data_5MRA # _model_server_result.job_id hJjLxasmE0LD2YI4O0zLJA _model_server_result.datetime_utc '2025-03-06 00:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":203}' # _entry.id 5MRA # _exptl.entry_id 5MRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MRA _cell.length_a 92.229 _cell.length_b 104.831 _cell.length_c 113.273 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K 1 1 C,D,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 52 A ASP 83 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc2 A OD2 ASP 54 A ASP 85 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc3 A O THR 58 A THR 89 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc4 A OD2 ASP 84 A ASP 115 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 B OG SER 56 B SER 87 1_555 H MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc6 B O THR 58 B THR 89 1_555 H MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc7 B OD1 ASP 82 B ASP 113 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc8 C O ALA 12 C ALA 43 1_555 L MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc9 C OD1 ASP 15 C ASP 46 1_555 L MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc10 C O GLN 17 C GLN 48 1_555 L MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc11 C OD1 ASP 52 C ASP 83 1_555 M MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc12 C O ARG 53 C ARG 84 1_555 M MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc13 C OG1 THR 58 C THR 89 1_555 M MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc14 C OE2 GLU 93 C GLU 124 1_555 N MG MG . C MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc15 L MG MG . C MG 201 1_555 Q O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc16 D OD1 ASP 54 D ASP 85 1_555 P MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc17 D O THR 58 D THR 89 1_555 P MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc18 D OD1 ASP 84 D ASP 115 1_555 O MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc19 D OE1 GLU 93 D GLU 124 1_555 O MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 155 n n S C1 DMS sing 156 n n S C2 DMS sing 157 n n C1 H11 DMS sing 158 n n C1 H12 DMS sing 159 n n C1 H13 DMS sing 160 n n C2 H21 DMS sing 161 n n C2 H22 DMS sing 162 n n C2 H23 DMS sing 163 n n # _atom_sites.entry_id 5MRA _atom_sites.fract_transf_matrix[1][1] 0.010843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 201 5 MG MG . F 2 MG A 1 202 12 MG MG . G 2 MG A 1 203 13 MG MG . H 2 MG B 1 201 3 MG MG . I 2 MG B 1 202 6 MG MG . J 3 DMS B 1 203 1 DMS DMS . K 4 DM2 B 1 204 1 DM2 DM2 . L 2 MG C 1 201 1 MG MG . M 2 MG C 1 202 4 MG MG . N 2 MG C 1 203 11 MG MG . O 2 MG D 1 201 2 MG MG . P 2 MG D 1 202 9 MG MG . Q 5 HOH C 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 3 7.523 -29.923 40.629 1 170.27 ? S DMS 203 B 1 HETATM 2 O O DMS . . . J 3 8.125 -30.623 41.797 1 163.34 ? O DMS 203 B 1 HETATM 3 C C1 DMS . . . J 3 6.681 -31.051 39.654 1 168.88 ? C1 DMS 203 B 1 HETATM 4 C C2 DMS . . . J 3 6.246 -28.884 41.121 1 151.06 ? C2 DMS 203 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #