data_5MQT # _model_server_result.job_id Z3nTAk2v7uKRymEStJjE5g _model_server_result.datetime_utc '2024-11-22 14:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":302}' # _entry.id 5MQT # _exptl.entry_id 5MQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.197 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MQT _cell.length_a 93.3 _cell.length_b 93.3 _cell.length_c 342.715 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,N,O 1 1 C,D,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id MG _struct_conn.ptnr1_label_comp_id MG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id MG _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id O1P _struct_conn.ptnr2_label_comp_id DCM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id DCM _struct_conn.ptnr2_auth_seq_id 303 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.398 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H14 N3 O7 P' _chem_comp.formula_weight 307.197 _chem_comp.id DCM _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCM sing 83 n n N1 C6 DCM sing 84 n n N1 C1' DCM sing 85 n n C2 N3 DCM sing 86 n n C2 O2 DCM doub 87 n n N3 C4 DCM doub 88 n n C4 C5 DCM sing 89 n n C4 N4 DCM sing 90 n n C5 C6 DCM doub 91 n n C5 H5 DCM sing 92 n n C6 H6 DCM sing 93 n n N4 HN41 DCM sing 94 n n N4 HN42 DCM sing 95 n n C1' C2' DCM sing 96 n n C1' O4' DCM sing 97 n n C1' H1' DCM sing 98 n n C2' C3' DCM sing 99 n n C2' "H2'1" DCM sing 100 n n C2' "H2'2" DCM sing 101 n n C3' C4' DCM sing 102 n n C3' O3' DCM sing 103 n n C3' H3' DCM sing 104 n n C4' O4' DCM sing 105 n n C4' C5' DCM sing 106 n n C4' H4' DCM sing 107 n n O3' HO3' DCM sing 108 n n C5' O5' DCM sing 109 n n C5' "H5'1" DCM sing 110 n n C5' "H5'2" DCM sing 111 n n O5' P DCM sing 112 n n P O1P DCM doub 113 n n P O2P DCM sing 114 n n P O3P DCM sing 115 n n O2P HOP2 DCM sing 116 n n O3P HOP3 DCM sing 117 n n # _atom_sites.entry_id 5MQT _atom_sites.fract_transf_matrix[1][1] 0.010718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UDP A 1 301 500 UDP UDP . F 3 STI A 1 302 600 STI STI . G 4 MG B 1 301 450 MG MG . H 2 UDP B 1 302 500 UDP UDP . I 5 DCM B 1 303 550 DCM DCM . J 2 UDP C 1 301 500 UDP UDP . K 3 STI C 1 302 600 STI STI . L 2 UDP D 1 301 500 UDP UDP . M 5 DCM D 1 302 550 DCM DCM . N 6 HOH A 1 401 8 HOH HOH . N 6 HOH A 2 402 12 HOH HOH . N 6 HOH A 3 403 9 HOH HOH . N 6 HOH A 4 404 14 HOH HOH . N 6 HOH A 5 405 2 HOH HOH . O 6 HOH B 1 401 3 HOH HOH . O 6 HOH B 2 402 4 HOH HOH . P 6 HOH C 1 401 10 HOH HOH . P 6 HOH C 2 402 6 HOH HOH . P 6 HOH C 3 403 7 HOH HOH . P 6 HOH C 4 404 5 HOH HOH . Q 6 HOH D 1 401 15 HOH HOH . Q 6 HOH D 2 402 11 HOH HOH . Q 6 HOH D 3 403 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCM . . . M 5 18.587 151.88 67.457 1 120.15 ? N1 DCM 302 D 1 HETATM 2 C C2 DCM . . . M 5 17.319 151.313 67.199 1 117.53 ? C2 DCM 302 D 1 HETATM 3 N N3 DCM . . . M 5 16.303 152.148 66.825 1 115.68 ? N3 DCM 302 D 1 HETATM 4 C C4 DCM . . . M 5 16.513 153.47 66.677 1 114.52 ? C4 DCM 302 D 1 HETATM 5 C C5 DCM . . . M 5 17.806 154.045 66.854 1 116.18 ? C5 DCM 302 D 1 HETATM 6 C C6 DCM . . . M 5 18.801 153.227 67.235 1 118.46 ? C6 DCM 302 D 1 HETATM 7 O O2 DCM . . . M 5 17.17 150.082 67.253 1 116.27 ? O2 DCM 302 D 1 HETATM 8 N N4 DCM . . . M 5 15.464 154.251 66.425 1 113.59 ? N4 DCM 302 D 1 HETATM 9 C C1' DCM . . . M 5 19.627 151.063 68.158 1 124.29 ? C1' DCM 302 D 1 HETATM 10 C C2' DCM . . . M 5 20.353 150.051 67.292 1 125.94 ? C2' DCM 302 D 1 HETATM 11 C C3' DCM . . . M 5 21.678 149.882 68.03 1 128.04 ? C3' DCM 302 D 1 HETATM 12 C C4' DCM . . . M 5 21.903 151.251 68.682 1 130.11 ? C4' DCM 302 D 1 HETATM 13 O O4' DCM . . . M 5 20.636 151.943 68.632 1 126.72 ? O4' DCM 302 D 1 HETATM 14 O O3' DCM . . . M 5 21.604 148.857 69.023 1 128.39 ? O3' DCM 302 D 1 HETATM 15 C C5' DCM . . . M 5 22.997 152.116 68.101 1 135.29 ? C5' DCM 302 D 1 HETATM 16 O O5' DCM . . . M 5 23.195 153.24 68.993 1 143.8 ? O5' DCM 302 D 1 HETATM 17 P P DCM . . . M 5 24.335 154.41 68.833 1 151.58 ? P DCM 302 D 1 HETATM 18 O O1P DCM . . . M 5 24.856 154.312 67.438 1 152.09 ? O1P DCM 302 D 1 HETATM 19 O O2P DCM . . . M 5 23.689 155.779 69.146 1 152.73 ? O2P DCM 302 D 1 HETATM 20 O O3P DCM . . . M 5 25.416 154.197 69.936 1 153.49 ? O3P DCM 302 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #