data_5MTY # _model_server_result.job_id CT1pHw2U4ooEWv23iTIrvw _model_server_result.datetime_utc '2024-11-14 18:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MTY # _exptl.entry_id 5MTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MTY _cell.length_a 67.118 _cell.length_b 70.179 _cell.length_c 74.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5MTY _atom_sites.fract_transf_matrix[1][1] 0.014899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HB9 A 1 401 1 HB9 DRG . C 3 BOG A 1 402 1 BOG BOG . D 3 BOG A 1 403 2 BOG BOG . E 4 HOH A 1 501 36 HOH HOH . E 4 HOH A 2 502 10 HOH HOH . E 4 HOH A 3 503 15 HOH HOH . E 4 HOH A 4 504 12 HOH HOH . E 4 HOH A 5 505 9 HOH HOH . E 4 HOH A 6 506 33 HOH HOH . E 4 HOH A 7 507 11 HOH HOH . E 4 HOH A 8 508 29 HOH HOH . E 4 HOH A 9 509 16 HOH HOH . E 4 HOH A 10 510 19 HOH HOH . E 4 HOH A 11 511 21 HOH HOH . E 4 HOH A 12 512 14 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 34 HOH HOH . E 4 HOH A 15 515 5 HOH HOH . E 4 HOH A 16 516 7 HOH HOH . E 4 HOH A 17 517 31 HOH HOH . E 4 HOH A 18 518 27 HOH HOH . E 4 HOH A 19 519 4 HOH HOH . E 4 HOH A 20 520 18 HOH HOH . E 4 HOH A 21 521 6 HOH HOH . E 4 HOH A 22 522 3 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 2 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 28 HOH HOH . E 4 HOH A 27 527 20 HOH HOH . E 4 HOH A 28 528 1 HOH HOH . E 4 HOH A 29 529 17 HOH HOH . E 4 HOH A 30 530 26 HOH HOH . E 4 HOH A 31 531 35 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 30 HOH HOH . E 4 HOH A 34 534 8 HOH HOH . E 4 HOH A 35 535 24 HOH HOH . E 4 HOH A 36 536 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 -4.747 -9.736 -6.697 1 38.55 ? C1 BOG 402 A 1 HETATM 2 O O1 BOG . . . C 3 -5.165 -8.793 -7.601 1 38.46 ? O1 BOG 402 A 1 HETATM 3 C C2 BOG . . . C 3 -5.525 -10.982 -6.93 1 37 ? C2 BOG 402 A 1 HETATM 4 O O2 BOG . . . C 3 -6.896 -10.729 -6.657 1 37.42 ? O2 BOG 402 A 1 HETATM 5 C C3 BOG . . . C 3 -5.023 -11.994 -5.972 1 37.66 ? C3 BOG 402 A 1 HETATM 6 O O3 BOG . . . C 3 -5.667 -13.179 -6.238 1 38.98 ? O3 BOG 402 A 1 HETATM 7 C C4 BOG . . . C 3 -3.573 -12.221 -6.264 1 38.97 ? C4 BOG 402 A 1 HETATM 8 O O4 BOG . . . C 3 -3.046 -13.209 -5.412 1 39.19 ? O4 BOG 402 A 1 HETATM 9 C C5 BOG . . . C 3 -2.85 -10.936 -6.089 1 39.34 ? C5 BOG 402 A 1 HETATM 10 O O5 BOG . . . C 3 -3.387 -9.988 -7.002 1 37.73 ? O5 BOG 402 A 1 HETATM 11 C C6 BOG . . . C 3 -1.427 -11.216 -6.393 1 42.56 ? C6 BOG 402 A 1 HETATM 12 O O6 BOG . . . C 3 -0.78 -9.983 -6.726 1 46.47 ? O6 BOG 402 A 1 HETATM 13 C C1' BOG . . . C 3 -4.707 -7.533 -7.253 1 38.53 ? C1' BOG 402 A 1 HETATM 14 C C2' BOG . . . C 3 -5.929 -6.907 -6.65 1 39.33 ? C2' BOG 402 A 1 HETATM 15 C C3' BOG . . . C 3 -5.592 -5.438 -6.626 1 39.54 ? C3' BOG 402 A 1 HETATM 16 C C4' BOG . . . C 3 -6.626 -4.713 -5.783 1 40.07 ? C4' BOG 402 A 1 HETATM 17 C C5' BOG . . . C 3 -6.031 -3.358 -5.676 1 43.45 ? C5' BOG 402 A 1 HETATM 18 C C6' BOG . . . C 3 -7.019 -2.441 -4.958 1 46.91 ? C6' BOG 402 A 1 HETATM 19 C C7' BOG . . . C 3 -6.473 -1.047 -5.223 1 50.33 ? C7' BOG 402 A 1 HETATM 20 C C8' BOG . . . C 3 -7.317 0.008 -4.488 1 51.66 ? C8' BOG 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #