data_5MUG # _model_server_result.job_id yRMiEZthvejF1IW5CNLcFw _model_server_result.datetime_utc '2024-11-24 23:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5MUG # _exptl.entry_id 5MUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.706 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MUG _cell.length_a 168.259 _cell.length_b 168.259 _cell.length_c 168.259 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 33 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 80 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 33 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 80 _struct_conn.ptnr2_symmetry 19_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H50 O2' _chem_comp.formula_weight 430.706 _chem_comp.id VIV _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C4 VIV sing 390 n n O1 C9 VIV sing 391 n n O2 C7 VIV sing 392 n n O2 HO21 VIV sing 393 n n C1 C23 VIV sing 394 n n C1 HC11 VIV sing 395 n n C1 HC12 VIV sing 396 n n C1 HC13 VIV sing 397 n n C2 C3 VIV doub 398 n y C2 C7 VIV sing 399 n y C2 C8 VIV sing 400 n n C3 C4 VIV sing 401 n y C3 C10 VIV sing 402 n n C4 C5 VIV doub 403 n y C5 C6 VIV sing 404 n y C5 C12 VIV sing 405 n n C6 C7 VIV doub 406 n y C6 C13 VIV sing 407 n n C8 HC81 VIV sing 408 n n C8 HC82 VIV sing 409 n n C8 HC83 VIV sing 410 n n C9 C11 VIV sing 411 n n C9 C14 VIV sing 412 n n C9 C15 VIV sing 413 n n C10 C11 VIV sing 414 n n C10 H101 VIV sing 415 n n C10 H102 VIV sing 416 n n C11 H111 VIV sing 417 n n C11 H112 VIV sing 418 n n C12 H121 VIV sing 419 n n C12 H122 VIV sing 420 n n C12 H123 VIV sing 421 n n C13 H131 VIV sing 422 n n C13 H132 VIV sing 423 n n C13 H133 VIV sing 424 n n C14 H141 VIV sing 425 n n C14 H142 VIV sing 426 n n C14 H143 VIV sing 427 n n C15 C16 VIV sing 428 n n C15 H151 VIV sing 429 n n C15 H152 VIV sing 430 n n C16 C17 VIV sing 431 n n C16 H161 VIV sing 432 n n C16 H162 VIV sing 433 n n C17 C18 VIV sing 434 n n C17 H171 VIV sing 435 n n C17 H172 VIV sing 436 n n C18 C19 VIV sing 437 n n C18 C20 VIV sing 438 n n C18 H18 VIV sing 439 n n C19 H191 VIV sing 440 n n C19 H192 VIV sing 441 n n C19 H193 VIV sing 442 n n C20 C21 VIV sing 443 n n C20 H201 VIV sing 444 n n C20 H202 VIV sing 445 n n C21 C22 VIV sing 446 n n C21 H211 VIV sing 447 n n C21 H212 VIV sing 448 n n C22 C23 VIV sing 449 n n C22 H221 VIV sing 450 n n C22 H222 VIV sing 451 n n C23 C24 VIV sing 452 n n C23 H23 VIV sing 453 n n C24 C25 VIV sing 454 n n C24 H241 VIV sing 455 n n C24 H242 VIV sing 456 n n C25 C26 VIV sing 457 n n C25 H251 VIV sing 458 n n C25 H252 VIV sing 459 n n C26 C27 VIV sing 460 n n C26 H261 VIV sing 461 n n C26 H262 VIV sing 462 n n C27 C28 VIV sing 463 n n C27 C29 VIV sing 464 n n C27 H27 VIV sing 465 n n C28 H281 VIV sing 466 n n C28 H282 VIV sing 467 n n C28 H283 VIV sing 468 n n C29 H291 VIV sing 469 n n C29 H292 VIV sing 470 n n C29 H293 VIV sing 471 n n # _atom_sites.entry_id 5MUG _atom_sites.fract_transf_matrix[1][1] 0.005943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VIV A 1 301 1278 VIV VIV . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 CL A 1 303 1 CL CL . E 4 CL A 1 304 2 CL CL . F 5 ETA A 1 305 1 ETA TRS . G 6 HOH A 1 401 13 HOH HOH . G 6 HOH A 2 402 11 HOH HOH . G 6 HOH A 3 403 51 HOH HOH . G 6 HOH A 4 404 15 HOH HOH . G 6 HOH A 5 405 4 HOH HOH . G 6 HOH A 6 406 52 HOH HOH . G 6 HOH A 7 407 10 HOH HOH . G 6 HOH A 8 408 5 HOH HOH . G 6 HOH A 9 409 9 HOH HOH . G 6 HOH A 10 410 28 HOH HOH . G 6 HOH A 11 411 21 HOH HOH . G 6 HOH A 12 412 26 HOH HOH . G 6 HOH A 13 413 38 HOH HOH . G 6 HOH A 14 414 6 HOH HOH . G 6 HOH A 15 415 24 HOH HOH . G 6 HOH A 16 416 8 HOH HOH . G 6 HOH A 17 417 39 HOH HOH . G 6 HOH A 18 418 19 HOH HOH . G 6 HOH A 19 419 22 HOH HOH . G 6 HOH A 20 420 1 HOH HOH . G 6 HOH A 21 421 2 HOH HOH . G 6 HOH A 22 422 7 HOH HOH . G 6 HOH A 23 423 20 HOH HOH . G 6 HOH A 24 424 33 HOH HOH . G 6 HOH A 25 425 17 HOH HOH . G 6 HOH A 26 426 36 HOH HOH . G 6 HOH A 27 427 34 HOH HOH . G 6 HOH A 28 428 40 HOH HOH . G 6 HOH A 29 429 56 HOH HOH . G 6 HOH A 30 430 29 HOH HOH . G 6 HOH A 31 431 23 HOH HOH . G 6 HOH A 32 432 50 HOH HOH . G 6 HOH A 33 433 46 HOH HOH . G 6 HOH A 34 434 25 HOH HOH . G 6 HOH A 35 435 27 HOH HOH . G 6 HOH A 36 436 41 HOH HOH . G 6 HOH A 37 437 35 HOH HOH . G 6 HOH A 38 438 44 HOH HOH . G 6 HOH A 39 439 18 HOH HOH . G 6 HOH A 40 440 30 HOH HOH . G 6 HOH A 41 441 48 HOH HOH . G 6 HOH A 42 442 12 HOH HOH . G 6 HOH A 43 443 3 HOH HOH . G 6 HOH A 44 444 32 HOH HOH . G 6 HOH A 45 445 45 HOH HOH . G 6 HOH A 46 446 37 HOH HOH . G 6 HOH A 47 447 54 HOH HOH . G 6 HOH A 48 448 47 HOH HOH . G 6 HOH A 49 449 16 HOH HOH . G 6 HOH A 50 450 14 HOH HOH . G 6 HOH A 51 451 43 HOH HOH . G 6 HOH A 52 452 31 HOH HOH . G 6 HOH A 53 453 49 HOH HOH . G 6 HOH A 54 454 53 HOH HOH . G 6 HOH A 55 455 42 HOH HOH . G 6 HOH A 56 456 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VIV . . . B 2 12.077 -48.475 26.54 1 45.77 ? O1 VIV 301 A 1 HETATM 2 O O2 VIV . . . B 2 16.531 -47.373 23.264 1 45.75 ? O2 VIV 301 A 1 HETATM 3 C C1 VIV . . . B 2 4.236 -51.338 23.514 1 54.13 ? C1 VIV 301 A 1 HETATM 4 C C2 VIV . . . B 2 14.482 -48.588 23.661 1 44.5 ? C2 VIV 301 A 1 HETATM 5 C C3 VIV . . . B 2 13.361 -48.879 24.47 1 44.91 ? C3 VIV 301 A 1 HETATM 6 C C4 VIV . . . B 2 13.199 -48.216 25.684 1 44.76 ? C4 VIV 301 A 1 HETATM 7 C C5 VIV . . . B 2 14.153 -47.263 26.113 1 43.64 ? C5 VIV 301 A 1 HETATM 8 C C6 VIV . . . B 2 15.259 -46.976 25.317 1 43.47 ? C6 VIV 301 A 1 HETATM 9 C C7 VIV . . . B 2 15.422 -47.645 24.084 1 44.61 ? C7 VIV 301 A 1 HETATM 10 C C8 VIV . . . B 2 14.672 -49.3 22.339 1 43.92 ? C8 VIV 301 A 1 HETATM 11 C C9 VIV . . . B 2 10.948 -49.04 25.915 1 46.51 ? C9 VIV 301 A 1 HETATM 12 C C10 VIV . . . B 2 12.33 -49.919 23.998 1 45.19 ? C10 VIV 301 A 1 HETATM 13 C C11 VIV . . . B 2 11.265 -50.209 25.018 1 45.82 ? C11 VIV 301 A 1 HETATM 14 C C12 VIV . . . B 2 13.951 -46.563 27.439 1 42.99 ? C12 VIV 301 A 1 HETATM 15 C C13 VIV . . . B 2 16.27 -45.95 25.784 1 42.45 ? C13 VIV 301 A 1 HETATM 16 C C14 VIV . . . B 2 10.226 -47.972 25.114 1 46.29 ? C14 VIV 301 A 1 HETATM 17 C C15 VIV . . . B 2 10.037 -49.517 27.056 1 47.23 ? C15 VIV 301 A 1 HETATM 18 C C16 VIV . . . B 2 8.663 -49.946 26.604 1 48.32 ? C16 VIV 301 A 1 HETATM 19 C C17 VIV . . . B 2 7.718 -50.058 27.78 1 49.33 ? C17 VIV 301 A 1 HETATM 20 C C18 VIV . . . B 2 6.486 -50.865 27.44 1 50.46 ? C18 VIV 301 A 1 HETATM 21 C C19 VIV . . . B 2 5.726 -51.189 28.71 1 50.5 ? C19 VIV 301 A 1 HETATM 22 C C20 VIV . . . B 2 6.909 -52.134 26.731 1 51.16 ? C20 VIV 301 A 1 HETATM 23 C C21 VIV . . . B 2 5.768 -53.11 26.544 1 52.26 ? C21 VIV 301 A 1 HETATM 24 C C22 VIV . . . B 2 4.728 -52.651 25.539 1 53.07 ? C22 VIV 301 A 1 HETATM 25 C C23 VIV . . . B 2 5.309 -52.114 24.247 1 53.75 ? C23 VIV 301 A 1 HETATM 26 C C24 VIV . . . B 2 5.779 -53.259 23.377 1 53.71 ? C24 VIV 301 A 1 HETATM 27 C C25 VIV . . . B 2 6.338 -52.764 22.061 1 54.02 ? C25 VIV 301 A 1 HETATM 28 C C26 VIV . . . B 2 7.522 -51.842 22.253 1 54.41 ? C26 VIV 301 A 1 HETATM 29 C C27 VIV . . . B 2 8.131 -51.416 20.937 1 55.23 ? C27 VIV 301 A 1 HETATM 30 C C28 VIV . . . B 2 9.344 -50.541 21.164 1 56.27 ? C28 VIV 301 A 1 HETATM 31 C C29 VIV . . . B 2 7.112 -50.725 20.057 1 54.42 ? C29 VIV 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #