data_5MQ8 # _model_server_result.job_id CQSZEgijAYWx0Wnw0HybMw _model_server_result.datetime_utc '2025-03-06 09:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5MQ8 # _exptl.entry_id 5MQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MQ8 _cell.length_a 53.628 _cell.length_b 83.669 _cell.length_c 95.729 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5MQ8 _atom_sites.fract_transf_matrix[1][1] 0.018647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL D 1 201 1 GOL GOL . D 3 HOH A 1 201 61 HOH HOH . D 3 HOH A 2 202 103 HOH HOH . D 3 HOH A 3 203 36 HOH HOH . D 3 HOH A 4 204 90 HOH HOH . D 3 HOH A 5 205 32 HOH HOH . D 3 HOH A 6 206 33 HOH HOH . D 3 HOH A 7 207 30 HOH HOH . D 3 HOH A 8 208 83 HOH HOH . D 3 HOH A 9 209 64 HOH HOH . D 3 HOH A 10 210 16 HOH HOH . D 3 HOH A 11 211 9 HOH HOH . D 3 HOH A 12 212 23 HOH HOH . D 3 HOH A 13 213 113 HOH HOH . D 3 HOH A 14 214 20 HOH HOH . D 3 HOH A 15 215 3 HOH HOH . D 3 HOH A 16 216 62 HOH HOH . D 3 HOH A 17 217 87 HOH HOH . D 3 HOH A 18 218 64 HOH HOH . D 3 HOH A 19 219 25 HOH HOH . D 3 HOH A 20 220 7 HOH HOH . D 3 HOH A 21 221 86 HOH HOH . D 3 HOH A 22 222 116 HOH HOH . D 3 HOH A 23 223 18 HOH HOH . D 3 HOH A 24 224 111 HOH HOH . D 3 HOH A 25 225 77 HOH HOH . D 3 HOH A 26 226 79 HOH HOH . D 3 HOH A 27 227 24 HOH HOH . D 3 HOH A 28 228 13 HOH HOH . D 3 HOH A 29 229 6 HOH HOH . D 3 HOH A 30 230 91 HOH HOH . D 3 HOH A 31 231 15 HOH HOH . D 3 HOH A 32 232 37 HOH HOH . D 3 HOH A 33 233 45 HOH HOH . D 3 HOH A 34 234 83 HOH HOH . D 3 HOH A 35 235 20 HOH HOH . D 3 HOH A 36 236 28 HOH HOH . D 3 HOH A 37 237 81 HOH HOH . D 3 HOH A 38 238 3 HOH HOH . D 3 HOH A 39 239 2 HOH HOH . D 3 HOH A 40 240 76 HOH HOH . D 3 HOH A 41 241 29 HOH HOH . D 3 HOH A 42 242 108 HOH HOH . D 3 HOH A 43 243 74 HOH HOH . D 3 HOH A 44 244 65 HOH HOH . D 3 HOH A 45 245 26 HOH HOH . D 3 HOH A 46 246 16 HOH HOH . D 3 HOH A 47 247 17 HOH HOH . D 3 HOH A 48 248 63 HOH HOH . D 3 HOH A 49 249 80 HOH HOH . D 3 HOH A 50 250 72 HOH HOH . D 3 HOH A 51 251 84 HOH HOH . D 3 HOH A 52 252 44 HOH HOH . D 3 HOH A 53 253 32 HOH HOH . D 3 HOH A 54 254 57 HOH HOH . D 3 HOH A 55 255 42 HOH HOH . D 3 HOH A 56 256 21 HOH HOH . D 3 HOH A 57 257 76 HOH HOH . D 3 HOH A 58 258 27 HOH HOH . D 3 HOH A 59 259 38 HOH HOH . D 3 HOH A 60 260 65 HOH HOH . D 3 HOH A 61 261 82 HOH HOH . D 3 HOH A 62 262 6 HOH HOH . D 3 HOH A 63 263 61 HOH HOH . D 3 HOH A 64 264 60 HOH HOH . D 3 HOH A 65 265 56 HOH HOH . D 3 HOH A 66 266 27 HOH HOH . D 3 HOH A 67 267 68 HOH HOH . D 3 HOH A 68 268 67 HOH HOH . D 3 HOH A 69 269 8 HOH HOH . D 3 HOH A 70 270 40 HOH HOH . D 3 HOH A 71 271 10 HOH HOH . D 3 HOH A 72 272 54 HOH HOH . D 3 HOH A 73 273 100 HOH HOH . D 3 HOH A 74 274 43 HOH HOH . D 3 HOH A 75 275 14 HOH HOH . D 3 HOH A 76 276 77 HOH HOH . D 3 HOH A 77 277 8 HOH HOH . D 3 HOH A 78 278 115 HOH HOH . D 3 HOH A 79 279 55 HOH HOH . D 3 HOH A 80 280 84 HOH HOH . D 3 HOH A 81 281 26 HOH HOH . D 3 HOH A 82 282 110 HOH HOH . D 3 HOH A 83 283 41 HOH HOH . E 3 HOH D 1 301 102 HOH HOH . E 3 HOH D 2 302 92 HOH HOH . E 3 HOH D 3 303 11 HOH HOH . E 3 HOH D 4 304 24 HOH HOH . E 3 HOH D 5 305 22 HOH HOH . E 3 HOH D 6 306 72 HOH HOH . E 3 HOH D 7 307 43 HOH HOH . E 3 HOH D 8 308 50 HOH HOH . E 3 HOH D 9 309 45 HOH HOH . E 3 HOH D 10 310 69 HOH HOH . E 3 HOH D 11 311 68 HOH HOH . E 3 HOH D 12 312 36 HOH HOH . E 3 HOH D 13 313 55 HOH HOH . E 3 HOH D 14 314 51 HOH HOH . E 3 HOH D 15 315 17 HOH HOH . E 3 HOH D 16 316 53 HOH HOH . E 3 HOH D 17 317 12 HOH HOH . E 3 HOH D 18 318 39 HOH HOH . E 3 HOH D 19 319 104 HOH HOH . E 3 HOH D 20 320 59 HOH HOH . E 3 HOH D 21 321 42 HOH HOH . E 3 HOH D 22 322 14 HOH HOH . E 3 HOH D 23 323 39 HOH HOH . E 3 HOH D 24 324 12 HOH HOH . E 3 HOH D 25 325 69 HOH HOH . E 3 HOH D 26 326 50 HOH HOH . E 3 HOH D 27 327 93 HOH HOH . E 3 HOH D 28 328 2 HOH HOH . E 3 HOH D 29 329 35 HOH HOH . E 3 HOH D 30 330 41 HOH HOH . E 3 HOH D 31 331 105 HOH HOH . E 3 HOH D 32 332 7 HOH HOH . E 3 HOH D 33 333 33 HOH HOH . E 3 HOH D 34 334 34 HOH HOH . E 3 HOH D 35 335 94 HOH HOH . E 3 HOH D 36 336 44 HOH HOH . E 3 HOH D 37 337 15 HOH HOH . E 3 HOH D 38 338 79 HOH HOH . E 3 HOH D 39 339 101 HOH HOH . E 3 HOH D 40 340 97 HOH HOH . E 3 HOH D 41 341 109 HOH HOH . E 3 HOH D 42 342 114 HOH HOH . E 3 HOH D 43 343 31 HOH HOH . E 3 HOH D 44 344 66 HOH HOH . E 3 HOH D 45 345 54 HOH HOH . E 3 HOH D 46 346 5 HOH HOH . E 3 HOH D 47 347 10 HOH HOH . E 3 HOH D 48 348 35 HOH HOH . E 3 HOH D 49 349 70 HOH HOH . E 3 HOH D 50 350 81 HOH HOH . E 3 HOH D 51 351 31 HOH HOH . E 3 HOH D 52 352 22 HOH HOH . E 3 HOH D 53 353 47 HOH HOH . E 3 HOH D 54 354 51 HOH HOH . E 3 HOH D 55 355 48 HOH HOH . E 3 HOH D 56 356 46 HOH HOH . E 3 HOH D 57 357 28 HOH HOH . E 3 HOH D 58 358 19 HOH HOH . E 3 HOH D 59 359 112 HOH HOH . E 3 HOH D 60 360 37 HOH HOH . E 3 HOH D 61 361 52 HOH HOH . E 3 HOH D 62 362 49 HOH HOH . E 3 HOH D 63 363 56 HOH HOH . E 3 HOH D 64 364 75 HOH HOH . E 3 HOH D 65 365 57 HOH HOH . E 3 HOH D 66 366 75 HOH HOH . E 3 HOH D 67 367 9 HOH HOH . E 3 HOH D 68 368 117 HOH HOH . E 3 HOH D 69 369 98 HOH HOH . E 3 HOH D 70 370 62 HOH HOH . E 3 HOH D 71 371 82 HOH HOH . E 3 HOH D 72 372 74 HOH HOH . E 3 HOH D 73 373 89 HOH HOH . E 3 HOH D 74 374 70 HOH HOH . E 3 HOH D 75 375 71 HOH HOH . E 3 HOH D 76 376 99 HOH HOH . E 3 HOH D 77 377 38 HOH HOH . E 3 HOH D 78 378 23 HOH HOH . E 3 HOH D 79 379 73 HOH HOH . E 3 HOH D 80 380 73 HOH HOH . E 3 HOH D 81 381 30 HOH HOH . E 3 HOH D 82 382 63 HOH HOH . E 3 HOH D 83 383 21 HOH HOH . E 3 HOH D 84 384 49 HOH HOH . E 3 HOH D 85 385 58 HOH HOH . E 3 HOH D 86 386 34 HOH HOH . E 3 HOH D 87 387 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 3.385 -30.439 32.338 1 65.16 ? C1 GOL 201 D 1 HETATM 2 O O1 GOL . . . C 2 4.167 -30.417 31.149 1 64.52 ? O1 GOL 201 D 1 HETATM 3 C C2 GOL . . . C 2 4.262 -30.401 33.567 1 64.86 ? C2 GOL 201 D 1 HETATM 4 O O2 GOL . . . C 2 4.635 -29.045 33.828 1 64.87 ? O2 GOL 201 D 1 HETATM 5 C C3 GOL . . . C 2 3.541 -30.97 34.768 1 63.86 ? C3 GOL 201 D 1 HETATM 6 O O3 GOL . . . C 2 3.502 -32.39 34.706 1 63.47 ? O3 GOL 201 D 1 HETATM 7 H H11 GOL . . . C 2 2.709 -29.586 32.356 1 65.24 ? H11 GOL 201 D 1 HETATM 8 H H12 GOL . . . C 2 2.743 -31.319 32.345 1 65.28 ? H12 GOL 201 D 1 HETATM 9 H HO1 GOL . . . C 2 3.62 -30.866 30.453 1 64.39 ? HO1 GOL 201 D 1 HETATM 10 H H2 GOL . . . C 2 5.224 -30.884 33.4 1 64.91 ? H2 GOL 201 D 1 HETATM 11 H HO2 GOL . . . C 2 5.556 -29.041 34.199 1 64.91 ? HO2 GOL 201 D 1 HETATM 12 H H31 GOL . . . C 2 4.017 -30.645 35.693 1 63.76 ? H31 GOL 201 D 1 HETATM 13 H H32 GOL . . . C 2 2.525 -30.58 34.81 1 63.56 ? H32 GOL 201 D 1 HETATM 14 H HO3 GOL . . . C 2 2.611 -32.623 34.334 1 63.5 ? HO3 GOL 201 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #