data_5MSP
#
_model_server_result.job_id            YcSmReM-8CtXE4EJGzAf8Q 
_model_server_result.datetime_utc      '2024-11-14 16:14:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5msp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    5MSP 
#
_exptl.entry_id    5MSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MSP 
_cell.length_a            135.37 
_cell.length_b            137.68 
_cell.length_c            202.08 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     5MSP 
_atom_sites.fract_transf_matrix[1][1]    0.007387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 1201 1 NAP NAP . 
C 3 HOH A 1 1301 52 HOH HOH . 
C 3 HOH A 2 1302 18 HOH HOH . 
C 3 HOH A 3 1303 59 HOH HOH . 
C 3 HOH A 4 1304 30 HOH HOH . 
C 3 HOH A 5 1305 55 HOH HOH . 
C 3 HOH A 6 1306 21 HOH HOH . 
C 3 HOH A 7 1307 47 HOH HOH . 
C 3 HOH A 8 1308 39 HOH HOH . 
C 3 HOH A 9 1309 14 HOH HOH . 
C 3 HOH A 10 1310 17 HOH HOH . 
C 3 HOH A 11 1311 3 HOH HOH . 
C 3 HOH A 12 1312 44 HOH HOH . 
C 3 HOH A 13 1313 10 HOH HOH . 
C 3 HOH A 14 1314 27 HOH HOH . 
C 3 HOH A 15 1315 25 HOH HOH . 
C 3 HOH A 16 1316 19 HOH HOH . 
C 3 HOH A 17 1317 43 HOH HOH . 
C 3 HOH A 18 1318 9 HOH HOH . 
C 3 HOH A 19 1319 68 HOH HOH . 
C 3 HOH A 20 1320 80 HOH HOH . 
C 3 HOH A 21 1321 12 HOH HOH . 
C 3 HOH A 22 1322 60 HOH HOH . 
C 3 HOH A 23 1323 5 HOH HOH . 
C 3 HOH A 24 1324 16 HOH HOH . 
C 3 HOH A 25 1325 61 HOH HOH . 
C 3 HOH A 26 1326 66 HOH HOH . 
C 3 HOH A 27 1327 70 HOH HOH . 
C 3 HOH A 28 1328 63 HOH HOH . 
C 3 HOH A 29 1329 24 HOH HOH . 
C 3 HOH A 30 1330 48 HOH HOH . 
C 3 HOH A 31 1331 42 HOH HOH . 
C 3 HOH A 32 1332 34 HOH HOH . 
C 3 HOH A 33 1333 54 HOH HOH . 
C 3 HOH A 34 1334 22 HOH HOH . 
C 3 HOH A 35 1335 58 HOH HOH . 
C 3 HOH A 36 1336 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 53.831 46.424 75.538 1 48.49 ? PA NAP 1201 A 1 
HETATM 2 O O1A NAP . . . B 2 52.47 46.247 76.14 1 41.75 ? O1A NAP 1201 A 1 
HETATM 3 O O2A NAP . . . B 2 54.457 47.771 75.703 1 54.68 ? O2A NAP 1201 A 1 
HETATM 4 O O5B NAP . . . B 2 54.814 45.282 76.102 1 47.58 ? O5B NAP 1201 A 1 
HETATM 5 C C5B NAP . . . B 2 56.216 45.409 76.02 1 54.72 ? C5B NAP 1201 A 1 
HETATM 6 C C4B NAP . . . B 2 56.928 44.289 76.786 1 57.26 ? C4B NAP 1201 A 1 
HETATM 7 O O4B NAP . . . B 2 58.356 44.292 76.612 1 52.37 ? O4B NAP 1201 A 1 
HETATM 8 C C3B NAP . . . B 2 56.741 44.362 78.284 1 57.66 ? C3B NAP 1201 A 1 
HETATM 9 O O3B NAP . . . B 2 56.694 43.013 78.741 1 52.89 ? O3B NAP 1201 A 1 
HETATM 10 C C2B NAP . . . B 2 58.001 45.061 78.757 1 59.42 ? C2B NAP 1201 A 1 
HETATM 11 O O2B NAP . . . B 2 58.427 44.808 80.097 1 61.21 ? O2B NAP 1201 A 1 
HETATM 12 C C1B NAP . . . B 2 58.98 44.382 77.876 1 55.7 ? C1B NAP 1201 A 1 
HETATM 13 N N9A NAP . . . B 2 60.242 45.083 77.734 1 56.21 ? N9A NAP 1201 A 1 
HETATM 14 C C8A NAP . . . B 2 60.441 46.346 77.339 1 53.35 ? C8A NAP 1201 A 1 
HETATM 15 N N7A NAP . . . B 2 61.745 46.565 77.302 1 47.04 ? N7A NAP 1201 A 1 
HETATM 16 C C5A NAP . . . B 2 62.367 45.455 77.684 1 45 ? C5A NAP 1201 A 1 
HETATM 17 C C6A NAP . . . B 2 63.762 45.015 77.894 1 50.11 ? C6A NAP 1201 A 1 
HETATM 18 N N6A NAP . . . B 2 64.797 45.85 77.659 1 56.19 ? N6A NAP 1201 A 1 
HETATM 19 N N1A NAP . . . B 2 63.975 43.745 78.318 1 48.43 ? N1A NAP 1201 A 1 
HETATM 20 C C2A NAP . . . B 2 62.956 42.918 78.595 1 51.33 ? C2A NAP 1201 A 1 
HETATM 21 N N3A NAP . . . B 2 61.666 43.261 78.432 1 49.33 ? N3A NAP 1201 A 1 
HETATM 22 C C4A NAP . . . B 2 61.357 44.479 77.969 1 47.42 ? C4A NAP 1201 A 1 
HETATM 23 O O3 NAP . . . B 2 53.815 46.121 74.003 1 51.01 ? O3 NAP 1201 A 1 
HETATM 24 P PN NAP . . . B 2 52.732 45.123 73.335 1 55.5 ? PN NAP 1201 A 1 
HETATM 25 O O1N NAP . . . B 2 51.503 45.948 73.136 1 57.03 ? O1N NAP 1201 A 1 
HETATM 26 O O2N NAP . . . B 2 52.644 43.781 73.97 1 39.37 ? O2N NAP 1201 A 1 
HETATM 27 O O5D NAP . . . B 2 53.463 45.024 71.96 1 52.47 ? O5D NAP 1201 A 1 
HETATM 28 C C5D NAP . . . B 2 53.905 43.794 71.478 1 51.68 ? C5D NAP 1201 A 1 
HETATM 29 C C4D NAP . . . B 2 54.599 43.972 70.172 1 52.89 ? C4D NAP 1201 A 1 
HETATM 30 O O4D NAP . . . B 2 53.78 44.525 69.142 1 58.55 ? O4D NAP 1201 A 1 
HETATM 31 C C3D NAP . . . B 2 55.789 44.872 70.348 1 51.63 ? C3D NAP 1201 A 1 
HETATM 32 O O3D NAP . . . B 2 57 44.266 70.027 1 60.28 ? O3D NAP 1201 A 1 
HETATM 33 C C2D NAP . . . B 2 55.555 45.913 69.327 1 60.31 ? C2D NAP 1201 A 1 
HETATM 34 O O2D NAP . . . B 2 56.798 46.436 68.895 1 62.13 ? O2D NAP 1201 A 1 
HETATM 35 C C1D NAP . . . B 2 54.698 45.211 68.312 1 53.76 ? C1D NAP 1201 A 1 
HETATM 36 N N1N NAP . . . B 2 53.985 46.213 67.603 1 55.9 ? N1N NAP 1201 A 1 
HETATM 37 P P2B NAP . . . B 2 58.42 46.026 81.117 1 59.39 ? P2B NAP 1201 A 1 
HETATM 38 O O1X NAP . . . B 2 58.64 47.241 80.28 1 56.67 ? O1X NAP 1201 A 1 
HETATM 39 O O2X NAP . . . B 2 57.069 45.988 81.642 1 43.62 ? O2X NAP 1201 A 1 
HETATM 40 O O3X NAP . . . B 2 59.6 45.695 81.969 1 53.65 ? O3X NAP 1201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#