data_5MRB
#
_model_server_result.job_id            LODs2A5fmBrC_ADChLJFog 
_model_server_result.datetime_utc      '2024-10-18 16:21:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mrb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":906}' 
#
_entry.id    5MRB 
#
_exptl.entry_id    5MRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MRB 
_cell.length_a            70.582 
_cell.length_b            111.419 
_cell.length_c            115.025 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 171 n n 
C1 C2 EDO sing 172 n n 
C1 H11 EDO sing 173 n n 
C1 H12 EDO sing 174 n n 
O1 HO1 EDO sing 175 n n 
C2 O2 EDO sing 176 n n 
C2 H21 EDO sing 177 n n 
C2 H22 EDO sing 178 n n 
O2 HO2 EDO sing 179 n n 
#
_atom_sites.entry_id                     5MRB 
_atom_sites.fract_transf_matrix[1][1]    0.014168 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008694 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 C5N A 1 901 900 C5N CO5 . 
C 3 EDO A 1 902 1 EDO EDO . 
D 3 EDO A 1 903 9 EDO EDO . 
E 3 EDO A 1 904 10 EDO EDO . 
F 3 EDO A 1 905 11 EDO EDO . 
G 3 EDO A 1 906 13 EDO EDO . 
H 3 EDO A 1 907 14 EDO EDO . 
I 3 EDO A 1 908 15 EDO EDO . 
J 3 EDO A 1 909 16 EDO EDO . 
K 3 EDO A 1 910 17 EDO EDO . 
L 3 EDO A 1 911 18 EDO EDO . 
M 3 EDO A 1 912 19 EDO EDO . 
N 3 EDO A 1 913 20 EDO EDO . 
O 4 CL A 1 914 1 CL CL . 
P 5 HOH A 1 1001 86 HOH HOH . 
P 5 HOH A 2 1002 104 HOH HOH . 
P 5 HOH A 3 1003 63 HOH HOH . 
P 5 HOH A 4 1004 56 HOH HOH . 
P 5 HOH A 5 1005 13 HOH HOH . 
P 5 HOH A 6 1006 78 HOH HOH . 
P 5 HOH A 7 1007 61 HOH HOH . 
P 5 HOH A 8 1008 57 HOH HOH . 
P 5 HOH A 9 1009 96 HOH HOH . 
P 5 HOH A 10 1010 62 HOH HOH . 
P 5 HOH A 11 1011 7 HOH HOH . 
P 5 HOH A 12 1012 30 HOH HOH . 
P 5 HOH A 13 1013 4 HOH HOH . 
P 5 HOH A 14 1014 17 HOH HOH . 
P 5 HOH A 15 1015 1 HOH HOH . 
P 5 HOH A 16 1016 80 HOH HOH . 
P 5 HOH A 17 1017 68 HOH HOH . 
P 5 HOH A 18 1018 6 HOH HOH . 
P 5 HOH A 19 1019 82 HOH HOH . 
P 5 HOH A 20 1020 95 HOH HOH . 
P 5 HOH A 21 1021 89 HOH HOH . 
P 5 HOH A 22 1022 65 HOH HOH . 
P 5 HOH A 23 1023 26 HOH HOH . 
P 5 HOH A 24 1024 72 HOH HOH . 
P 5 HOH A 25 1025 15 HOH HOH . 
P 5 HOH A 26 1026 64 HOH HOH . 
P 5 HOH A 27 1027 35 HOH HOH . 
P 5 HOH A 28 1028 97 HOH HOH . 
P 5 HOH A 29 1029 66 HOH HOH . 
P 5 HOH A 30 1030 71 HOH HOH . 
P 5 HOH A 31 1031 8 HOH HOH . 
P 5 HOH A 32 1032 83 HOH HOH . 
P 5 HOH A 33 1033 90 HOH HOH . 
P 5 HOH A 34 1034 2 HOH HOH . 
P 5 HOH A 35 1035 81 HOH HOH . 
P 5 HOH A 36 1036 67 HOH HOH . 
P 5 HOH A 37 1037 88 HOH HOH . 
P 5 HOH A 38 1038 70 HOH HOH . 
P 5 HOH A 39 1039 37 HOH HOH . 
P 5 HOH A 40 1040 42 HOH HOH . 
P 5 HOH A 41 1041 85 HOH HOH . 
P 5 HOH A 42 1042 101 HOH HOH . 
P 5 HOH A 43 1043 60 HOH HOH . 
P 5 HOH A 44 1044 31 HOH HOH . 
P 5 HOH A 45 1045 84 HOH HOH . 
P 5 HOH A 46 1046 33 HOH HOH . 
P 5 HOH A 47 1047 102 HOH HOH . 
P 5 HOH A 48 1048 22 HOH HOH . 
P 5 HOH A 49 1049 103 HOH HOH . 
P 5 HOH A 50 1050 59 HOH HOH . 
P 5 HOH A 51 1051 34 HOH HOH . 
P 5 HOH A 52 1052 94 HOH HOH . 
P 5 HOH A 53 1053 77 HOH HOH . 
P 5 HOH A 54 1054 73 HOH HOH . 
P 5 HOH A 55 1055 106 HOH HOH . 
P 5 HOH A 56 1056 53 HOH HOH . 
P 5 HOH A 57 1057 99 HOH HOH . 
P 5 HOH A 58 1058 92 HOH HOH . 
P 5 HOH A 59 1059 105 HOH HOH . 
P 5 HOH A 60 1060 74 HOH HOH . 
P 5 HOH A 61 1061 28 HOH HOH . 
P 5 HOH A 62 1062 36 HOH HOH . 
P 5 HOH A 63 1063 91 HOH HOH . 
P 5 HOH A 64 1064 87 HOH HOH . 
P 5 HOH A 65 1065 98 HOH HOH . 
P 5 HOH A 66 1066 50 HOH HOH . 
P 5 HOH A 67 1067 20 HOH HOH . 
P 5 HOH A 68 1068 93 HOH HOH . 
P 5 HOH A 69 1069 100 HOH HOH . 
P 5 HOH A 70 1070 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 2.242 1.704 -16.919 1 65.99 ? C1 EDO 906 A 1 
HETATM 2 O O1 EDO . . . G 3 1.327 0.621 -17.04 1 53.16 ? O1 EDO 906 A 1 
HETATM 3 C C2 EDO . . . G 3 3.027 1.621 -15.624 1 70.81 ? C2 EDO 906 A 1 
HETATM 4 O O2 EDO . . . G 3 2.135 1.938 -14.549 1 73.42 ? O2 EDO 906 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#