data_5MTX # _model_server_result.job_id c6Fp21H2-TxOrRUZhqZX_g _model_server_result.datetime_utc '2024-10-11 01:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mtx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MTX # _exptl.entry_id 5MTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MTX _cell.length_a 67.65 _cell.length_b 70.21 _cell.length_c 74.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5MTX _atom_sites.fract_transf_matrix[1][1] 0.014782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FJI A 1 401 1 FJI DRG . C 3 BOG A 1 402 1 BOG BOG . D 3 BOG A 1 403 2 BOG BOG . E 4 HOH A 1 501 16 HOH HOH . E 4 HOH A 2 502 103 HOH HOH . E 4 HOH A 3 503 124 HOH HOH . E 4 HOH A 4 504 12 HOH HOH . E 4 HOH A 5 505 18 HOH HOH . E 4 HOH A 6 506 38 HOH HOH . E 4 HOH A 7 507 145 HOH HOH . E 4 HOH A 8 508 131 HOH HOH . E 4 HOH A 9 509 70 HOH HOH . E 4 HOH A 10 510 125 HOH HOH . E 4 HOH A 11 511 132 HOH HOH . E 4 HOH A 12 512 157 HOH HOH . E 4 HOH A 13 513 165 HOH HOH . E 4 HOH A 14 514 158 HOH HOH . E 4 HOH A 15 515 110 HOH HOH . E 4 HOH A 16 516 15 HOH HOH . E 4 HOH A 17 517 47 HOH HOH . E 4 HOH A 18 518 79 HOH HOH . E 4 HOH A 19 519 55 HOH HOH . E 4 HOH A 20 520 164 HOH HOH . E 4 HOH A 21 521 87 HOH HOH . E 4 HOH A 22 522 86 HOH HOH . E 4 HOH A 23 523 136 HOH HOH . E 4 HOH A 24 524 166 HOH HOH . E 4 HOH A 25 525 53 HOH HOH . E 4 HOH A 26 526 30 HOH HOH . E 4 HOH A 27 527 59 HOH HOH . E 4 HOH A 28 528 24 HOH HOH . E 4 HOH A 29 529 120 HOH HOH . E 4 HOH A 30 530 63 HOH HOH . E 4 HOH A 31 531 172 HOH HOH . E 4 HOH A 32 532 52 HOH HOH . E 4 HOH A 33 533 40 HOH HOH . E 4 HOH A 34 534 149 HOH HOH . E 4 HOH A 35 535 127 HOH HOH . E 4 HOH A 36 536 148 HOH HOH . E 4 HOH A 37 537 45 HOH HOH . E 4 HOH A 38 538 88 HOH HOH . E 4 HOH A 39 539 146 HOH HOH . E 4 HOH A 40 540 68 HOH HOH . E 4 HOH A 41 541 175 HOH HOH . E 4 HOH A 42 542 147 HOH HOH . E 4 HOH A 43 543 98 HOH HOH . E 4 HOH A 44 544 174 HOH HOH . E 4 HOH A 45 545 48 HOH HOH . E 4 HOH A 46 546 116 HOH HOH . E 4 HOH A 47 547 173 HOH HOH . E 4 HOH A 48 548 56 HOH HOH . E 4 HOH A 49 549 23 HOH HOH . E 4 HOH A 50 550 155 HOH HOH . E 4 HOH A 51 551 128 HOH HOH . E 4 HOH A 52 552 144 HOH HOH . E 4 HOH A 53 553 152 HOH HOH . E 4 HOH A 54 554 74 HOH HOH . E 4 HOH A 55 555 135 HOH HOH . E 4 HOH A 56 556 43 HOH HOH . E 4 HOH A 57 557 39 HOH HOH . E 4 HOH A 58 558 139 HOH HOH . E 4 HOH A 59 559 169 HOH HOH . E 4 HOH A 60 560 77 HOH HOH . E 4 HOH A 61 561 156 HOH HOH . E 4 HOH A 62 562 22 HOH HOH . E 4 HOH A 63 563 9 HOH HOH . E 4 HOH A 64 564 73 HOH HOH . E 4 HOH A 65 565 62 HOH HOH . E 4 HOH A 66 566 121 HOH HOH . E 4 HOH A 67 567 33 HOH HOH . E 4 HOH A 68 568 167 HOH HOH . E 4 HOH A 69 569 54 HOH HOH . E 4 HOH A 70 570 31 HOH HOH . E 4 HOH A 71 571 6 HOH HOH . E 4 HOH A 72 572 180 HOH HOH . E 4 HOH A 73 573 17 HOH HOH . E 4 HOH A 74 574 176 HOH HOH . E 4 HOH A 75 575 67 HOH HOH . E 4 HOH A 76 576 7 HOH HOH . E 4 HOH A 77 577 58 HOH HOH . E 4 HOH A 78 578 134 HOH HOH . E 4 HOH A 79 579 117 HOH HOH . E 4 HOH A 80 580 183 HOH HOH . E 4 HOH A 81 581 142 HOH HOH . E 4 HOH A 82 582 133 HOH HOH . E 4 HOH A 83 583 75 HOH HOH . E 4 HOH A 84 584 46 HOH HOH . E 4 HOH A 85 585 37 HOH HOH . E 4 HOH A 86 586 28 HOH HOH . E 4 HOH A 87 587 171 HOH HOH . E 4 HOH A 88 588 21 HOH HOH . E 4 HOH A 89 589 42 HOH HOH . E 4 HOH A 90 590 19 HOH HOH . E 4 HOH A 91 591 182 HOH HOH . E 4 HOH A 92 592 102 HOH HOH . E 4 HOH A 93 593 41 HOH HOH . E 4 HOH A 94 594 126 HOH HOH . E 4 HOH A 95 595 8 HOH HOH . E 4 HOH A 96 596 27 HOH HOH . E 4 HOH A 97 597 51 HOH HOH . E 4 HOH A 98 598 179 HOH HOH . E 4 HOH A 99 599 162 HOH HOH . E 4 HOH A 100 600 89 HOH HOH . E 4 HOH A 101 601 49 HOH HOH . E 4 HOH A 102 602 2 HOH HOH . E 4 HOH A 103 603 71 HOH HOH . E 4 HOH A 104 604 14 HOH HOH . E 4 HOH A 105 605 80 HOH HOH . E 4 HOH A 106 606 97 HOH HOH . E 4 HOH A 107 607 154 HOH HOH . E 4 HOH A 108 608 177 HOH HOH . E 4 HOH A 109 609 137 HOH HOH . E 4 HOH A 110 610 163 HOH HOH . E 4 HOH A 111 611 108 HOH HOH . E 4 HOH A 112 612 69 HOH HOH . E 4 HOH A 113 613 13 HOH HOH . E 4 HOH A 114 614 82 HOH HOH . E 4 HOH A 115 615 85 HOH HOH . E 4 HOH A 116 616 130 HOH HOH . E 4 HOH A 117 617 44 HOH HOH . E 4 HOH A 118 618 129 HOH HOH . E 4 HOH A 119 619 150 HOH HOH . E 4 HOH A 120 620 114 HOH HOH . E 4 HOH A 121 621 66 HOH HOH . E 4 HOH A 122 622 76 HOH HOH . E 4 HOH A 123 623 140 HOH HOH . E 4 HOH A 124 624 151 HOH HOH . E 4 HOH A 125 625 181 HOH HOH . E 4 HOH A 126 626 178 HOH HOH . E 4 HOH A 127 627 153 HOH HOH . E 4 HOH A 128 628 113 HOH HOH . E 4 HOH A 129 629 65 HOH HOH . E 4 HOH A 130 630 105 HOH HOH . E 4 HOH A 131 631 50 HOH HOH . E 4 HOH A 132 632 138 HOH HOH . E 4 HOH A 133 633 72 HOH HOH . E 4 HOH A 134 634 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 -4.922 -9.838 -6.905 1 29.61 ? C1 BOG 402 A 1 HETATM 2 O O1 BOG . . . C 3 -5.403 -8.845 -7.747 1 27.83 ? O1 BOG 402 A 1 HETATM 3 C C2 BOG . . . C 3 -5.66 -11.159 -7.028 1 29.67 ? C2 BOG 402 A 1 HETATM 4 O O2 BOG . . . C 3 -7.028 -10.942 -6.829 1 29.92 ? O2 BOG 402 A 1 HETATM 5 C C3 BOG . . . C 3 -5.16 -12.097 -5.992 1 31.88 ? C3 BOG 402 A 1 HETATM 6 O O3 BOG . . . C 3 -5.755 -13.398 -6.263 1 30.62 ? O3 BOG 402 A 1 HETATM 7 C C4 BOG . . . C 3 -3.728 -12.299 -6.257 1 32.3 ? C4 BOG 402 A 1 HETATM 8 O O4 BOG . . . C 3 -3.215 -13.166 -5.3 1 32.19 ? O4 BOG 402 A 1 HETATM 9 C C5 BOG . . . C 3 -2.975 -11.061 -6.172 1 31.21 ? C5 BOG 402 A 1 HETATM 10 O O5 BOG . . . C 3 -3.552 -10.025 -7.003 1 29.43 ? O5 BOG 402 A 1 HETATM 11 C C6 BOG . . . C 3 -1.649 -11.456 -6.852 1 33.16 ? C6 BOG 402 A 1 HETATM 12 O O6 BOG . . . C 3 -0.796 -10.421 -6.511 1 37.82 ? O6 BOG 402 A 1 HETATM 13 C C1' BOG . . . C 3 -4.879 -7.556 -7.428 1 28.97 ? C1' BOG 402 A 1 HETATM 14 C C2' BOG . . . C 3 -6.037 -6.863 -6.664 1 29.2 ? C2' BOG 402 A 1 HETATM 15 C C3' BOG . . . C 3 -5.656 -5.458 -6.477 1 30.12 ? C3' BOG 402 A 1 HETATM 16 C C4' BOG . . . C 3 -6.761 -4.78 -5.665 1 33.62 ? C4' BOG 402 A 1 HETATM 17 C C5' BOG . . . C 3 -6.322 -3.345 -5.555 1 39.71 ? C5' BOG 402 A 1 HETATM 18 C C6' BOG . . . C 3 -7.402 -2.594 -4.817 1 48.34 ? C6' BOG 402 A 1 HETATM 19 C C7' BOG . . . C 3 -7 -1.134 -4.801 1 52.66 ? C7' BOG 402 A 1 HETATM 20 C C8' BOG . . . C 3 -7.718 -0.505 -3.587 1 55.77 ? C8' BOG 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #