data_5MQL
#
_model_server_result.job_id            uMUkU8QG4I-VC4KmUhOAag 
_model_server_result.datetime_utc      '2024-11-22 08:50:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mql 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    5MQL 
#
_exptl.entry_id    5MQL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.197 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MQL 
_cell.length_a            88.33 
_cell.length_b            88.33 
_cell.length_c            342.53 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MQL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG SER 64 C SER 35 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc2 C OE2 GLU 156 C GLU 127 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? 
metalc ? metalc3 I MG MG . C MG 301 1_555 K O1P DCM . C DCM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
#
_chem_comp.formula           'C9 H14 N3 O7 P' 
_chem_comp.formula_weight    307.197 
_chem_comp.id                DCM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DCM sing 83 n n 
N1 C6 DCM sing 84 n n 
N1 C1' DCM sing 85 n n 
C2 N3 DCM sing 86 n n 
C2 O2 DCM doub 87 n n 
N3 C4 DCM doub 88 n n 
C4 C5 DCM sing 89 n n 
C4 N4 DCM sing 90 n n 
C5 C6 DCM doub 91 n n 
C5 H5 DCM sing 92 n n 
C6 H6 DCM sing 93 n n 
N4 HN41 DCM sing 94 n n 
N4 HN42 DCM sing 95 n n 
C1' C2' DCM sing 96 n n 
C1' O4' DCM sing 97 n n 
C1' H1' DCM sing 98 n n 
C2' C3' DCM sing 99 n n 
C2' "H2'1" DCM sing 100 n n 
C2' "H2'2" DCM sing 101 n n 
C3' C4' DCM sing 102 n n 
C3' O3' DCM sing 103 n n 
C3' H3' DCM sing 104 n n 
C4' O4' DCM sing 105 n n 
C4' C5' DCM sing 106 n n 
C4' H4' DCM sing 107 n n 
O3' HO3' DCM sing 108 n n 
C5' O5' DCM sing 109 n n 
C5' "H5'1" DCM sing 110 n n 
C5' "H5'2" DCM sing 111 n n 
O5' P DCM sing 112 n n 
P O1P DCM doub 113 n n 
P O2P DCM sing 114 n n 
P O3P DCM sing 115 n n 
O2P HOP2 DCM sing 116 n n 
O3P HOP3 DCM sing 117 n n 
#
_atom_sites.entry_id                     5MQL 
_atom_sites.fract_transf_matrix[1][1]    0.011321 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UDP A 1 301 500 UDP UDP . 
F 3 G65 A 1 302 600 G65 DRG . 
G 2 UDP B 1 301 500 UDP UDP . 
H 4 DCM B 1 302 550 DCM DCM . 
I 5 MG C 1 301 450 MG MG . 
J 2 UDP C 1 302 500 UDP UDP . 
K 4 DCM C 1 303 550 DCM DCM . 
L 2 UDP D 1 500 500 UDP UDP . 
M 6 HOH A 1 401 8 HOH HOH . 
M 6 HOH A 2 402 5 HOH HOH . 
M 6 HOH A 3 403 14 HOH HOH . 
M 6 HOH A 4 404 6 HOH HOH . 
M 6 HOH A 5 405 9 HOH HOH . 
N 6 HOH B 1 401 13 HOH HOH . 
N 6 HOH B 2 402 3 HOH HOH . 
N 6 HOH B 3 403 11 HOH HOH . 
O 6 HOH C 1 401 10 HOH HOH . 
O 6 HOH C 2 402 4 HOH HOH . 
O 6 HOH C 3 403 1 HOH HOH . 
O 6 HOH C 4 404 15 HOH HOH . 
O 6 HOH C 5 405 7 HOH HOH . 
P 6 HOH D 1 601 2 HOH HOH . 
P 6 HOH D 2 602 12 HOH HOH . 
P 6 HOH D 3 603 17 HOH HOH . 
P 6 HOH D 4 604 16 HOH HOH . 
P 6 HOH D 5 605 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCM . . . H 4 62.877 75.126 17.967 1 109.66 ? N1 DCM 302 B 1 
HETATM 2 C C2 DCM . . . H 4 61.647 75.609 18.461 1 107.15 ? C2 DCM 302 B 1 
HETATM 3 N N3 DCM . . . H 4 60.749 74.707 18.953 1 105.96 ? N3 DCM 302 B 1 
HETATM 4 C C4 DCM . . . H 4 61.042 73.394 18.996 1 105.7 ? C4 DCM 302 B 1 
HETATM 5 C C5 DCM . . . H 4 62.301 72.893 18.55 1 106.97 ? C5 DCM 302 B 1 
HETATM 6 C C6 DCM . . . H 4 63.179 73.778 18.048 1 108.51 ? C6 DCM 302 B 1 
HETATM 7 O O2 DCM . . . H 4 61.436 76.827 18.495 1 106.47 ? O2 DCM 302 B 1 
HETATM 8 N N4 DCM . . . H 4 60.112 72.558 19.45 1 105.1 ? N4 DCM 302 B 1 
HETATM 9 C C1' DCM . . . H 4 63.794 76.066 17.271 1 113.37 ? C1' DCM 302 B 1 
HETATM 10 C C2' DCM . . . H 4 64.604 76.957 18.198 1 114.42 ? C2' DCM 302 B 1 
HETATM 11 C C3' DCM . . . H 4 65.836 77.258 17.354 1 116.36 ? C3' DCM 302 B 1 
HETATM 12 C C4' DCM . . . H 4 66.031 75.962 16.559 1 117.79 ? C4' DCM 302 B 1 
HETATM 13 O O4' DCM . . . H 4 64.745 75.3 16.539 1 115.46 ? O4' DCM 302 B 1 
HETATM 14 O O3' DCM . . . H 4 65.648 78.389 16.497 1 116.73 ? O3' DCM 302 B 1 
HETATM 15 C C5' DCM . . . H 4 67.088 75.034 17.115 1 120.72 ? C5' DCM 302 B 1 
HETATM 16 O O5' DCM . . . H 4 67.522 74.084 16.115 1 124.54 ? O5' DCM 302 B 1 
HETATM 17 P P DCM . . . H 4 68.806 73.106 16.379 1 127.41 ? P DCM 302 B 1 
HETATM 18 O O1P DCM . . . H 4 69.965 73.688 15.556 1 129.24 ? O1P DCM 302 B 1 
HETATM 19 O O2P DCM . . . H 4 68.474 71.712 15.762 1 127.72 ? O2P DCM 302 B 1 
HETATM 20 O O3P DCM . . . H 4 69.099 73.073 17.851 1 126.21 ? O3P DCM 302 B 1 
#
_model_server_stats.io_time_ms              103 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           385 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           20 
#