data_5MQ1 # _model_server_result.job_id LbhvA1KzMlRp3cZxUgyfcQ _model_server_result.datetime_utc '2025-01-10 17:51:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":711}' # _entry.id 5MQ1 # _exptl.entry_id 5MQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MQ1 _cell.length_a 66.87 _cell.length_b 125.255 _cell.length_c 37.353 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 174 1_555 D ZN ZN . A ZN 702 3_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A OE1 GLU 67 A GLU 194 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 A OE1 GLU 67 A GLU 194 1_555 C ZN ZN . A ZN 701 3_557 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 A OD2 ASP 71 A ASP 198 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc5 A OD2 ASP 71 A ASP 198 1_555 C ZN ZN . A ZN 701 3_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc6 A NE2 HIS 99 A HIS 226 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc7 A OE1 GLU 108 A GLU 235 1_555 H MG MG . A MG 706 4_577 ? A ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 A OE2 GLU 108 A GLU 235 1_555 H MG MG . A MG 706 4_577 ? C ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc9 H MG MG . A MG 706 1_555 T O HOH . A HOH 826 4_577 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc10 H MG MG . A MG 706 1_555 T O HOH . A HOH 909 4_577 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 134 n n C1 C2 EDO sing 135 n n C1 H11 EDO sing 136 n n C1 H12 EDO sing 137 n n O1 HO1 EDO sing 138 n n C2 O2 EDO sing 139 n n C2 H21 EDO sing 140 n n C2 H22 EDO sing 141 n n O2 HO2 EDO sing 142 n n # _atom_sites.entry_id 5MQ1 _atom_sites.fract_transf_matrix[1][1] 0.014954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5U6 A 1 700 700 5U6 DRG . C 3 ZN A 1 701 701 ZN ZN . D 3 ZN A 1 702 702 ZN ZN . E 4 CL A 1 703 703 CL CL . F 4 CL A 1 704 704 CL CL . G 4 CL A 1 705 705 CL CL . H 5 MG A 1 706 706 MG MG . I 6 EDO A 1 707 707 EDO EDO . J 6 EDO A 1 708 708 EDO EDO . K 6 EDO A 1 709 709 EDO EDO . L 6 EDO A 1 710 710 EDO EDO . M 6 EDO A 1 711 711 EDO EDO . N 6 EDO A 1 712 712 EDO EDO . O 6 EDO A 1 713 713 EDO EDO . P 6 EDO A 1 714 714 EDO EDO . Q 6 EDO A 1 715 715 EDO EDO . R 6 EDO A 1 716 716 EDO EDO . S 6 EDO A 1 717 717 EDO EDO . T 7 HOH A 1 801 196 HOH HOH . T 7 HOH A 2 802 88 HOH HOH . T 7 HOH A 3 803 221 HOH HOH . T 7 HOH A 4 804 136 HOH HOH . T 7 HOH A 5 805 199 HOH HOH . T 7 HOH A 6 806 182 HOH HOH . T 7 HOH A 7 807 82 HOH HOH . T 7 HOH A 8 808 181 HOH HOH . T 7 HOH A 9 809 166 HOH HOH . T 7 HOH A 10 810 137 HOH HOH . T 7 HOH A 11 811 135 HOH HOH . T 7 HOH A 12 812 210 HOH HOH . T 7 HOH A 13 813 24 HOH HOH . T 7 HOH A 14 814 236 HOH HOH . T 7 HOH A 15 815 94 HOH HOH . T 7 HOH A 16 816 214 HOH HOH . T 7 HOH A 17 817 235 HOH HOH . T 7 HOH A 18 818 11 HOH HOH . T 7 HOH A 19 819 174 HOH HOH . T 7 HOH A 20 820 227 HOH HOH . T 7 HOH A 21 821 218 HOH HOH . T 7 HOH A 22 822 197 HOH HOH . T 7 HOH A 23 823 118 HOH HOH . T 7 HOH A 24 824 77 HOH HOH . T 7 HOH A 25 825 1 HOH HOH . T 7 HOH A 26 826 125 HOH HOH . T 7 HOH A 27 827 190 HOH HOH . T 7 HOH A 28 828 75 HOH HOH . T 7 HOH A 29 829 87 HOH HOH . T 7 HOH A 30 830 76 HOH HOH . T 7 HOH A 31 831 211 HOH HOH . T 7 HOH A 32 832 19 HOH HOH . T 7 HOH A 33 833 158 HOH HOH . T 7 HOH A 34 834 6 HOH HOH . T 7 HOH A 35 835 232 HOH HOH . T 7 HOH A 36 836 18 HOH HOH . T 7 HOH A 37 837 7 HOH HOH . T 7 HOH A 38 838 93 HOH HOH . T 7 HOH A 39 839 31 HOH HOH . T 7 HOH A 40 840 242 HOH HOH . T 7 HOH A 41 841 79 HOH HOH . T 7 HOH A 42 842 69 HOH HOH . T 7 HOH A 43 843 159 HOH HOH . T 7 HOH A 44 844 222 HOH HOH . T 7 HOH A 45 845 161 HOH HOH . T 7 HOH A 46 846 51 HOH HOH . T 7 HOH A 47 847 5 HOH HOH . T 7 HOH A 48 848 114 HOH HOH . T 7 HOH A 49 849 86 HOH HOH . T 7 HOH A 50 850 177 HOH HOH . T 7 HOH A 51 851 20 HOH HOH . T 7 HOH A 52 852 22 HOH HOH . T 7 HOH A 53 853 170 HOH HOH . T 7 HOH A 54 854 74 HOH HOH . T 7 HOH A 55 855 30 HOH HOH . T 7 HOH A 56 856 188 HOH HOH . T 7 HOH A 57 857 173 HOH HOH . T 7 HOH A 58 858 71 HOH HOH . T 7 HOH A 59 859 246 HOH HOH . T 7 HOH A 60 860 97 HOH HOH . T 7 HOH A 61 861 160 HOH HOH . T 7 HOH A 62 862 50 HOH HOH . T 7 HOH A 63 863 85 HOH HOH . T 7 HOH A 64 864 165 HOH HOH . T 7 HOH A 65 865 153 HOH HOH . T 7 HOH A 66 866 17 HOH HOH . T 7 HOH A 67 867 16 HOH HOH . T 7 HOH A 68 868 60 HOH HOH . T 7 HOH A 69 869 263 HOH HOH . T 7 HOH A 70 870 98 HOH HOH . T 7 HOH A 71 871 10 HOH HOH . T 7 HOH A 72 872 89 HOH HOH . T 7 HOH A 73 873 228 HOH HOH . T 7 HOH A 74 874 4 HOH HOH . T 7 HOH A 75 875 107 HOH HOH . T 7 HOH A 76 876 179 HOH HOH . T 7 HOH A 77 877 14 HOH HOH . T 7 HOH A 78 878 91 HOH HOH . T 7 HOH A 79 879 48 HOH HOH . T 7 HOH A 80 880 47 HOH HOH . T 7 HOH A 81 881 55 HOH HOH . T 7 HOH A 82 882 175 HOH HOH . T 7 HOH A 83 883 40 HOH HOH . T 7 HOH A 84 884 28 HOH HOH . T 7 HOH A 85 885 202 HOH HOH . T 7 HOH A 86 886 12 HOH HOH . T 7 HOH A 87 887 3 HOH HOH . T 7 HOH A 88 888 35 HOH HOH . T 7 HOH A 89 889 26 HOH HOH . T 7 HOH A 90 890 57 HOH HOH . T 7 HOH A 91 891 192 HOH HOH . T 7 HOH A 92 892 38 HOH HOH . T 7 HOH A 93 893 34 HOH HOH . T 7 HOH A 94 894 193 HOH HOH . T 7 HOH A 95 895 215 HOH HOH . T 7 HOH A 96 896 207 HOH HOH . T 7 HOH A 97 897 27 HOH HOH . T 7 HOH A 98 898 45 HOH HOH . T 7 HOH A 99 899 154 HOH HOH . T 7 HOH A 100 900 13 HOH HOH . T 7 HOH A 101 901 46 HOH HOH . T 7 HOH A 102 902 108 HOH HOH . T 7 HOH A 103 903 80 HOH HOH . T 7 HOH A 104 904 65 HOH HOH . T 7 HOH A 105 905 29 HOH HOH . T 7 HOH A 106 906 62 HOH HOH . T 7 HOH A 107 907 49 HOH HOH . T 7 HOH A 108 908 41 HOH HOH . T 7 HOH A 109 909 123 HOH HOH . T 7 HOH A 110 910 168 HOH HOH . T 7 HOH A 111 911 189 HOH HOH . T 7 HOH A 112 912 169 HOH HOH . T 7 HOH A 113 913 185 HOH HOH . T 7 HOH A 114 914 162 HOH HOH . T 7 HOH A 115 915 249 HOH HOH . T 7 HOH A 116 916 129 HOH HOH . T 7 HOH A 117 917 109 HOH HOH . T 7 HOH A 118 918 223 HOH HOH . T 7 HOH A 119 919 67 HOH HOH . T 7 HOH A 120 920 212 HOH HOH . T 7 HOH A 121 921 84 HOH HOH . T 7 HOH A 122 922 112 HOH HOH . T 7 HOH A 123 923 15 HOH HOH . T 7 HOH A 124 924 68 HOH HOH . T 7 HOH A 125 925 53 HOH HOH . T 7 HOH A 126 926 183 HOH HOH . T 7 HOH A 127 927 132 HOH HOH . T 7 HOH A 128 928 25 HOH HOH . T 7 HOH A 129 929 157 HOH HOH . T 7 HOH A 130 930 56 HOH HOH . T 7 HOH A 131 931 99 HOH HOH . T 7 HOH A 132 932 138 HOH HOH . T 7 HOH A 133 933 204 HOH HOH . T 7 HOH A 134 934 44 HOH HOH . T 7 HOH A 135 935 127 HOH HOH . T 7 HOH A 136 936 234 HOH HOH . T 7 HOH A 137 937 78 HOH HOH . T 7 HOH A 138 938 141 HOH HOH . T 7 HOH A 139 939 42 HOH HOH . T 7 HOH A 140 940 113 HOH HOH . T 7 HOH A 141 941 250 HOH HOH . T 7 HOH A 142 942 33 HOH HOH . T 7 HOH A 143 943 115 HOH HOH . T 7 HOH A 144 944 36 HOH HOH . T 7 HOH A 145 945 39 HOH HOH . T 7 HOH A 146 946 2 HOH HOH . T 7 HOH A 147 947 262 HOH HOH . T 7 HOH A 148 948 21 HOH HOH . T 7 HOH A 149 949 64 HOH HOH . T 7 HOH A 150 950 164 HOH HOH . T 7 HOH A 151 951 54 HOH HOH . T 7 HOH A 152 952 258 HOH HOH . T 7 HOH A 153 953 105 HOH HOH . T 7 HOH A 154 954 100 HOH HOH . T 7 HOH A 155 955 230 HOH HOH . T 7 HOH A 156 956 205 HOH HOH . T 7 HOH A 157 957 37 HOH HOH . T 7 HOH A 158 958 163 HOH HOH . T 7 HOH A 159 959 149 HOH HOH . T 7 HOH A 160 960 140 HOH HOH . T 7 HOH A 161 961 264 HOH HOH . T 7 HOH A 162 962 95 HOH HOH . T 7 HOH A 163 963 176 HOH HOH . T 7 HOH A 164 964 198 HOH HOH . T 7 HOH A 165 965 187 HOH HOH . T 7 HOH A 166 966 178 HOH HOH . T 7 HOH A 167 967 119 HOH HOH . T 7 HOH A 168 968 213 HOH HOH . T 7 HOH A 169 969 241 HOH HOH . T 7 HOH A 170 970 145 HOH HOH . T 7 HOH A 171 971 233 HOH HOH . T 7 HOH A 172 972 90 HOH HOH . T 7 HOH A 173 973 152 HOH HOH . T 7 HOH A 174 974 131 HOH HOH . T 7 HOH A 175 975 151 HOH HOH . T 7 HOH A 176 976 133 HOH HOH . T 7 HOH A 177 977 239 HOH HOH . T 7 HOH A 178 978 208 HOH HOH . T 7 HOH A 179 979 203 HOH HOH . T 7 HOH A 180 980 148 HOH HOH . T 7 HOH A 181 981 172 HOH HOH . T 7 HOH A 182 982 142 HOH HOH . T 7 HOH A 183 983 243 HOH HOH . T 7 HOH A 184 984 72 HOH HOH . T 7 HOH A 185 985 144 HOH HOH . T 7 HOH A 186 986 253 HOH HOH . T 7 HOH A 187 987 130 HOH HOH . T 7 HOH A 188 988 209 HOH HOH . T 7 HOH A 189 989 63 HOH HOH . T 7 HOH A 190 990 200 HOH HOH . T 7 HOH A 191 991 58 HOH HOH . T 7 HOH A 192 992 252 HOH HOH . T 7 HOH A 193 993 117 HOH HOH . T 7 HOH A 194 994 238 HOH HOH . T 7 HOH A 195 995 217 HOH HOH . T 7 HOH A 196 996 184 HOH HOH . T 7 HOH A 197 997 101 HOH HOH . T 7 HOH A 198 998 225 HOH HOH . T 7 HOH A 199 999 226 HOH HOH . T 7 HOH A 200 1000 102 HOH HOH . T 7 HOH A 201 1001 231 HOH HOH . T 7 HOH A 202 1002 224 HOH HOH . T 7 HOH A 203 1003 147 HOH HOH . T 7 HOH A 204 1004 206 HOH HOH . T 7 HOH A 205 1005 245 HOH HOH . T 7 HOH A 206 1006 219 HOH HOH . T 7 HOH A 207 1007 70 HOH HOH . T 7 HOH A 208 1008 146 HOH HOH . T 7 HOH A 209 1009 61 HOH HOH . T 7 HOH A 210 1010 171 HOH HOH . T 7 HOH A 211 1011 122 HOH HOH . T 7 HOH A 212 1012 259 HOH HOH . T 7 HOH A 213 1013 23 HOH HOH . T 7 HOH A 214 1014 216 HOH HOH . T 7 HOH A 215 1015 201 HOH HOH . T 7 HOH A 216 1016 121 HOH HOH . T 7 HOH A 217 1017 156 HOH HOH . T 7 HOH A 218 1018 134 HOH HOH . T 7 HOH A 219 1019 128 HOH HOH . T 7 HOH A 220 1020 167 HOH HOH . T 7 HOH A 221 1021 116 HOH HOH . T 7 HOH A 222 1022 143 HOH HOH . T 7 HOH A 223 1023 73 HOH HOH . T 7 HOH A 224 1024 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 6 -0.237 142.27 37.141 1 30.47 ? C1 EDO 711 A 1 HETATM 2 O O1 EDO . . . M 6 -0.278 141.627 38.435 1 34.97 ? O1 EDO 711 A 1 HETATM 3 C C2 EDO . . . M 6 0.983 141.734 36.387 1 29.53 ? C2 EDO 711 A 1 HETATM 4 O O2 EDO . . . M 6 0.671 140.616 35.556 1 27.78 ? O2 EDO 711 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #