data_5MR2 # _model_server_result.job_id Cpy2TtmZaOJtwj4AbzXmVg _model_server_result.datetime_utc '2024-10-19 23:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 5MR2 # _exptl.entry_id 5MR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation 'S293A, S296A, S297A' _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.62 _cell.angle_gamma 90 _cell.entry_id 5MR2 _cell.length_a 69.92 _cell.length_b 79.19 _cell.length_c 81.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,F,I 1 1 C,F,I 1 2 A,B,D,E,G,H 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.170369 0 79.277287 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 182 1_555 A SG CYS 108 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 39 A CYS 211 1_555 A SG CYS 71 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 10 B CYS 182 1_555 B SG CYS 108 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 39 B CYS 211 1_555 B SG CYS 71 B CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 10 C CYS 182 1_555 C SG CYS 108 C CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 C SG CYS 39 C CYS 211 1_555 C SG CYS 71 C CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 A ND2 ASN 82 A ASN 254 1_555 D C1 NAG . A NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 B ND2 ASN 82 B ASN 254 1_555 E C1 NAG . B NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C ND2 ASN 82 C ASN 254 1_555 F C1 NAG . C NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5MR2 _atom_sites.fract_transf_matrix[1][1] 0.014302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 900 900 NAG NAG . E 2 NAG B 1 900 900 NAG NAG . F 2 NAG C 1 900 900 NAG NAG . G 3 HOH A 1 1001 1001 HOH HOH . G 3 HOH A 2 1002 1002 HOH HOH . G 3 HOH A 3 1003 1003 HOH HOH . H 3 HOH B 1 1001 1001 HOH HOH . H 3 HOH B 2 1002 1002 HOH HOH . H 3 HOH B 3 1003 1003 HOH HOH . H 3 HOH B 4 1004 1006 HOH HOH . H 3 HOH B 5 1005 1005 HOH HOH . H 3 HOH B 6 1006 1004 HOH HOH . I 3 HOH C 1 1001 1001 HOH HOH . I 3 HOH C 2 1002 1002 HOH HOH . I 3 HOH C 3 1003 1009 HOH HOH . I 3 HOH C 4 1004 1005 HOH HOH . I 3 HOH C 5 1005 1006 HOH HOH . I 3 HOH C 6 1006 1003 HOH HOH . I 3 HOH C 7 1007 1004 HOH HOH . I 3 HOH C 8 1008 1010 HOH HOH . I 3 HOH C 9 1009 1011 HOH HOH . I 3 HOH C 10 1010 1008 HOH HOH . I 3 HOH C 11 1011 1012 HOH HOH . I 3 HOH C 12 1012 1007 HOH HOH . I 3 HOH C 13 1013 1013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 5.221 -3.048 -21.032 1 129.28 ? C1 NAG 900 A 1 HETATM 2 C C2 NAG . . . D 2 5.296 -2.489 -19.59 1 123.11 ? C2 NAG 900 A 1 HETATM 3 C C3 NAG . . . D 2 3.965 -2.674 -18.844 1 123.42 ? C3 NAG 900 A 1 HETATM 4 C C4 NAG . . . D 2 2.783 -2.216 -19.685 1 126.1 ? C4 NAG 900 A 1 HETATM 5 C C5 NAG . . . D 2 2.82 -2.938 -21.015 1 129.09 ? C5 NAG 900 A 1 HETATM 6 C C6 NAG . . . D 2 1.706 -2.532 -21.947 1 131.68 ? C6 NAG 900 A 1 HETATM 7 C C7 NAG . . . D 2 6.554 -3.01 -17.526 1 116.18 ? C7 NAG 900 A 1 HETATM 8 C C8 NAG . . . D 2 7.703 -3.775 -16.935 1 111.79 ? C8 NAG 900 A 1 HETATM 9 N N2 NAG . . . D 2 6.373 -3.139 -18.851 1 119.64 ? N2 NAG 900 A 1 HETATM 10 O O3 NAG . . . D 2 4.005 -1.897 -17.651 1 119.73 ? O3 NAG 900 A 1 HETATM 11 O O4 NAG . . . D 2 1.555 -2.518 -19.034 1 126.37 ? O4 NAG 900 A 1 HETATM 12 O O5 NAG . . . D 2 4.044 -2.599 -21.668 1 131.47 ? O5 NAG 900 A 1 HETATM 13 O O6 NAG . . . D 2 2.096 -2.704 -23.302 1 133 ? O6 NAG 900 A 1 HETATM 14 O O7 NAG . . . D 2 5.827 -2.3 -16.835 1 115.33 ? O7 NAG 900 A 1 HETATM 15 H H1 NAG . . . D 2 5.217 -4.017 -21 1 155.19 ? H1 NAG 900 A 1 HETATM 16 H H2 NAG . . . D 2 5.484 -1.539 -19.641 1 147.79 ? H2 NAG 900 A 1 HETATM 17 H H3 NAG . . . D 2 3.854 -3.61 -18.614 1 148.16 ? H3 NAG 900 A 1 HETATM 18 H H4 NAG . . . D 2 2.844 -1.259 -19.834 1 151.38 ? H4 NAG 900 A 1 HETATM 19 H H5 NAG . . . D 2 2.786 -3.896 -20.866 1 154.96 ? H5 NAG 900 A 1 HETATM 20 H H61 NAG . . . D 2 0.925 -3.078 -21.767 1 158.08 ? H61 NAG 900 A 1 HETATM 21 H H62 NAG . . . D 2 1.485 -1.6 -21.794 1 158.08 ? H62 NAG 900 A 1 HETATM 22 H H81 NAG . . . D 2 8.531 -3.484 -17.347 1 134.2 ? H81 NAG 900 A 1 HETATM 23 H H82 NAG . . . D 2 7.577 -4.723 -17.096 1 134.2 ? H82 NAG 900 A 1 HETATM 24 H H83 NAG . . . D 2 7.743 -3.611 -15.98 1 134.2 ? H83 NAG 900 A 1 HETATM 25 H HN2 NAG . . . D 2 6.907 -3.655 -19.285 1 143.63 ? HN2 NAG 900 A 1 HETATM 26 H HO3 NAG . . . D 2 4.799 -1.831 -17.386 1 143.74 ? HO3 NAG 900 A 1 HETATM 27 H HO4 NAG . . . D 2 0.944 -2.036 -19.35 1 151.7 ? HO4 NAG 900 A 1 HETATM 28 H HO6 NAG . . . D 2 2.934 -2.703 -23.354 1 159.65 ? HO6 NAG 900 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #