data_5MPT # _model_server_result.job_id CIYiIWkmRW_yjIM6nfEV_g _model_server_result.datetime_utc '2024-10-19 17:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2203}' # _entry.id 5MPT # _exptl.entry_id 5MPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MPT _cell.length_a 98.37 _cell.length_b 98.37 _cell.length_c 133.43 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5MPT _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 2201 3002 SAH SAH . C 3 EDO A 1 2202 1 EDO EDO . D 3 EDO A 1 2203 8 EDO EDO . E 4 HOH A 1 2301 103 HOH HOH . E 4 HOH A 2 2302 236 HOH HOH . E 4 HOH A 3 2303 101 HOH HOH . E 4 HOH A 4 2304 292 HOH HOH . E 4 HOH A 5 2305 291 HOH HOH . E 4 HOH A 6 2306 267 HOH HOH . E 4 HOH A 7 2307 135 HOH HOH . E 4 HOH A 8 2308 177 HOH HOH . E 4 HOH A 9 2309 186 HOH HOH . E 4 HOH A 10 2310 217 HOH HOH . E 4 HOH A 11 2311 261 HOH HOH . E 4 HOH A 12 2312 124 HOH HOH . E 4 HOH A 13 2313 16 HOH HOH . E 4 HOH A 14 2314 234 HOH HOH . E 4 HOH A 15 2315 204 HOH HOH . E 4 HOH A 16 2316 171 HOH HOH . E 4 HOH A 17 2317 252 HOH HOH . E 4 HOH A 18 2318 63 HOH HOH . E 4 HOH A 19 2319 123 HOH HOH . E 4 HOH A 20 2320 175 HOH HOH . E 4 HOH A 21 2321 22 HOH HOH . E 4 HOH A 22 2322 159 HOH HOH . E 4 HOH A 23 2323 238 HOH HOH . E 4 HOH A 24 2324 157 HOH HOH . E 4 HOH A 25 2325 20 HOH HOH . E 4 HOH A 26 2326 6 HOH HOH . E 4 HOH A 27 2327 148 HOH HOH . E 4 HOH A 28 2328 10 HOH HOH . E 4 HOH A 29 2329 176 HOH HOH . E 4 HOH A 30 2330 15 HOH HOH . E 4 HOH A 31 2331 25 HOH HOH . E 4 HOH A 32 2332 126 HOH HOH . E 4 HOH A 33 2333 49 HOH HOH . E 4 HOH A 34 2334 32 HOH HOH . E 4 HOH A 35 2335 95 HOH HOH . E 4 HOH A 36 2336 168 HOH HOH . E 4 HOH A 37 2337 5 HOH HOH . E 4 HOH A 38 2338 264 HOH HOH . E 4 HOH A 39 2339 45 HOH HOH . E 4 HOH A 40 2340 78 HOH HOH . E 4 HOH A 41 2341 99 HOH HOH . E 4 HOH A 42 2342 85 HOH HOH . E 4 HOH A 43 2343 138 HOH HOH . E 4 HOH A 44 2344 178 HOH HOH . E 4 HOH A 45 2345 23 HOH HOH . E 4 HOH A 46 2346 110 HOH HOH . E 4 HOH A 47 2347 7 HOH HOH . E 4 HOH A 48 2348 34 HOH HOH . E 4 HOH A 49 2349 14 HOH HOH . E 4 HOH A 50 2350 263 HOH HOH . E 4 HOH A 51 2351 89 HOH HOH . E 4 HOH A 52 2352 220 HOH HOH . E 4 HOH A 53 2353 207 HOH HOH . E 4 HOH A 54 2354 107 HOH HOH . E 4 HOH A 55 2355 27 HOH HOH . E 4 HOH A 56 2356 43 HOH HOH . E 4 HOH A 57 2357 130 HOH HOH . E 4 HOH A 58 2358 213 HOH HOH . E 4 HOH A 59 2359 38 HOH HOH . E 4 HOH A 60 2360 152 HOH HOH . E 4 HOH A 61 2361 68 HOH HOH . E 4 HOH A 62 2362 30 HOH HOH . E 4 HOH A 63 2363 200 HOH HOH . E 4 HOH A 64 2364 219 HOH HOH . E 4 HOH A 65 2365 21 HOH HOH . E 4 HOH A 66 2366 115 HOH HOH . E 4 HOH A 67 2367 192 HOH HOH . E 4 HOH A 68 2368 167 HOH HOH . E 4 HOH A 69 2369 62 HOH HOH . E 4 HOH A 70 2370 55 HOH HOH . E 4 HOH A 71 2371 84 HOH HOH . E 4 HOH A 72 2372 69 HOH HOH . E 4 HOH A 73 2373 70 HOH HOH . E 4 HOH A 74 2374 54 HOH HOH . E 4 HOH A 75 2375 136 HOH HOH . E 4 HOH A 76 2376 239 HOH HOH . E 4 HOH A 77 2377 109 HOH HOH . E 4 HOH A 78 2378 160 HOH HOH . E 4 HOH A 79 2379 90 HOH HOH . E 4 HOH A 80 2380 86 HOH HOH . E 4 HOH A 81 2381 91 HOH HOH . E 4 HOH A 82 2382 2 HOH HOH . E 4 HOH A 83 2383 83 HOH HOH . E 4 HOH A 84 2384 18 HOH HOH . E 4 HOH A 85 2385 19 HOH HOH . E 4 HOH A 86 2386 104 HOH HOH . E 4 HOH A 87 2387 4 HOH HOH . E 4 HOH A 88 2388 31 HOH HOH . E 4 HOH A 89 2389 12 HOH HOH . E 4 HOH A 90 2390 33 HOH HOH . E 4 HOH A 91 2391 281 HOH HOH . E 4 HOH A 92 2392 190 HOH HOH . E 4 HOH A 93 2393 64 HOH HOH . E 4 HOH A 94 2394 134 HOH HOH . E 4 HOH A 95 2395 122 HOH HOH . E 4 HOH A 96 2396 121 HOH HOH . E 4 HOH A 97 2397 145 HOH HOH . E 4 HOH A 98 2398 114 HOH HOH . E 4 HOH A 99 2399 156 HOH HOH . E 4 HOH A 100 2400 11 HOH HOH . E 4 HOH A 101 2401 26 HOH HOH . E 4 HOH A 102 2402 198 HOH HOH . E 4 HOH A 103 2403 210 HOH HOH . E 4 HOH A 104 2404 79 HOH HOH . E 4 HOH A 105 2405 65 HOH HOH . E 4 HOH A 106 2406 92 HOH HOH . E 4 HOH A 107 2407 50 HOH HOH . E 4 HOH A 108 2408 41 HOH HOH . E 4 HOH A 109 2409 275 HOH HOH . E 4 HOH A 110 2410 66 HOH HOH . E 4 HOH A 111 2411 37 HOH HOH . E 4 HOH A 112 2412 100 HOH HOH . E 4 HOH A 113 2413 113 HOH HOH . E 4 HOH A 114 2414 199 HOH HOH . E 4 HOH A 115 2415 211 HOH HOH . E 4 HOH A 116 2416 39 HOH HOH . E 4 HOH A 117 2417 231 HOH HOH . E 4 HOH A 118 2418 9 HOH HOH . E 4 HOH A 119 2419 129 HOH HOH . E 4 HOH A 120 2420 150 HOH HOH . E 4 HOH A 121 2421 3 HOH HOH . E 4 HOH A 122 2422 94 HOH HOH . E 4 HOH A 123 2423 47 HOH HOH . E 4 HOH A 124 2424 285 HOH HOH . E 4 HOH A 125 2425 58 HOH HOH . E 4 HOH A 126 2426 1 HOH HOH . E 4 HOH A 127 2427 105 HOH HOH . E 4 HOH A 128 2428 53 HOH HOH . E 4 HOH A 129 2429 108 HOH HOH . E 4 HOH A 130 2430 158 HOH HOH . E 4 HOH A 131 2431 93 HOH HOH . E 4 HOH A 132 2432 228 HOH HOH . E 4 HOH A 133 2433 76 HOH HOH . E 4 HOH A 134 2434 74 HOH HOH . E 4 HOH A 135 2435 142 HOH HOH . E 4 HOH A 136 2436 28 HOH HOH . E 4 HOH A 137 2437 274 HOH HOH . E 4 HOH A 138 2438 72 HOH HOH . E 4 HOH A 139 2439 165 HOH HOH . E 4 HOH A 140 2440 56 HOH HOH . E 4 HOH A 141 2441 146 HOH HOH . E 4 HOH A 142 2442 46 HOH HOH . E 4 HOH A 143 2443 51 HOH HOH . E 4 HOH A 144 2444 29 HOH HOH . E 4 HOH A 145 2445 251 HOH HOH . E 4 HOH A 146 2446 174 HOH HOH . E 4 HOH A 147 2447 154 HOH HOH . E 4 HOH A 148 2448 166 HOH HOH . E 4 HOH A 149 2449 40 HOH HOH . E 4 HOH A 150 2450 44 HOH HOH . E 4 HOH A 151 2451 88 HOH HOH . E 4 HOH A 152 2452 276 HOH HOH . E 4 HOH A 153 2453 116 HOH HOH . E 4 HOH A 154 2454 241 HOH HOH . E 4 HOH A 155 2455 253 HOH HOH . E 4 HOH A 156 2456 222 HOH HOH . E 4 HOH A 157 2457 243 HOH HOH . E 4 HOH A 158 2458 268 HOH HOH . E 4 HOH A 159 2459 125 HOH HOH . E 4 HOH A 160 2460 17 HOH HOH . E 4 HOH A 161 2461 67 HOH HOH . E 4 HOH A 162 2462 173 HOH HOH . E 4 HOH A 163 2463 218 HOH HOH . E 4 HOH A 164 2464 225 HOH HOH . E 4 HOH A 165 2465 117 HOH HOH . E 4 HOH A 166 2466 161 HOH HOH . E 4 HOH A 167 2467 127 HOH HOH . E 4 HOH A 168 2468 182 HOH HOH . E 4 HOH A 169 2469 283 HOH HOH . E 4 HOH A 170 2470 8 HOH HOH . E 4 HOH A 171 2471 240 HOH HOH . E 4 HOH A 172 2472 250 HOH HOH . E 4 HOH A 173 2473 13 HOH HOH . E 4 HOH A 174 2474 205 HOH HOH . E 4 HOH A 175 2475 48 HOH HOH . E 4 HOH A 176 2476 57 HOH HOH . E 4 HOH A 177 2477 272 HOH HOH . E 4 HOH A 178 2478 169 HOH HOH . E 4 HOH A 179 2479 212 HOH HOH . E 4 HOH A 180 2480 143 HOH HOH . E 4 HOH A 181 2481 215 HOH HOH . E 4 HOH A 182 2482 35 HOH HOH . E 4 HOH A 183 2483 153 HOH HOH . E 4 HOH A 184 2484 60 HOH HOH . E 4 HOH A 185 2485 87 HOH HOH . E 4 HOH A 186 2486 201 HOH HOH . E 4 HOH A 187 2487 112 HOH HOH . E 4 HOH A 188 2488 80 HOH HOH . E 4 HOH A 189 2489 52 HOH HOH . E 4 HOH A 190 2490 244 HOH HOH . E 4 HOH A 191 2491 180 HOH HOH . E 4 HOH A 192 2492 183 HOH HOH . E 4 HOH A 193 2493 202 HOH HOH . E 4 HOH A 194 2494 209 HOH HOH . E 4 HOH A 195 2495 131 HOH HOH . E 4 HOH A 196 2496 184 HOH HOH . E 4 HOH A 197 2497 270 HOH HOH . E 4 HOH A 198 2498 77 HOH HOH . E 4 HOH A 199 2499 179 HOH HOH . E 4 HOH A 200 2500 96 HOH HOH . E 4 HOH A 201 2501 170 HOH HOH . E 4 HOH A 202 2502 282 HOH HOH . E 4 HOH A 203 2503 266 HOH HOH . E 4 HOH A 204 2504 185 HOH HOH . E 4 HOH A 205 2505 286 HOH HOH . E 4 HOH A 206 2506 287 HOH HOH . E 4 HOH A 207 2507 206 HOH HOH . E 4 HOH A 208 2508 75 HOH HOH . E 4 HOH A 209 2509 139 HOH HOH . E 4 HOH A 210 2510 196 HOH HOH . E 4 HOH A 211 2511 229 HOH HOH . E 4 HOH A 212 2512 36 HOH HOH . E 4 HOH A 213 2513 42 HOH HOH . E 4 HOH A 214 2514 284 HOH HOH . E 4 HOH A 215 2515 289 HOH HOH . E 4 HOH A 216 2516 214 HOH HOH . E 4 HOH A 217 2517 118 HOH HOH . E 4 HOH A 218 2518 82 HOH HOH . E 4 HOH A 219 2519 245 HOH HOH . E 4 HOH A 220 2520 223 HOH HOH . E 4 HOH A 221 2521 133 HOH HOH . E 4 HOH A 222 2522 269 HOH HOH . E 4 HOH A 223 2523 246 HOH HOH . E 4 HOH A 224 2524 278 HOH HOH . E 4 HOH A 225 2525 265 HOH HOH . E 4 HOH A 226 2526 248 HOH HOH . E 4 HOH A 227 2527 137 HOH HOH . E 4 HOH A 228 2528 132 HOH HOH . E 4 HOH A 229 2529 24 HOH HOH . E 4 HOH A 230 2530 216 HOH HOH . E 4 HOH A 231 2531 163 HOH HOH . E 4 HOH A 232 2532 119 HOH HOH . E 4 HOH A 233 2533 102 HOH HOH . E 4 HOH A 234 2534 189 HOH HOH . E 4 HOH A 235 2535 242 HOH HOH . E 4 HOH A 236 2536 227 HOH HOH . E 4 HOH A 237 2537 149 HOH HOH . E 4 HOH A 238 2538 73 HOH HOH . E 4 HOH A 239 2539 144 HOH HOH . E 4 HOH A 240 2540 232 HOH HOH . E 4 HOH A 241 2541 271 HOH HOH . E 4 HOH A 242 2542 61 HOH HOH . E 4 HOH A 243 2543 71 HOH HOH . E 4 HOH A 244 2544 140 HOH HOH . E 4 HOH A 245 2545 128 HOH HOH . E 4 HOH A 246 2546 277 HOH HOH . E 4 HOH A 247 2547 233 HOH HOH . E 4 HOH A 248 2548 111 HOH HOH . E 4 HOH A 249 2549 187 HOH HOH . E 4 HOH A 250 2550 259 HOH HOH . E 4 HOH A 251 2551 97 HOH HOH . E 4 HOH A 252 2552 106 HOH HOH . E 4 HOH A 253 2553 249 HOH HOH . E 4 HOH A 254 2554 164 HOH HOH . E 4 HOH A 255 2555 172 HOH HOH . E 4 HOH A 256 2556 279 HOH HOH . E 4 HOH A 257 2557 258 HOH HOH . E 4 HOH A 258 2558 197 HOH HOH . E 4 HOH A 259 2559 193 HOH HOH . E 4 HOH A 260 2560 147 HOH HOH . E 4 HOH A 261 2561 120 HOH HOH . E 4 HOH A 262 2562 235 HOH HOH . E 4 HOH A 263 2563 151 HOH HOH . E 4 HOH A 264 2564 203 HOH HOH . E 4 HOH A 265 2565 181 HOH HOH . E 4 HOH A 266 2566 191 HOH HOH . E 4 HOH A 267 2567 59 HOH HOH . E 4 HOH A 268 2568 155 HOH HOH . E 4 HOH A 269 2569 208 HOH HOH . E 4 HOH A 270 2570 141 HOH HOH . E 4 HOH A 271 2571 230 HOH HOH . E 4 HOH A 272 2572 195 HOH HOH . E 4 HOH A 273 2573 81 HOH HOH . E 4 HOH A 274 2574 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -13.231 24.045 22.804 1 58.95 ? C1 EDO 2203 A 1 HETATM 2 O O1 EDO . . . D 3 -12.289 23.835 23.859 1 53.42 ? O1 EDO 2203 A 1 HETATM 3 C C2 EDO . . . D 3 -13.324 25.546 22.575 1 67.89 ? C2 EDO 2203 A 1 HETATM 4 O O2 EDO . . . D 3 -13.358 26.186 23.856 1 75.11 ? O2 EDO 2203 A 1 HETATM 5 H H11 EDO . . . D 3 -14.207 23.645 23.084 1 70.74 ? H11 EDO 2203 A 1 HETATM 6 H H12 EDO . . . D 3 -12.895 23.545 21.893 1 70.74 ? H12 EDO 2203 A 1 HETATM 7 H HO1 EDO . . . D 3 -12.205 22.888 24.031 1 64.1 ? HO1 EDO 2203 A 1 HETATM 8 H H21 EDO . . . D 3 -14.229 25.784 22.013 1 81.46 ? H21 EDO 2203 A 1 HETATM 9 H H22 EDO . . . D 3 -12.459 25.893 22.006 1 81.46 ? H22 EDO 2203 A 1 HETATM 10 H HO2 EDO . . . D 3 -13.418 27.143 23.737 1 90.14 ? HO2 EDO 2203 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #