data_5MTY # _model_server_result.job_id Ab7YG5K7Ksohs4Aukx8wQQ _model_server_result.datetime_utc '2024-11-14 18:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5MTY # _exptl.entry_id 5MTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[2,4-bis(fluoranyl)-5-[[14-(2-hydroxyethylcarbamoyl)-2-oxidanylidene-6-tricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaenyl]amino]phenyl]thiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MTY _cell.length_a 67.118 _cell.length_b 70.179 _cell.length_c 74.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H23 F2 N3 O4 S' _chem_comp.formula_weight 547.572 _chem_comp.id HB9 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[2,4-bis(fluoranyl)-5-[[14-(2-hydroxyethylcarbamoyl)-2-oxidanylidene-6-tricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaenyl]amino]phenyl]thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBB CBC HB9 sing 177 n y CBB CAS HB9 doub 178 n y CBC CBD HB9 doub 179 n y CBD SBH HB9 sing 180 n y SBH CAS HB9 sing 181 n y CAS CAR HB9 sing 182 n n CAR OBA HB9 doub 183 n n CAR NAQ HB9 sing 184 n n NAQ CAK HB9 sing 185 n n CAK CAJ HB9 doub 186 n y CAK CAL HB9 sing 187 n y CAJ CAI HB9 sing 188 n y CAL FAP HB9 sing 189 n n CAL CAM HB9 doub 190 n y CAM CAN HB9 sing 191 n y CAN FAO HB9 sing 192 n n CAN CAI HB9 doub 193 n y CAI NAH HB9 sing 194 n n NAH CAW HB9 sing 195 n n CAW CAX HB9 doub 196 n y CAW CAV HB9 sing 197 n y CAX CBI HB9 sing 198 n y CAV CAA HB9 doub 199 n y CAA CBG HB9 sing 200 n y CBG CBF HB9 sing 201 n n CBG CBI HB9 doub 202 n y CBF OBE HB9 doub 203 n n CBF CBM HB9 sing 204 n n CBI CBJ HB9 sing 205 n n CBJ CBK HB9 sing 206 n n CBK CBL HB9 sing 207 n n CBL CAT HB9 doub 208 n y CBL CBM HB9 sing 209 n y CAT CAU HB9 sing 210 n y CAU CAY HB9 doub 211 n y CBM CAZ HB9 doub 212 n y CAZ CAY HB9 sing 213 n y CAY CAB HB9 sing 214 n n CAB OAD HB9 doub 215 n n CAB NAC HB9 sing 216 n n NAC CAE HB9 sing 217 n n CAE CAF HB9 sing 218 n n CAF OAG HB9 sing 219 n n CBB H1 HB9 sing 220 n n CBC H2 HB9 sing 221 n n CBD H3 HB9 sing 222 n n NAQ H6 HB9 sing 223 n n CAJ H7 HB9 sing 224 n n CAM H8 HB9 sing 225 n n NAH H9 HB9 sing 226 n n CAX H10 HB9 sing 227 n n CAV H11 HB9 sing 228 n n CAA H12 HB9 sing 229 n n CBJ H13 HB9 sing 230 n n CBJ H14 HB9 sing 231 n n CBK H15 HB9 sing 232 n n CBK H16 HB9 sing 233 n n CAT H17 HB9 sing 234 n n CAU H18 HB9 sing 235 n n CAZ H19 HB9 sing 236 n n NAC H20 HB9 sing 237 n n CAE H21 HB9 sing 238 n n CAE H22 HB9 sing 239 n n CAF H23 HB9 sing 240 n n CAF H24 HB9 sing 241 n n OAG H25 HB9 sing 242 n n # _atom_sites.entry_id 5MTY _atom_sites.fract_transf_matrix[1][1] 0.014899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HB9 A 1 401 1 HB9 DRG . C 3 BOG A 1 402 1 BOG BOG . D 3 BOG A 1 403 2 BOG BOG . E 4 HOH A 1 501 36 HOH HOH . E 4 HOH A 2 502 10 HOH HOH . E 4 HOH A 3 503 15 HOH HOH . E 4 HOH A 4 504 12 HOH HOH . E 4 HOH A 5 505 9 HOH HOH . E 4 HOH A 6 506 33 HOH HOH . E 4 HOH A 7 507 11 HOH HOH . E 4 HOH A 8 508 29 HOH HOH . E 4 HOH A 9 509 16 HOH HOH . E 4 HOH A 10 510 19 HOH HOH . E 4 HOH A 11 511 21 HOH HOH . E 4 HOH A 12 512 14 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 34 HOH HOH . E 4 HOH A 15 515 5 HOH HOH . E 4 HOH A 16 516 7 HOH HOH . E 4 HOH A 17 517 31 HOH HOH . E 4 HOH A 18 518 27 HOH HOH . E 4 HOH A 19 519 4 HOH HOH . E 4 HOH A 20 520 18 HOH HOH . E 4 HOH A 21 521 6 HOH HOH . E 4 HOH A 22 522 3 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 2 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 28 HOH HOH . E 4 HOH A 27 527 20 HOH HOH . E 4 HOH A 28 528 1 HOH HOH . E 4 HOH A 29 529 17 HOH HOH . E 4 HOH A 30 530 26 HOH HOH . E 4 HOH A 31 531 35 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 30 HOH HOH . E 4 HOH A 34 534 8 HOH HOH . E 4 HOH A 35 535 24 HOH HOH . E 4 HOH A 36 536 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBB HB9 . . . B 2 19.416 -6.577 -16.716 1 46.29 ? CBB HB9 401 A 1 HETATM 2 C CBC HB9 . . . B 2 18.814 -7.667 -16.193 1 46.67 ? CBC HB9 401 A 1 HETATM 3 C CBD HB9 . . . B 2 17.85 -8.169 -16.948 1 42.04 ? CBD HB9 401 A 1 HETATM 4 S SBH HB9 . . . B 2 17.789 -7.221 -18.21 1 41.46 ? SBH HB9 401 A 1 HETATM 5 C CAS HB9 . . . B 2 18.931 -6.223 -17.89 1 41.59 ? CAS HB9 401 A 1 HETATM 6 C CAR HB9 . . . B 2 19.33 -5.193 -18.644 1 37.41 ? CAR HB9 401 A 1 HETATM 7 O OBA HB9 . . . B 2 18.493 -4.588 -19.288 1 37.22 ? OBA HB9 401 A 1 HETATM 8 N NAQ HB9 . . . B 2 20.66 -4.881 -18.649 1 35.64 ? NAQ HB9 401 A 1 HETATM 9 C CAK HB9 . . . B 2 21.136 -3.857 -19.402 1 34.46 ? CAK HB9 401 A 1 HETATM 10 C CAJ HB9 . . . B 2 20.488 -2.668 -19.72 1 34.88 ? CAJ HB9 401 A 1 HETATM 11 C CAL HB9 . . . B 2 22.423 -4.035 -19.888 1 36.99 ? CAL HB9 401 A 1 HETATM 12 F FAP HB9 . . . B 2 23.003 -5.079 -19.606 1 34.53 ? FAP HB9 401 A 1 HETATM 13 C CAM HB9 . . . B 2 23.055 -3.072 -20.675 1 35.95 ? CAM HB9 401 A 1 HETATM 14 C CAN HB9 . . . B 2 22.393 -1.894 -20.981 1 37.18 ? CAN HB9 401 A 1 HETATM 15 F FAO HB9 . . . B 2 22.992 -0.997 -21.745 1 35 ? FAO HB9 401 A 1 HETATM 16 C CAI HB9 . . . B 2 21.078 -1.704 -20.513 1 35.94 ? CAI HB9 401 A 1 HETATM 17 N NAH HB9 . . . B 2 20.401 -0.562 -20.743 1 34.74 ? NAH HB9 401 A 1 HETATM 18 C CAW HB9 . . . B 2 20.248 0.063 -21.939 1 38.7 ? CAW HB9 401 A 1 HETATM 19 C CAX HB9 . . . B 2 19.541 1.277 -21.907 1 38.64 ? CAX HB9 401 A 1 HETATM 20 C CAV HB9 . . . B 2 20.738 -0.389 -23.187 1 36.16 ? CAV HB9 401 A 1 HETATM 21 C CAA HB9 . . . B 2 20.513 0.361 -24.33 1 37.41 ? CAA HB9 401 A 1 HETATM 22 C CBG HB9 . . . B 2 19.796 1.554 -24.298 1 39.36 ? CBG HB9 401 A 1 HETATM 23 C CBF HB9 . . . B 2 19.662 2.233 -25.529 1 41.95 ? CBF HB9 401 A 1 HETATM 24 O OBE HB9 . . . B 2 19.666 1.647 -26.6 1 34.73 ? OBE HB9 401 A 1 HETATM 25 C CBI HB9 . . . B 2 19.295 2.02 -23.072 1 41.94 ? CBI HB9 401 A 1 HETATM 26 C CBJ HB9 . . . B 2 18.519 3.21 -22.819 1 43.04 ? CBJ HB9 401 A 1 HETATM 27 C CBK HB9 . . . B 2 17.594 3.633 -24.007 1 41.95 ? CBK HB9 401 A 1 HETATM 28 C CBL HB9 . . . B 2 18.469 4.277 -24.866 1 46.1 ? CBL HB9 401 A 1 HETATM 29 C CAT HB9 . . . B 2 18.372 5.675 -24.925 1 49.84 ? CAT HB9 401 A 1 HETATM 30 C CAU HB9 . . . B 2 19.254 6.379 -25.726 1 50.34 ? CAU HB9 401 A 1 HETATM 31 C CBM HB9 . . . B 2 19.463 3.608 -25.561 1 44.89 ? CBM HB9 401 A 1 HETATM 32 C CAZ HB9 . . . B 2 20.364 4.312 -26.328 1 47.6 ? CAZ HB9 401 A 1 HETATM 33 C CAY HB9 . . . B 2 20.252 5.695 -26.425 1 52.29 ? CAY HB9 401 A 1 HETATM 34 C CAB HB9 . . . B 2 21.171 6.388 -27.203 1 56.25 ? CAB HB9 401 A 1 HETATM 35 O OAD HB9 . . . B 2 21.621 5.927 -28.246 1 53.68 ? OAD HB9 401 A 1 HETATM 36 N NAC HB9 . . . B 2 21.645 7.528 -26.672 1 61.59 ? NAC HB9 401 A 1 HETATM 37 C CAE HB9 . . . B 2 22.677 8.281 -27.369 1 63.31 ? CAE HB9 401 A 1 HETATM 38 C CAF HB9 . . . B 2 22.483 9.755 -27.074 1 67.41 ? CAF HB9 401 A 1 HETATM 39 O OAG HB9 . . . B 2 21.379 10.209 -27.878 1 66.78 ? OAG HB9 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #