data_5MQL # _model_server_result.job_id QR7BHLa6CewkCRGBcaWM3Q _model_server_result.datetime_utc '2024-11-22 08:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5MQL # _exptl.entry_id 5MQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.642 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Masitinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MQL _cell.length_a 88.33 _cell.length_b 88.33 _cell.length_c 342.53 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 64 C SER 35 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc2 C OE2 GLU 156 C GLU 127 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc3 I MG MG . C MG 301 1_555 K O1P DCM . C DCM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C28 H30 N6 O S' _chem_comp.formula_weight 498.642 _chem_comp.id G65 _chem_comp.mon_nstd_flag . _chem_comp.name Masitinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBH G65 sing 118 n n CBI NBD G65 sing 119 n n CBH NBG G65 sing 120 n n CBC NBD G65 sing 121 n n CBC CAZ G65 sing 122 n n CAY CAZ G65 doub 123 n y CAY CAX G65 sing 124 n y NBG CBJ G65 sing 125 n n NBG CBF G65 sing 126 n n NBD CBE G65 sing 127 n n CAZ CBA G65 sing 128 n y CAX CAV G65 doub 129 n y CBE CBF G65 sing 130 n n CBA CBB G65 doub 131 n y CAV CBB G65 sing 132 n y CAV CAU G65 sing 133 n n OAW CAU G65 doub 134 n n CAU NAT G65 sing 135 n n CAH SAI G65 sing 136 n y CAH CAG G65 doub 137 n y NAT CAO G65 sing 138 n n SAI CAJ G65 sing 139 n y NAD CAE G65 doub 140 n y NAD CAC G65 sing 141 n y CAE CAF G65 sing 142 n y CAF CAG G65 sing 143 n n CAF CAA G65 doub 144 n y CAC CAB G65 doub 145 n y CAG NAK G65 sing 146 n y CAB CAA G65 sing 147 n y CAN CAO G65 doub 148 n y CAN CAM G65 sing 149 n y CAJ NAK G65 doub 150 n y CAJ NAL G65 sing 151 n n CAO CAP G65 sing 152 n y NAL CAM G65 sing 153 n n CAM CAR G65 doub 154 n y CAP CAQ G65 doub 155 n y CAR CAQ G65 sing 156 n y CAR CAS G65 sing 157 n n CBE H1 G65 sing 158 n n CBE H2 G65 sing 159 n n CBF H3 G65 sing 160 n n CBF H4 G65 sing 161 n n CBJ H6 G65 sing 162 n n CBJ H7 G65 sing 163 n n CBJ H8 G65 sing 164 n n CBH H9 G65 sing 165 n n CBH H10 G65 sing 166 n n CBI H11 G65 sing 167 n n CBI H12 G65 sing 168 n n CBC H14 G65 sing 169 n n CBC H15 G65 sing 170 n n CBA H16 G65 sing 171 n n CBB H17 G65 sing 172 n n CAY H18 G65 sing 173 n n CAX H19 G65 sing 174 n n NAT H20 G65 sing 175 n n CAN H21 G65 sing 176 n n CAP H22 G65 sing 177 n n CAQ H23 G65 sing 178 n n CAS H24 G65 sing 179 n n CAS H25 G65 sing 180 n n CAS H26 G65 sing 181 n n NAL H27 G65 sing 182 n n CAH H28 G65 sing 183 n n CAA H29 G65 sing 184 n n CAB H30 G65 sing 185 n n CAC H31 G65 sing 186 n n CAE H32 G65 sing 187 n n # _atom_sites.entry_id 5MQL _atom_sites.fract_transf_matrix[1][1] 0.011321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UDP A 1 301 500 UDP UDP . F 3 G65 A 1 302 600 G65 DRG . G 2 UDP B 1 301 500 UDP UDP . H 4 DCM B 1 302 550 DCM DCM . I 5 MG C 1 301 450 MG MG . J 2 UDP C 1 302 500 UDP UDP . K 4 DCM C 1 303 550 DCM DCM . L 2 UDP D 1 500 500 UDP UDP . M 6 HOH A 1 401 8 HOH HOH . M 6 HOH A 2 402 5 HOH HOH . M 6 HOH A 3 403 14 HOH HOH . M 6 HOH A 4 404 6 HOH HOH . M 6 HOH A 5 405 9 HOH HOH . N 6 HOH B 1 401 13 HOH HOH . N 6 HOH B 2 402 3 HOH HOH . N 6 HOH B 3 403 11 HOH HOH . O 6 HOH C 1 401 10 HOH HOH . O 6 HOH C 2 402 4 HOH HOH . O 6 HOH C 3 403 1 HOH HOH . O 6 HOH C 4 404 15 HOH HOH . O 6 HOH C 5 405 7 HOH HOH . P 6 HOH D 1 601 2 HOH HOH . P 6 HOH D 2 602 12 HOH HOH . P 6 HOH D 3 603 17 HOH HOH . P 6 HOH D 4 604 16 HOH HOH . P 6 HOH D 5 605 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBE G65 . . . F 3 37.901 90.268 6.484 1 141.37 ? CBE G65 302 A 1 HETATM 2 C CBF G65 . . . F 3 39.406 90.376 6.746 1 142.6 ? CBF G65 302 A 1 HETATM 3 N NBG G65 . . . F 3 40.242 90.154 5.538 1 142.54 ? NBG G65 302 A 1 HETATM 4 C CBJ G65 . . . F 3 41.608 89.865 5.984 1 143.53 ? CBJ G65 302 A 1 HETATM 5 C CBH G65 . . . F 3 39.847 89.017 4.687 1 140.05 ? CBH G65 302 A 1 HETATM 6 C CBI G65 . . . F 3 38.348 89.014 4.436 1 139.08 ? CBI G65 302 A 1 HETATM 7 N NBD G65 . . . F 3 37.599 89.046 5.709 1 139.07 ? NBD G65 302 A 1 HETATM 8 C CBC G65 . . . F 3 36.157 88.958 5.399 1 138.42 ? CBC G65 302 A 1 HETATM 9 C CAZ G65 . . . F 3 35.544 87.873 6.027 1 136.62 ? CAZ G65 302 A 1 HETATM 10 C CBA G65 . . . F 3 34.76 88.105 7.164 1 137.39 ? CBA G65 302 A 1 HETATM 11 C CBB G65 . . . F 3 34.146 87.036 7.81 1 136.06 ? CBB G65 302 A 1 HETATM 12 C CAY G65 . . . F 3 35.705 86.575 5.516 1 134.45 ? CAY G65 302 A 1 HETATM 13 C CAX G65 . . . F 3 35.103 85.497 6.169 1 133.16 ? CAX G65 302 A 1 HETATM 14 C CAV G65 . . . F 3 34.326 85.738 7.313 1 134.37 ? CAV G65 302 A 1 HETATM 15 C CAU G65 . . . F 3 33.725 84.672 7.969 1 134.17 ? CAU G65 302 A 1 HETATM 16 O OAW G65 . . . F 3 32.919 83.949 7.378 1 133.5 ? OAW G65 302 A 1 HETATM 17 N NAT G65 . . . F 3 34.116 84.531 9.259 1 135.06 ? NAT G65 302 A 1 HETATM 18 C CAO G65 . . . F 3 33.639 83.532 10.011 1 134.46 ? CAO G65 302 A 1 HETATM 19 C CAN G65 . . . F 3 34.014 82.205 9.756 1 132.95 ? CAN G65 302 A 1 HETATM 20 C CAP G65 . . . F 3 32.832 83.819 11.109 1 135.36 ? CAP G65 302 A 1 HETATM 21 C CAQ G65 . . . F 3 32.368 82.765 11.894 1 134.4 ? CAQ G65 302 A 1 HETATM 22 C CAR G65 . . . F 3 32.723 81.437 11.645 1 132.56 ? CAR G65 302 A 1 HETATM 23 C CAS G65 . . . F 3 32.198 80.498 12.52 1 132 ? CAS G65 302 A 1 HETATM 24 C CAM G65 . . . F 3 33.5 81.143 10.5 1 132.02 ? CAM G65 302 A 1 HETATM 25 N NAL G65 . . . F 3 33.974 79.903 10.238 1 131.25 ? NAL G65 302 A 1 HETATM 26 C CAJ G65 . . . F 3 33.225 78.85 9.87 1 130.62 ? CAJ G65 302 A 1 HETATM 27 N NAK G65 . . . F 3 33.698 77.592 9.89 1 129.33 ? NAK G65 302 A 1 HETATM 28 S SAI G65 . . . F 3 31.597 78.804 9.404 1 130.9 ? SAI G65 302 A 1 HETATM 29 C CAH G65 . . . F 3 31.559 77.109 9.256 1 128.92 ? CAH G65 302 A 1 HETATM 30 C CAG G65 . . . F 3 32.791 76.631 9.556 1 127.73 ? CAG G65 302 A 1 HETATM 31 C CAF G65 . . . F 3 33.107 75.312 9.541 1 124.95 ? CAF G65 302 A 1 HETATM 32 C CAA G65 . . . F 3 32.129 74.31 9.653 1 123.81 ? CAA G65 302 A 1 HETATM 33 C CAB G65 . . . F 3 32.485 72.956 9.649 1 122.86 ? CAB G65 302 A 1 HETATM 34 C CAC G65 . . . F 3 33.82 72.559 9.548 1 122.28 ? CAC G65 302 A 1 HETATM 35 N NAD G65 . . . F 3 34.816 73.539 9.436 1 122.54 ? NAD G65 302 A 1 HETATM 36 C CAE G65 . . . F 3 34.443 74.902 9.443 1 123.72 ? CAE G65 302 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #