data_5MRB # _model_server_result.job_id Whb7DcgFs4t_N2eKlKs2lw _model_server_result.datetime_utc '2024-11-24 04:56:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":906}' # _entry.id 5MRB # _exptl.entry_id 5MRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MRB _cell.length_a 70.582 _cell.length_b 111.419 _cell.length_c 115.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 171 n n C1 C2 EDO sing 172 n n C1 H11 EDO sing 173 n n C1 H12 EDO sing 174 n n O1 HO1 EDO sing 175 n n C2 O2 EDO sing 176 n n C2 H21 EDO sing 177 n n C2 H22 EDO sing 178 n n O2 HO2 EDO sing 179 n n # _atom_sites.entry_id 5MRB _atom_sites.fract_transf_matrix[1][1] 0.014168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5N A 1 901 900 C5N CO5 . C 3 EDO A 1 902 1 EDO EDO . D 3 EDO A 1 903 9 EDO EDO . E 3 EDO A 1 904 10 EDO EDO . F 3 EDO A 1 905 11 EDO EDO . G 3 EDO A 1 906 13 EDO EDO . H 3 EDO A 1 907 14 EDO EDO . I 3 EDO A 1 908 15 EDO EDO . J 3 EDO A 1 909 16 EDO EDO . K 3 EDO A 1 910 17 EDO EDO . L 3 EDO A 1 911 18 EDO EDO . M 3 EDO A 1 912 19 EDO EDO . N 3 EDO A 1 913 20 EDO EDO . O 4 CL A 1 914 1 CL CL . P 5 HOH A 1 1001 86 HOH HOH . P 5 HOH A 2 1002 104 HOH HOH . P 5 HOH A 3 1003 63 HOH HOH . P 5 HOH A 4 1004 56 HOH HOH . P 5 HOH A 5 1005 13 HOH HOH . P 5 HOH A 6 1006 78 HOH HOH . P 5 HOH A 7 1007 61 HOH HOH . P 5 HOH A 8 1008 57 HOH HOH . P 5 HOH A 9 1009 96 HOH HOH . P 5 HOH A 10 1010 62 HOH HOH . P 5 HOH A 11 1011 7 HOH HOH . P 5 HOH A 12 1012 30 HOH HOH . P 5 HOH A 13 1013 4 HOH HOH . P 5 HOH A 14 1014 17 HOH HOH . P 5 HOH A 15 1015 1 HOH HOH . P 5 HOH A 16 1016 80 HOH HOH . P 5 HOH A 17 1017 68 HOH HOH . P 5 HOH A 18 1018 6 HOH HOH . P 5 HOH A 19 1019 82 HOH HOH . P 5 HOH A 20 1020 95 HOH HOH . P 5 HOH A 21 1021 89 HOH HOH . P 5 HOH A 22 1022 65 HOH HOH . P 5 HOH A 23 1023 26 HOH HOH . P 5 HOH A 24 1024 72 HOH HOH . P 5 HOH A 25 1025 15 HOH HOH . P 5 HOH A 26 1026 64 HOH HOH . P 5 HOH A 27 1027 35 HOH HOH . P 5 HOH A 28 1028 97 HOH HOH . P 5 HOH A 29 1029 66 HOH HOH . P 5 HOH A 30 1030 71 HOH HOH . P 5 HOH A 31 1031 8 HOH HOH . P 5 HOH A 32 1032 83 HOH HOH . P 5 HOH A 33 1033 90 HOH HOH . P 5 HOH A 34 1034 2 HOH HOH . P 5 HOH A 35 1035 81 HOH HOH . P 5 HOH A 36 1036 67 HOH HOH . P 5 HOH A 37 1037 88 HOH HOH . P 5 HOH A 38 1038 70 HOH HOH . P 5 HOH A 39 1039 37 HOH HOH . P 5 HOH A 40 1040 42 HOH HOH . P 5 HOH A 41 1041 85 HOH HOH . P 5 HOH A 42 1042 101 HOH HOH . P 5 HOH A 43 1043 60 HOH HOH . P 5 HOH A 44 1044 31 HOH HOH . P 5 HOH A 45 1045 84 HOH HOH . P 5 HOH A 46 1046 33 HOH HOH . P 5 HOH A 47 1047 102 HOH HOH . P 5 HOH A 48 1048 22 HOH HOH . P 5 HOH A 49 1049 103 HOH HOH . P 5 HOH A 50 1050 59 HOH HOH . P 5 HOH A 51 1051 34 HOH HOH . P 5 HOH A 52 1052 94 HOH HOH . P 5 HOH A 53 1053 77 HOH HOH . P 5 HOH A 54 1054 73 HOH HOH . P 5 HOH A 55 1055 106 HOH HOH . P 5 HOH A 56 1056 53 HOH HOH . P 5 HOH A 57 1057 99 HOH HOH . P 5 HOH A 58 1058 92 HOH HOH . P 5 HOH A 59 1059 105 HOH HOH . P 5 HOH A 60 1060 74 HOH HOH . P 5 HOH A 61 1061 28 HOH HOH . P 5 HOH A 62 1062 36 HOH HOH . P 5 HOH A 63 1063 91 HOH HOH . P 5 HOH A 64 1064 87 HOH HOH . P 5 HOH A 65 1065 98 HOH HOH . P 5 HOH A 66 1066 50 HOH HOH . P 5 HOH A 67 1067 20 HOH HOH . P 5 HOH A 68 1068 93 HOH HOH . P 5 HOH A 69 1069 100 HOH HOH . P 5 HOH A 70 1070 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 2.242 1.704 -16.919 1 65.99 ? C1 EDO 906 A 1 HETATM 2 O O1 EDO . . . G 3 1.327 0.621 -17.04 1 53.16 ? O1 EDO 906 A 1 HETATM 3 C C2 EDO . . . G 3 3.027 1.621 -15.624 1 70.81 ? C2 EDO 906 A 1 HETATM 4 O O2 EDO . . . G 3 2.135 1.938 -14.549 1 73.42 ? O2 EDO 906 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #