data_5MSW # _model_server_result.job_id dVLkBms0mFyMNP0H7h12Cw _model_server_result.datetime_utc '2024-11-16 08:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5msw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5MSW # _exptl.entry_id 5MSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.8 _cell.angle_gamma 90 _cell.entry_id 5MSW _cell.length_a 131.42 _cell.length_b 65.33 _cell.length_c 101.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5MSW _atom_sites.fract_transf_matrix[1][1] 0.007609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 1201 1 AMP AMP . C 3 HOH A 1 1301 44 HOH HOH . C 3 HOH A 2 1302 27 HOH HOH . C 3 HOH A 3 1303 63 HOH HOH . C 3 HOH A 4 1304 133 HOH HOH . C 3 HOH A 5 1305 41 HOH HOH . C 3 HOH A 6 1306 2 HOH HOH . C 3 HOH A 7 1307 1 HOH HOH . C 3 HOH A 8 1308 218 HOH HOH . C 3 HOH A 9 1309 134 HOH HOH . C 3 HOH A 10 1310 4 HOH HOH . C 3 HOH A 11 1311 104 HOH HOH . C 3 HOH A 12 1312 3 HOH HOH . C 3 HOH A 13 1313 23 HOH HOH . C 3 HOH A 14 1314 30 HOH HOH . C 3 HOH A 15 1315 52 HOH HOH . C 3 HOH A 16 1316 15 HOH HOH . C 3 HOH A 17 1317 189 HOH HOH . C 3 HOH A 18 1318 110 HOH HOH . C 3 HOH A 19 1319 107 HOH HOH . C 3 HOH A 20 1320 35 HOH HOH . C 3 HOH A 21 1321 79 HOH HOH . C 3 HOH A 22 1322 9 HOH HOH . C 3 HOH A 23 1323 21 HOH HOH . C 3 HOH A 24 1324 16 HOH HOH . C 3 HOH A 25 1325 71 HOH HOH . C 3 HOH A 26 1326 8 HOH HOH . C 3 HOH A 27 1327 60 HOH HOH . C 3 HOH A 28 1328 13 HOH HOH . C 3 HOH A 29 1329 74 HOH HOH . C 3 HOH A 30 1330 22 HOH HOH . C 3 HOH A 31 1331 5 HOH HOH . C 3 HOH A 32 1332 40 HOH HOH . C 3 HOH A 33 1333 11 HOH HOH . C 3 HOH A 34 1334 190 HOH HOH . C 3 HOH A 35 1335 51 HOH HOH . C 3 HOH A 36 1336 45 HOH HOH . C 3 HOH A 37 1337 29 HOH HOH . C 3 HOH A 38 1338 125 HOH HOH . C 3 HOH A 39 1339 61 HOH HOH . C 3 HOH A 40 1340 119 HOH HOH . C 3 HOH A 41 1341 6 HOH HOH . C 3 HOH A 42 1342 10 HOH HOH . C 3 HOH A 43 1343 77 HOH HOH . C 3 HOH A 44 1344 46 HOH HOH . C 3 HOH A 45 1345 57 HOH HOH . C 3 HOH A 46 1346 50 HOH HOH . C 3 HOH A 47 1347 54 HOH HOH . C 3 HOH A 48 1348 112 HOH HOH . C 3 HOH A 49 1349 34 HOH HOH . C 3 HOH A 50 1350 12 HOH HOH . C 3 HOH A 51 1351 158 HOH HOH . C 3 HOH A 52 1352 67 HOH HOH . C 3 HOH A 53 1353 115 HOH HOH . C 3 HOH A 54 1354 100 HOH HOH . C 3 HOH A 55 1355 111 HOH HOH . C 3 HOH A 56 1356 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 151.139 58.088 29.927 1 55.74 ? P AMP 1201 A 1 HETATM 2 O O1P AMP . . . B 2 151.562 57.205 28.768 1 55.02 ? O1P AMP 1201 A 1 HETATM 3 O O2P AMP . . . B 2 150.075 57.418 30.786 1 58.81 ? O2P AMP 1201 A 1 HETATM 4 O O3P AMP . . . B 2 150.819 59.545 29.64 1 59.05 ? O3P AMP 1201 A 1 HETATM 5 O O5' AMP . . . B 2 152.472 58.225 30.785 1 45.15 ? O5' AMP 1201 A 1 HETATM 6 C C5' AMP . . . B 2 153.75 58.273 30.162 1 42.41 ? C5' AMP 1201 A 1 HETATM 7 C C4' AMP . . . B 2 154.822 58.243 31.236 1 42.9 ? C4' AMP 1201 A 1 HETATM 8 O O4' AMP . . . B 2 155.276 56.892 31.406 1 40.74 ? O4' AMP 1201 A 1 HETATM 9 C C3' AMP . . . B 2 156.092 59.05 30.926 1 41.02 ? C3' AMP 1201 A 1 HETATM 10 O O3' AMP . . . B 2 155.972 60.438 31.188 1 41.19 ? O3' AMP 1201 A 1 HETATM 11 C C2' AMP . . . B 2 157.09 58.364 31.843 1 42.49 ? C2' AMP 1201 A 1 HETATM 12 O O2' AMP . . . B 2 157.008 58.773 33.216 1 40.65 ? O2' AMP 1201 A 1 HETATM 13 C C1' AMP . . . B 2 156.683 56.911 31.699 1 39.88 ? C1' AMP 1201 A 1 HETATM 14 N N9 AMP . . . B 2 157.379 56.247 30.579 1 35.7 ? N9 AMP 1201 A 1 HETATM 15 C C8 AMP . . . B 2 156.887 56.152 29.332 1 29.69 ? C8 AMP 1201 A 1 HETATM 16 N N7 AMP . . . B 2 157.736 55.492 28.55 1 29.06 ? N7 AMP 1201 A 1 HETATM 17 C C5 AMP . . . B 2 158.794 55.127 29.29 1 30.92 ? C5 AMP 1201 A 1 HETATM 18 C C6 AMP . . . B 2 160.043 54.366 29.056 1 29.37 ? C6 AMP 1201 A 1 HETATM 19 N N6 AMP . . . B 2 160.31 53.86 27.84 1 29.28 ? N6 AMP 1201 A 1 HETATM 20 N N1 AMP . . . B 2 160.898 54.242 30.103 1 33.65 ? N1 AMP 1201 A 1 HETATM 21 C C2 AMP . . . B 2 160.637 54.773 31.33 1 31.75 ? C2 AMP 1201 A 1 HETATM 22 N N3 AMP . . . B 2 159.488 55.434 31.608 1 31.92 ? N3 AMP 1201 A 1 HETATM 23 C C4 AMP . . . B 2 158.555 55.635 30.651 1 30.73 ? C4 AMP 1201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #