOH HOH . H 4 HOH A 54 554 126 HOH HOH . H 4 HOH A 55 555 4 HOH HOH . H 4 HOH A 56 556 24 HOH HOH . H 4 HOH A 57 557 49 HOH HOH . H 4 HOH A 58 558 37 HOH HOH . H 4 HOH A 59 559 142 HOH HOH . H 4 HOH A 60 560 2 HOH HOH . H 4 HOH A 61 561 219 HOH HOH . H 4 HOH A 62 562 165 HOH HOH . H 4 HOH A 63 563 60 HOH HOH . H 4 HOH A 64 564 152 HOH HOH . H 4 HOH A 65 565 79 HOH HOH . H 4 HOH A 66 566 20 HOH HOH . H 4 HOH A 67 567 226 HOH HOH . H 4 HOH A 68 568 33 HOH HOH . H 4 HOH A 69 569 31 HOH HOH . H 4 HOH A 70 570 23 HOH HOH . H 4 HOH A 71 571 74 HOH HOH . H 4 HOH A 72 572 104 HOH HOH . H 4 HOH A 73 573 71 HOH HOH . H 4 HOH A 74 574 51 HOH HOH . H 4 HOH A 75 575 75 HOH HOH . H 4 HOH A 76 576 223 HOH HOH . H 4 HOH A 77 577 5 HOH HOH . H 4 HOH A 78 578 123 HOH HOH . H 4 HOH A 79 579 163 HOH HOH . H 4 HOH A 80 580 36 HOH HOH . H 4 HOH A 81 581 18 HOH HOH . H 4 HOH A 82 582 11 HOH HOH . H 4 HOH A 83 583 88 HOH HOH . H 4 HOH A 84 584 171 HOH HOH . H 4 HOH A 85 585 84 HOH HOH . H 4 HOH A 86 586 200 HOH HOH . H 4 HOH A 87 587 56 HOH HOH . H 4 HOH A 88 588 38 HOH HOH . H 4 HOH A 89 589 58 HOH HOH . H 4 HOH A 90 590 121 HOH HOH . H 4 HOH A 91 591 35 HOH HOH . H 4 HOH A 92 592 85 HOH HOH . H 4 HOH A 93 593 16 HOH HOH . H 4 HOH A 94 594 229 HOH HOH . H 4 HOH A 95 595 120 HOH HOH . H 4 HOH A 96 596 1 HOH HOH . H 4 HOH A 97 597 164 HOH HOH . H 4 HOH A 98 598 14 HOH HOH . H 4 HOH A 99 599 133 HOH HOH . H 4 HOH A 100 600 26 HOH HOH . H 4 HOH A 101 601 28 HOH HOH . H 4 HOH A 102 602 130 HOH HOH . H 4 HOH A 103 603 191 HOH HOH . H 4 HOH A 104 604 225 HOH HOH . H 4 HOH A 105 605 158 HOH HOH . H 4 HOH A 106 606 72 HOH HOH . H 4 HOH A 107 607 8 HOH HOH . H 4 HOH A 108 608 169 HOH HOH . H 4 HOH A 109 609 111 HOH HOH . H 4 HOH A 110 610 209 HOH HOH . H 4 HOH A 111 611 115 HOH HOH . H 4 HOH A 112 612 47 HOH HOH . H 4 HOH A 113 613 119 HOH HOH . H 4 HOH A 114 614 61 HOH HOH . H 4 HOH A 115 615 221 HOH HOH . H 4 HOH A 116 616 162 HOH HOH . H 4 HOH A 117 617 156 HOH HOH . H 4 HOH A 118 618 80 HOH HOH . H 4 HOH A 119 619 124 HOH HOH . H 4 HOH A 120 620 150 HOH HOH . H 4 HOH A 121 621 55 HOH HOH . H 4 HOH A 122 622 43 HOH HOH . H 4 HOH A 123 623 70 HOH HOH . H 4 HOH A 124 624 69 HOH HOH . H 4 HOH A 125 625 6 HOH HOH . H 4 HOH A 126 626 195 HOH HOH . H 4 HOH A 127 627 132 HOH HOH . H 4 HOH A 128 628 42 HOH HOH . H 4 HOH A 129 629 155 HOH HOH . H 4 HOH A 130 630 232 HOH HOH . H 4 HOH A 131 631 46 HOH HOH . H 4 HOH A 132 632 52 HOH HOH . H 4 HOH A 133 633 141 HOH HOH . H 4 HOH A 134 634 128 HOH HOH . H 4 HOH A 135 635 67 HOH HOH . H 4 HOH A 136 636 44 HOH HOH . H 4 HOH A 137 637 48 HOH HOH . H 4 HOH A 138 638 175 HOH HOH . H 4 HOH A 139 639 53 HOH HOH . H 4 HOH A 140 640 143 HOH HOH . H 4 HOH A 141 641 50 HOH HOH . H 4 HOH A 142 642 186 HOH HOH . H 4 HOH A 143 643 127 HOH HOH . H 4 HOH A 144 644 114 HOH HOH . H 4 HOH A 145 645 125 HOH HOH . H 4 HOH A 146 646 234 HOH HOH . H 4 HOH A 147 647 9 HOH HOH . H 4 HOH A 148 648 34 HOH HOH . H 4 HOH A 149 649 134 HOH HOH . H 4 HOH A 150 650 45 HOH HOH . H 4 HOH A 151 651 65 HOH HOH . H 4 HOH A 152 652 135 HOH HOH . H 4 HOH A 153 653 167 HOH HOH . H 4 HOH A 154 654 86 HOH HOH . H 4 HOH A 155 655 182 HOH HOH . H 4 HOH A 156 656 220 HOH HOH . H 4 HOH A 157 657 54 HOH HOH . H 4 HOH A 158 658 235 HOH HOH . H 4 HOH A 159 659 153 HOH HOH . H 4 HOH A 160 660 178 HOH HOH . H 4 HOH A 161 661 7 HOH HOH . H 4 HOH A 162 662 222 HOH HOH . H 4 HOH A 163 663 73 HOH HOH . H 4 HOH A 164 664 203 HOH HOH . H 4 HOH A 165 665 101 HOH HOH . H 4 HOH A 166 666 82 HOH HOH . H 4 HOH A 167 667 66 HOH HOH . H 4 HOH A 168 668 233 HOH HOH . H 4 HOH A 169 669 210 HOH HOH . H 4 HOH A 170 670 40 HOH HOH . H 4 HOH A 171 671 147 HOH HOH . H 4 HOH A 172 672 144 HOH HOH . H 4 HOH A 173 673 140 HOH HOH . H 4 HOH A 174 674 205 HOH HOH . H 4 HOH A 175 675 22 HOH HOH . H 4 HOH A 176 676 129 HOH HOH . H 4 HOH A 177 677 187 HOH HOH . H 4 HOH A 178 678 202 HOH HOH . H 4 HOH A 179 679 218 HOH HOH . H 4 HOH A 180 680 212 HOH HOH . H 4 HOH A 181 681 215 HOH HOH . H 4 HOH A 182 682 98 HOH HOH . H 4 HOH A 183 683 224 HOH HOH . H 4 HOH A 184 684 179 HOH HOH . H 4 HOH A 185 685 180 HOH HOH . H 4 HOH A 186 686 161 HOH HOH . H 4 HOH A 187 687 204 HOH HOH . H 4 HOH A 188 688 57 HOH HOH . H 4 HOH A 189 689 173 HOH HOH . H 4 HOH A 190 690 105 HOH HOH . H 4 HOH A 191 691 228 HOH HOH . H 4 HOH A 192 692 21 HOH HOH . H 4 HOH A 193 693 176 HOH HOH . H 4 HOH A 194 694 193 HOH HOH . H 4 HOH A 195 695 122 HOH HOH . H 4 HOH A 196 696 68 HOH HOH . H 4 HOH A 197 697 92 HOH HOH . H 4 HOH A 198 698 160 HOH HOH . H 4 HOH A 199 699 146 HOH HOH . H 4 HOH A 200 700 236 HOH HOH . H 4 HOH A 201 701 95 HOH HOH . H 4 HOH A 202 702 145 HOH HOH . H 4 HOH A 203 703 131 HOH HOH . H 4 HOH A 204 704 83 HOH HOH . H 4 HOH A 205 705 93 HOH HOH . H 4 HOH A 206 706 109 HOH HOH . H 4 HOH A 207 707 199 HOH HOH . H 4 HOH A 208 708 227 HOH HOH . H 4 HOH A 209 709 137 HOH HOH . H 4 HOH A 210 710 189 HOH HOH . H 4 HOH A 211 711 213 HOH HOH . H 4 HOH A 212 712 138 HOH HOH . H 4 HOH A 213 713 94 HOH HOH . H 4 HOH A 214 714 216 HOH HOH . H 4 HOH A 215 715 166 HOH HOH . H 4 HOH A 216 716 231 HOH HOH . H 4 HOH A 217 717 81 HOH HOH . H 4 HOH A 218 718 196 HOH HOH . H 4 HOH A 219 719 149 HOH HOH . H 4 HOH A 220 720 206 HOH HOH . H 4 HOH A 221 721 183 HOH HOH . H 4 HOH A 222 722 185 HOH HOH . H 4 HOH A 223 723 100 HOH HOH . H 4 HOH A 224 724 99 HOH HOH . H 4 HOH A 225 725 112 HOH HOH . H 4 HOH A 226 726 208 HOH HOH . H 4 HOH A 227 727 91 HOH HOH . H 4 HOH A 228 728 116 HOH HOH . H 4 HOH A 229 729 181 HOH HOH . H 4 HOH A 230 730 198 HOH HOH . H 4 HOH A 231 731 197 HOH HOH . H 4 HOH A 232 732 172 HOH HOH . H 4 HOH A 233 733 117 HOH HOH . H 4 HOH A 234 734 63 HOH HOH . H 4 HOH A 235 735 188 HOH HOH . H 4 HOH A 236 736 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -1.229 58.663 126.951 1 54.02 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 3 0.21 58.743 126.927 1 61.82 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 3 -1.839 59.785 126.102 1 44.4 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 3 -2.5 59.281 124.939 1 49.23 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #