data_5MTF # _model_server_result.job_id YfPkDXLs6b9_3VsGlj3Ddw _model_server_result.datetime_utc '2025-01-10 13:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 5MTF # _exptl.entry_id 5MTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MTF _cell.length_a 111.365 _cell.length_b 111.365 _cell.length_c 124.539 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 115 A SER 201 1_555 B C7 W6Q 6 C W6Q 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 B C ACE 1 C ACE 7 1_555 B N ARG 2 C ARG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale3 B C HIS 5 C HIS 11 1_555 B N1 W6Q 6 C W6Q 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 76 n n C1 O1 BNG sing 77 n n C1 O5 BNG sing 78 n n C1 H1 BNG sing 79 n n C2 C3 BNG sing 80 n n C2 O2 BNG sing 81 n n C2 H2 BNG sing 82 n n C3 C4 BNG sing 83 n n C3 O3 BNG sing 84 n n C3 H3 BNG sing 85 n n C4 C5 BNG sing 86 n n C4 O4 BNG sing 87 n n C4 H4 BNG sing 88 n n C5 C6 BNG sing 89 n n C5 O5 BNG sing 90 n n C5 H5 BNG sing 91 n n C6 O6 BNG sing 92 n n C6 H61 BNG sing 93 n n C6 H62 BNG sing 94 n n C1' C2' BNG sing 95 n n C1' O1 BNG sing 96 n n C1' "H1'1" BNG sing 97 n n C1' "H1'2" BNG sing 98 n n C2' C3' BNG sing 99 n n C2' "H2'1" BNG sing 100 n n C2' "H2'2" BNG sing 101 n n C3' C4' BNG sing 102 n n C3' "H3'1" BNG sing 103 n n C3' "H3'2" BNG sing 104 n n C4' C5' BNG sing 105 n n C4' "H4'1" BNG sing 106 n n C4' "H4'2" BNG sing 107 n n C5' C6' BNG sing 108 n n C5' "H5'1" BNG sing 109 n n C5' "H5'2" BNG sing 110 n n C6' C7' BNG sing 111 n n C6' "H6'1" BNG sing 112 n n C6' "H6'2" BNG sing 113 n n C7' C8' BNG sing 114 n n C7' "H7'1" BNG sing 115 n n C7' "H7'2" BNG sing 116 n n C8' C9' BNG sing 117 n n C8' "H8'1" BNG sing 118 n n C8' "H8'2" BNG sing 119 n n C9' "H9'1" BNG sing 120 n n C9' "H9'2" BNG sing 121 n n C9' "H9'3" BNG sing 122 n n O2 HO2 BNG sing 123 n n O3 HO3 BNG sing 124 n n O4 HO4 BNG sing 125 n n O6 HO6 BNG sing 126 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5MTF _atom_sites.fract_transf_matrix[1][1] 0.008979 _atom_sites.fract_transf_matrix[1][2] 0.005184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 301 302 CL CL . D 3 CL A 1 302 303 CL CL . E 4 BNG A 1 303 304 BNG BNG . F 4 BNG A 1 304 305 BNG BNG . G 4 BNG A 1 305 306 BNG BNG . H 4 BNG A 1 306 307 BNG BNG . I 4 BNG A 1 307 308 BNG BNG . J 5 HOH A 1 401 401 HOH HOH . J 5 HOH A 2 402 402 HOH HOH . J 5 HOH A 3 403 403 HOH HOH . J 5 HOH A 4 404 404 HOH HOH . J 5 HOH A 5 405 405 HOH HOH . J 5 HOH A 6 406 406 HOH HOH . J 5 HOH A 7 407 407 HOH HOH . J 5 HOH A 8 408 408 HOH HOH . J 5 HOH A 9 409 409 HOH HOH . J 5 HOH A 10 410 410 HOH HOH . J 5 HOH A 11 411 411 HOH HOH . J 5 HOH A 12 412 412 HOH HOH . J 5 HOH A 13 413 413 HOH HOH . J 5 HOH A 14 414 414 HOH HOH . J 5 HOH A 15 415 415 HOH HOH . J 5 HOH A 16 416 416 HOH HOH . J 5 HOH A 17 417 417 HOH HOH . J 5 HOH A 18 418 418 HOH HOH . J 5 HOH A 19 419 419 HOH HOH . J 5 HOH A 20 420 420 HOH HOH . J 5 HOH A 21 421 421 HOH HOH . J 5 HOH A 22 422 422 HOH HOH . J 5 HOH A 23 423 423 HOH HOH . J 5 HOH A 24 424 424 HOH HOH . J 5 HOH A 25 425 425 HOH HOH . J 5 HOH A 26 426 426 HOH HOH . J 5 HOH A 27 427 427 HOH HOH . J 5 HOH A 28 428 428 HOH HOH . J 5 HOH A 29 429 429 HOH HOH . J 5 HOH A 30 430 430 HOH HOH . J 5 HOH A 31 431 431 HOH HOH . J 5 HOH A 32 432 432 HOH HOH . J 5 HOH A 33 433 433 HOH HOH . J 5 HOH A 34 434 434 HOH HOH . J 5 HOH A 35 435 435 HOH HOH . J 5 HOH A 36 436 436 HOH HOH . J 5 HOH A 37 437 437 HOH HOH . J 5 HOH A 38 438 438 HOH HOH . J 5 HOH A 39 439 439 HOH HOH . J 5 HOH A 40 440 440 HOH HOH . J 5 HOH A 41 441 441 HOH HOH . J 5 HOH A 42 442 442 HOH HOH . J 5 HOH A 43 443 443 HOH HOH . J 5 HOH A 44 444 444 HOH HOH . J 5 HOH A 45 445 445 HOH HOH . J 5 HOH A 46 446 446 HOH HOH . J 5 HOH A 47 447 447 HOH HOH . J 5 HOH A 48 448 448 HOH HOH . J 5 HOH A 49 449 449 HOH HOH . J 5 HOH A 50 450 450 HOH HOH . J 5 HOH A 51 451 451 HOH HOH . J 5 HOH A 52 452 452 HOH HOH . J 5 HOH A 53 453 453 HOH HOH . J 5 HOH A 54 454 454 HOH HOH . J 5 HOH A 55 455 455 HOH HOH . J 5 HOH A 56 456 456 HOH HOH . J 5 HOH A 57 457 457 HOH HOH . J 5 HOH A 58 458 458 HOH HOH . J 5 HOH A 59 459 459 HOH HOH . J 5 HOH A 60 460 460 HOH HOH . J 5 HOH A 61 461 461 HOH HOH . J 5 HOH A 62 462 462 HOH HOH . K 5 HOH C 1 101 101 HOH HOH . K 5 HOH C 2 102 102 HOH HOH . K 5 HOH C 3 103 103 HOH HOH . K 5 HOH C 4 104 104 HOH HOH . K 5 HOH C 5 105 105 HOH HOH . K 5 HOH C 6 106 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . I 4 -44.81 -5.784 -13.542 1 82.89 ? C1 BNG 307 A 1 HETATM 2 C C2 BNG . . . I 4 -44.81 -4.306 -13.141 1 86.45 ? C2 BNG 307 A 1 HETATM 3 C C3 BNG . . . I 4 -44.65 -4.181 -11.632 1 88.64 ? C3 BNG 307 A 1 HETATM 4 C C4 BNG . . . I 4 -45.618 -5.072 -10.851 1 88.3 ? C4 BNG 307 A 1 HETATM 5 C C5 BNG . . . I 4 -45.878 -6.444 -11.501 1 86.56 ? C5 BNG 307 A 1 HETATM 6 C C6 BNG . . . I 4 -47.147 -7.101 -10.95 1 82.93 ? C6 BNG 307 A 1 HETATM 7 C C1' BNG . . . I 4 -43.766 -6.667 -15.545 1 75.14 ? C1' BNG 307 A 1 HETATM 8 O O1 BNG . . . I 4 -44.853 -5.934 -14.966 1 77.38 ? O1 BNG 307 A 1 HETATM 9 O O2 BNG . . . I 4 -43.743 -3.586 -13.77 1 87.26 ? O2 BNG 307 A 1 HETATM 10 O O3 BNG . . . I 4 -44.863 -2.813 -11.268 1 97.87 ? O3 BNG 307 A 1 HETATM 11 O O4 BNG . . . I 4 -45.059 -5.284 -9.545 1 87.7 ? O4 BNG 307 A 1 HETATM 12 O O5 BNG . . . I 4 -45.958 -6.388 -12.937 1 83.91 ? O5 BNG 307 A 1 HETATM 13 O O6 BNG . . . I 4 -46.764 -8.3 -10.266 1 74.54 ? O6 BNG 307 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #