data_5MQY # _model_server_result.job_id cE1RJAbxyp7FBptRdUNeZw _model_server_result.datetime_utc '2024-11-22 10:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5MQY # _exptl.entry_id 5MQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MQY _cell.length_a 45.907 _cell.length_b 57.2 _cell.length_c 75.735 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C24 GH4 . A GH4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5MQY _atom_sites.fract_transf_matrix[1][1] 0.021783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GH4 A 1 301 1 GH4 024 . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 3 EDO A 1 305 4 EDO EDO . G 3 EDO A 1 306 5 EDO EDO . H 3 EDO A 1 307 6 EDO EDO . I 3 EDO A 1 308 7 EDO EDO . J 3 EDO A 1 309 8 EDO EDO . K 4 HOH A 1 401 170 HOH HOH . K 4 HOH A 2 402 179 HOH HOH . K 4 HOH A 3 403 248 HOH HOH . K 4 HOH A 4 404 150 HOH HOH . K 4 HOH A 5 405 192 HOH HOH . K 4 HOH A 6 406 176 HOH HOH . K 4 HOH A 7 407 196 HOH HOH . K 4 HOH A 8 408 8 HOH HOH . K 4 HOH A 9 409 230 HOH HOH . K 4 HOH A 10 410 104 HOH HOH . K 4 HOH A 11 411 31 HOH HOH . K 4 HOH A 12 412 81 HOH HOH . K 4 HOH A 13 413 163 HOH HOH . K 4 HOH A 14 414 162 HOH HOH . K 4 HOH A 15 415 48 HOH HOH . K 4 HOH A 16 416 101 HOH HOH . K 4 HOH A 17 417 202 HOH HOH . K 4 HOH A 18 418 59 HOH HOH . K 4 HOH A 19 419 207 HOH HOH . K 4 HOH A 20 420 263 HOH HOH . K 4 HOH A 21 421 72 HOH HOH . K 4 HOH A 22 422 198 HOH HOH . K 4 HOH A 23 423 45 HOH HOH . K 4 HOH A 24 424 217 HOH HOH . K 4 HOH A 25 425 11 HOH HOH . K 4 HOH A 26 426 37 HOH HOH . K 4 HOH A 27 427 77 HOH HOH . K 4 HOH A 28 428 121 HOH HOH . K 4 HOH A 29 429 281 HOH HOH . K 4 HOH A 30 430 19 HOH HOH . K 4 HOH A 31 431 20 HOH HOH . K 4 HOH A 32 432 173 HOH HOH . K 4 HOH A 33 433 220 HOH HOH . K 4 HOH A 34 434 26 HOH HOH . K 4 HOH A 35 435 112 HOH HOH . K 4 HOH A 36 436 47 HOH HOH . K 4 HOH A 37 437 89 HOH HOH . K 4 HOH A 38 438 199 HOH HOH . K 4 HOH A 39 439 94 HOH HOH . K 4 HOH A 40 440 200 HOH HOH . K 4 HOH A 41 441 214 HOH HOH . K 4 HOH A 42 442 93 HOH HOH . K 4 HOH A 43 443 7 HOH HOH . K 4 HOH A 44 444 13 HOH HOH . K 4 HOH A 45 445 246 HOH HOH . K 4 HOH A 46 446 69 HOH HOH . K 4 HOH A 47 447 257 HOH HOH . K 4 HOH A 48 448 138 HOH HOH . K 4 HOH A 49 449 270 HOH HOH . K 4 HOH A 50 450 46 HOH HOH . K 4 HOH A 51 451 65 HOH HOH . K 4 HOH A 52 452 124 HOH HOH . K 4 HOH A 53 453 203 HOH HOH . K 4 HOH A 54 454 6 HOH HOH . K 4 HOH A 55 455 135 HOH HOH . K 4 HOH A 56 456 17 HOH HOH . K 4 HOH A 57 457 215 HOH HOH . K 4 HOH A 58 458 194 HOH HOH . K 4 HOH A 59 459 131 HOH HOH . K 4 HOH A 60 460 50 HOH HOH . K 4 HOH A 61 461 75 HOH HOH . K 4 HOH A 62 462 9 HOH HOH . K 4 HOH A 63 463 111 HOH HOH . K 4 HOH A 64 464 66 HOH HOH . K 4 HOH A 65 465 97 HOH HOH . K 4 HOH A 66 466 25 HOH HOH . K 4 HOH A 67 467 22 HOH HOH . K 4 HOH A 68 468 15 HOH HOH . K 4 HOH A 69 469 139 HOH HOH . K 4 HOH A 70 470 108 HOH HOH . K 4 HOH A 71 471 165 HOH HOH . K 4 HOH A 72 472 132 HOH HOH . K 4 HOH A 73 473 134 HOH HOH . K 4 HOH A 74 474 272 HOH HOH . K 4 HOH A 75 475 264 HOH HOH . K 4 HOH A 76 476 151 HOH HOH . K 4 HOH A 77 477 182 HOH HOH . K 4 HOH A 78 478 262 HOH HOH . K 4 HOH A 79 479 136 HOH HOH . K 4 HOH A 80 480 33 HOH HOH . K 4 HOH A 81 481 34 HOH HOH . K 4 HOH A 82 482 60 HOH HOH . K 4 HOH A 83 483 278 HOH HOH . K 4 HOH A 84 484 32 HOH HOH . K 4 HOH A 85 485 10 HOH HOH . K 4 HOH A 86 486 137 HOH HOH . K 4 HOH A 87 487 52 HOH HOH . K 4 HOH A 88 488 27 HOH HOH . K 4 HOH A 89 489 195 HOH HOH . K 4 HOH A 90 490 120 HOH HOH . K 4 HOH A 91 491 38 HOH HOH . K 4 HOH A 92 492 14 HOH HOH . K 4 HOH A 93 493 54 HOH HOH . K 4 HOH A 94 494 189 HOH HOH . K 4 HOH A 95 495 51 HOH HOH . K 4 HOH A 96 496 149 HOH HOH . K 4 HOH A 97 497 216 HOH HOH . K 4 HOH A 98 498 247 HOH HOH . K 4 HOH A 99 499 40 HOH HOH . K 4 HOH A 100 500 36 HOH HOH . K 4 HOH A 101 501 30 HOH HOH . K 4 HOH A 102 502 188 HOH HOH . K 4 HOH A 103 503 159 HOH HOH . K 4 HOH A 104 504 55 HOH HOH . K 4 HOH A 105 505 78 HOH HOH . K 4 HOH A 106 506 110 HOH HOH . K 4 HOH A 107 507 105 HOH HOH . K 4 HOH A 108 508 190 HOH HOH . K 4 HOH A 109 509 153 HOH HOH . K 4 HOH A 110 510 35 HOH HOH . K 4 HOH A 111 511 12 HOH HOH . K 4 HOH A 112 512 16 HOH HOH . K 4 HOH A 113 513 29 HOH HOH . K 4 HOH A 114 514 82 HOH HOH . K 4 HOH A 115 515 84 HOH HOH . K 4 HOH A 116 516 277 HOH HOH . K 4 HOH A 117 517 62 HOH HOH . K 4 HOH A 118 518 96 HOH HOH . K 4 HOH A 119 519 64 HOH HOH . K 4 HOH A 120 520 80 HOH HOH . K 4 HOH A 121 521 68 HOH HOH . K 4 HOH A 122 522 53 HOH HOH . K 4 HOH A 123 523 226 HOH HOH . K 4 HOH A 124 524 49 HOH HOH . K 4 HOH A 125 525 23 HOH HOH . K 4 HOH A 126 526 85 HOH HOH . K 4 HOH A 127 527 106 HOH HOH . K 4 HOH A 128 528 181 HOH HOH . K 4 HOH A 129 529 187 HOH HOH . K 4 HOH A 130 530 177 HOH HOH . K 4 HOH A 131 531 271 HOH HOH . K 4 HOH A 132 532 184 HOH HOH . K 4 HOH A 133 533 76 HOH HOH . K 4 HOH A 134 534 283 HOH HOH . K 4 HOH A 135 535 107 HOH HOH . K 4 HOH A 136 536 92 HOH HOH . K 4 HOH A 137 537 186 HOH HOH . K 4 HOH A 138 538 44 HOH HOH . K 4 HOH A 139 539 73 HOH HOH . K 4 HOH A 140 540 197 HOH HOH . K 4 HOH A 141 541 21 HOH HOH . K 4 HOH A 142 542 63 HOH HOH . K 4 HOH A 143 543 86 HOH HOH . K 4 HOH A 144 544 227 HOH HOH . K 4 HOH A 145 545 157 HOH HOH . K 4 HOH A 146 546 285 HOH HOH . K 4 HOH A 147 547 100 HOH HOH . K 4 HOH A 148 548 79 HOH HOH . K 4 HOH A 149 549 102 HOH HOH . K 4 HOH A 150 550 4 HOH HOH . K 4 HOH A 151 551 58 HOH HOH . K 4 HOH A 152 552 28 HOH HOH . K 4 HOH A 153 553 74 HOH HOH . K 4 HOH A 154 554 67 HOH HOH . K 4 HOH A 155 555 251 HOH HOH . K 4 HOH A 156 556 201 HOH HOH . K 4 HOH A 157 557 128 HOH HOH . K 4 HOH A 158 558 129 HOH HOH . K 4 HOH A 159 559 88 HOH HOH . K 4 HOH A 160 560 42 HOH HOH . K 4 HOH A 161 561 205 HOH HOH . K 4 HOH A 162 562 185 HOH HOH . K 4 HOH A 163 563 193 HOH HOH . K 4 HOH A 164 564 71 HOH HOH . K 4 HOH A 165 565 231 HOH HOH . K 4 HOH A 166 566 133 HOH HOH . K 4 HOH A 167 567 156 HOH HOH . K 4 HOH A 168 568 180 HOH HOH . K 4 HOH A 169 569 212 HOH HOH . K 4 HOH A 170 570 172 HOH HOH . K 4 HOH A 171 571 125 HOH HOH . K 4 HOH A 172 572 160 HOH HOH . K 4 HOH A 173 573 171 HOH HOH . K 4 HOH A 174 574 269 HOH HOH . K 4 HOH A 175 575 206 HOH HOH . K 4 HOH A 176 576 268 HOH HOH . K 4 HOH A 177 577 18 HOH HOH . K 4 HOH A 178 578 218 HOH HOH . K 4 HOH A 179 579 141 HOH HOH . K 4 HOH A 180 580 2 HOH HOH . K 4 HOH A 181 581 292 HOH HOH . K 4 HOH A 182 582 154 HOH HOH . K 4 HOH A 183 583 143 HOH HOH . K 4 HOH A 184 584 234 HOH HOH . K 4 HOH A 185 585 98 HOH HOH . K 4 HOH A 186 586 191 HOH HOH . K 4 HOH A 187 587 167 HOH HOH . K 4 HOH A 188 588 123 HOH HOH . K 4 HOH A 189 589 43 HOH HOH . K 4 HOH A 190 590 260 HOH HOH . K 4 HOH A 191 591 41 HOH HOH . K 4 HOH A 192 592 175 HOH HOH . K 4 HOH A 193 593 83 HOH HOH . K 4 HOH A 194 594 39 HOH HOH . K 4 HOH A 195 595 103 HOH HOH . K 4 HOH A 196 596 225 HOH HOH . K 4 HOH A 197 597 258 HOH HOH . K 4 HOH A 198 598 116 HOH HOH . K 4 HOH A 199 599 166 HOH HOH . K 4 HOH A 200 600 219 HOH HOH . K 4 HOH A 201 601 56 HOH HOH . K 4 HOH A 202 602 130 HOH HOH . K 4 HOH A 203 603 208 HOH HOH . K 4 HOH A 204 604 1 HOH HOH . K 4 HOH A 205 605 142 HOH HOH . K 4 HOH A 206 606 95 HOH HOH . K 4 HOH A 207 607 119 HOH HOH . K 4 HOH A 208 608 91 HOH HOH . K 4 HOH A 209 609 113 HOH HOH . K 4 HOH A 210 610 294 HOH HOH . K 4 HOH A 211 611 280 HOH HOH . K 4 HOH A 212 612 282 HOH HOH . K 4 HOH A 213 613 286 HOH HOH . K 4 HOH A 214 614 204 HOH HOH . K 4 HOH A 215 615 236 HOH HOH . K 4 HOH A 216 616 297 HOH HOH . K 4 HOH A 217 617 233 HOH HOH . K 4 HOH A 218 618 266 HOH HOH . K 4 HOH A 219 619 298 HOH HOH . K 4 HOH A 220 620 127 HOH HOH . K 4 HOH A 221 621 117 HOH HOH . K 4 HOH A 222 622 164 HOH HOH . K 4 HOH A 223 623 152 HOH HOH . K 4 HOH A 224 624 5 HOH HOH . K 4 HOH A 225 625 250 HOH HOH . K 4 HOH A 226 626 115 HOH HOH . K 4 HOH A 227 627 244 HOH HOH . K 4 HOH A 228 628 240 HOH HOH . K 4 HOH A 229 629 174 HOH HOH . K 4 HOH A 230 630 122 HOH HOH . K 4 HOH A 231 631 228 HOH HOH . K 4 HOH A 232 632 140 HOH HOH . K 4 HOH A 233 633 243 HOH HOH . K 4 HOH A 234 634 178 HOH HOH . K 4 HOH A 235 635 242 HOH HOH . K 4 HOH A 236 636 238 HOH HOH . K 4 HOH A 237 637 57 HOH HOH . K 4 HOH A 238 638 249 HOH HOH . K 4 HOH A 239 639 235 HOH HOH . K 4 HOH A 240 640 168 HOH HOH . K 4 HOH A 241 641 169 HOH HOH . K 4 HOH A 242 642 245 HOH HOH . K 4 HOH A 243 643 161 HOH HOH . K 4 HOH A 244 644 241 HOH HOH . K 4 HOH A 245 645 146 HOH HOH . K 4 HOH A 246 646 144 HOH HOH . K 4 HOH A 247 647 147 HOH HOH . K 4 HOH A 248 648 300 HOH HOH . K 4 HOH A 249 649 183 HOH HOH . K 4 HOH A 250 650 145 HOH HOH . K 4 HOH A 251 651 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 65.552 53.178 -2.512 1 38.66 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 3 66.82 53.738 -2.93 1 34.12 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 3 65.156 51.873 -3.173 1 34.04 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 3 66.259 51.044 -3.683 1 41.9 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #