data_5MQT
#
_model_server_result.job_id            F_X0TwDW8NVM78dLgI7A6A 
_model_server_result.datetime_utc      '2024-11-22 14:07:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mqt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    5MQT 
#
_exptl.entry_id    5MQT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.603 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MQT 
_cell.length_a            93.3 
_cell.length_b            93.3 
_cell.length_c            342.715 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MQT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,N,O 1 1 
C,D,J,K,L,M,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            G 
_struct_conn.ptnr1_label_atom_id            MG 
_struct_conn.ptnr1_label_comp_id            MG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             MG 
_struct_conn.ptnr1_auth_seq_id              301 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            O1P 
_struct_conn.ptnr2_label_comp_id            DCM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             DCM 
_struct_conn.ptnr2_auth_seq_id              303 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.398 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C29 H31 N7 O' 
_chem_comp.formula_weight    493.603 
_chem_comp.id                STI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     STI-571;IMATINIB 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C6 STI doub 325 n y 
C1 C2 STI sing 326 n y 
C1 H11 STI sing 327 n n 
C6 C5 STI sing 328 n y 
C6 H61 STI sing 329 n n 
C5 C4 STI doub 330 n y 
C5 C7 STI sing 331 n y 
C4 N3 STI sing 332 n y 
C4 H41 STI sing 333 n n 
N3 C2 STI doub 334 n y 
C2 H21 STI sing 335 n n 
C7 C12 STI doub 336 n y 
C7 N8 STI sing 337 n y 
C12 C11 STI sing 338 n y 
C12 H121 STI sing 339 n n 
C11 N10 STI doub 340 n y 
C11 H111 STI sing 341 n n 
N10 C9 STI sing 342 n y 
C9 N8 STI doub 343 n y 
C9 N13 STI sing 344 n n 
N13 C14 STI sing 345 n n 
N13 H131 STI sing 346 n n 
C14 C19 STI doub 347 n y 
C14 C15 STI sing 348 n y 
C19 C18 STI sing 349 n y 
C19 C20 STI sing 350 n n 
C18 C17 STI doub 351 n y 
C18 H181 STI sing 352 n n 
C17 C16 STI sing 353 n y 
C17 H171 STI sing 354 n n 
C16 C15 STI doub 355 n y 
C16 N21 STI sing 356 n n 
C15 H151 STI sing 357 n n 
N21 C22 STI sing 358 n n 
N21 H211 STI sing 359 n n 
C22 C23 STI sing 360 n n 
C22 O29 STI doub 361 n n 
C23 C25 STI doub 362 n y 
C23 C29 STI sing 363 n y 
C25 C26 STI sing 364 n y 
C25 H251 STI sing 365 n n 
C26 C27 STI doub 366 n y 
C26 H261 STI sing 367 n n 
C27 C28 STI sing 368 n y 
C27 C46 STI sing 369 n n 
C28 C29 STI doub 370 n y 
C28 H281 STI sing 371 n n 
C29 H291 STI sing 372 n n 
C46 N48 STI sing 373 n n 
C46 H461 STI sing 374 n n 
C46 H462 STI sing 375 n n 
N48 C53 STI sing 376 n n 
N48 C49 STI sing 377 n n 
C53 C52 STI sing 378 n n 
C53 H531 STI sing 379 n n 
C53 H532 STI sing 380 n n 
C52 N51 STI sing 381 n n 
C52 H521 STI sing 382 n n 
C52 H522 STI sing 383 n n 
N51 C54 STI sing 384 n n 
N51 C50 STI sing 385 n n 
C54 H541 STI sing 386 n n 
C54 H542 STI sing 387 n n 
C54 H543 STI sing 388 n n 
C50 C49 STI sing 389 n n 
C50 H501 STI sing 390 n n 
C50 H502 STI sing 391 n n 
C49 H491 STI sing 392 n n 
C49 H492 STI sing 393 n n 
C20 H201 STI sing 394 n n 
C20 H202 STI sing 395 n n 
C20 H203 STI sing 396 n n 
#
_atom_sites.entry_id                     5MQT 
_atom_sites.fract_transf_matrix[1][1]    0.010718 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UDP A 1 301 500 UDP UDP . 
F 3 STI A 1 302 600 STI STI . 
G 4 MG B 1 301 450 MG MG . 
H 2 UDP B 1 302 500 UDP UDP . 
I 5 DCM B 1 303 550 DCM DCM . 
J 2 UDP C 1 301 500 UDP UDP . 
K 3 STI C 1 302 600 STI STI . 
L 2 UDP D 1 301 500 UDP UDP . 
M 5 DCM D 1 302 550 DCM DCM . 
N 6 HOH A 1 401 8 HOH HOH . 
N 6 HOH A 2 402 12 HOH HOH . 
N 6 HOH A 3 403 9 HOH HOH . 
N 6 HOH A 4 404 14 HOH HOH . 
N 6 HOH A 5 405 2 HOH HOH . 
O 6 HOH B 1 401 3 HOH HOH . 
O 6 HOH B 2 402 4 HOH HOH . 
P 6 HOH C 1 401 10 HOH HOH . 
P 6 HOH C 2 402 6 HOH HOH . 
P 6 HOH C 3 403 7 HOH HOH . 
P 6 HOH C 4 404 5 HOH HOH . 
Q 6 HOH D 1 401 15 HOH HOH . 
Q 6 HOH D 2 402 11 HOH HOH . 
Q 6 HOH D 3 403 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 STI . . . K 3 -17.011 154.637 74.252 1 121.88 ? C1 STI 302 C 1 
HETATM 2 C C6 STI . . . K 3 -15.924 153.862 74.622 1 120.2 ? C6 STI 302 C 1 
HETATM 3 C C5 STI . . . K 3 -14.744 154.471 75.051 1 118 ? C5 STI 302 C 1 
HETATM 4 C C4 STI . . . K 3 -14.722 155.863 75.058 1 119.44 ? C4 STI 302 C 1 
HETATM 5 N N3 STI . . . K 3 -15.765 156.633 74.707 1 121.31 ? N3 STI 302 C 1 
HETATM 6 C C2 STI . . . K 3 -16.889 156.013 74.319 1 122.11 ? C2 STI 302 C 1 
HETATM 7 C C7 STI . . . K 3 -13.596 153.672 75.551 1 115.75 ? C7 STI 302 C 1 
HETATM 8 C C12 STI . . . K 3 -12.322 154.2 75.718 1 112.94 ? C12 STI 302 C 1 
HETATM 9 C C11 STI . . . K 3 -11.318 153.311 76.061 1 114.86 ? C11 STI 302 C 1 
HETATM 10 N N10 STI . . . K 3 -11.517 151.988 76.209 1 118.16 ? N10 STI 302 C 1 
HETATM 11 C C9 STI . . . K 3 -12.785 151.571 76.019 1 121.35 ? C9 STI 302 C 1 
HETATM 12 N N8 STI . . . K 3 -13.84 152.361 75.739 1 118.96 ? N8 STI 302 C 1 
HETATM 13 N N13 STI . . . K 3 -13.155 150.261 75.831 1 125.59 ? N13 STI 302 C 1 
HETATM 14 C C14 STI . . . K 3 -12.619 148.973 75.519 1 125.42 ? C14 STI 302 C 1 
HETATM 15 C C19 STI . . . K 3 -12.725 148.516 74.181 1 123.72 ? C19 STI 302 C 1 
HETATM 16 C C18 STI . . . K 3 -12.409 147.184 73.924 1 124.37 ? C18 STI 302 C 1 
HETATM 17 C C17 STI . . . K 3 -12.044 146.311 74.929 1 125.51 ? C17 STI 302 C 1 
HETATM 18 C C16 STI . . . K 3 -11.966 146.753 76.244 1 125.9 ? C16 STI 302 C 1 
HETATM 19 C C15 STI . . . K 3 -12.212 148.097 76.532 1 125.46 ? C15 STI 302 C 1 
HETATM 20 N N21 STI . . . K 3 -11.772 145.713 77.191 1 127.38 ? N21 STI 302 C 1 
HETATM 21 C C22 STI . . . K 3 -11.294 145.741 78.465 1 127.05 ? C22 STI 302 C 1 
HETATM 22 C C23 STI . . . K 3 -10.911 144.406 79.027 1 130.43 ? C23 STI 302 C 1 
HETATM 23 C C25 STI . . . K 3 -10.398 144.238 80.314 1 131.53 ? C25 STI 302 C 1 
HETATM 24 C C26 STI . . . K 3 -9.958 142.994 80.74 1 134.16 ? C26 STI 302 C 1 
HETATM 25 C C27 STI . . . K 3 -10.011 141.887 79.898 1 135.96 ? C27 STI 302 C 1 
HETATM 26 C C28 STI . . . K 3 -10.552 142.049 78.631 1 135.38 ? C28 STI 302 C 1 
HETATM 27 C C29 STI . . . K 3 -11 143.286 78.199 1 132.95 ? C29 STI 302 C 1 
HETATM 28 C C46 STI . . . K 3 -9.421 140.562 80.313 1 138.43 ? C46 STI 302 C 1 
HETATM 29 N N48 STI . . . K 3 -7.957 140.538 80.2 1 139.14 ? N48 STI 302 C 1 
HETATM 30 C C53 STI . . . K 3 -7.49 139.347 79.486 1 141.59 ? C53 STI 302 C 1 
HETATM 31 C C52 STI . . . K 3 -5.973 139.373 79.345 1 142.41 ? C52 STI 302 C 1 
HETATM 32 N N51 STI . . . K 3 -5.322 139.451 80.654 1 142.45 ? N51 STI 302 C 1 
HETATM 33 C C54 STI . . . K 3 -3.867 139.512 80.501 1 142.56 ? C54 STI 302 C 1 
HETATM 34 C C50 STI . . . K 3 -5.81 140.623 81.38 1 140.64 ? C50 STI 302 C 1 
HETATM 35 C C49 STI . . . K 3 -7.322 140.585 81.521 1 140.21 ? C49 STI 302 C 1 
HETATM 36 O O29 STI . . . K 3 -11.159 146.769 79.128 1 124.42 ? O29 STI 302 C 1 
HETATM 37 C C20 STI . . . K 3 -13.254 149.394 73.078 1 121.84 ? C20 STI 302 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           37 
#