data_5MUT # _model_server_result.job_id GSkk5pUSYr24ag_EXKB8vA _model_server_result.datetime_utc '2024-11-23 03:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MUT # _exptl.entry_id 5MUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MUT _cell.length_a 91.08 _cell.length_b 91.08 _cell.length_c 122.522 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 322 n y N1 C6 ORO sing 323 n y N1 HN1 ORO sing 324 n n C2 O2 ORO doub 325 n n C2 N3 ORO sing 326 n y N3 C4 ORO sing 327 n y N3 HN3 ORO sing 328 n n C4 O4 ORO doub 329 n n C4 C5 ORO sing 330 n y C5 C6 ORO doub 331 n y C5 H5 ORO sing 332 n n C6 C7 ORO sing 333 n n C7 O71 ORO doub 334 n n C7 O72 ORO sing 335 n n O72 HO7 ORO sing 336 n n # _atom_sites.entry_id 5MUT _atom_sites.fract_transf_matrix[1][1] 0.010979 _atom_sites.fract_transf_matrix[1][2] 0.006339 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 401 FMN FMN . C 3 ORO A 1 402 402 ORO ORO . D 4 HYT A 1 403 403 HYT HYT . E 5 ACT A 1 404 404 ACT ACT . F 5 ACT A 1 405 405 ACT ACT . G 6 CL A 1 406 406 CL CL . H 6 CL A 1 407 407 CL CL . I 6 CL A 1 408 408 CL CL . J 7 HOH A 1 501 642 HOH HOH . J 7 HOH A 2 502 748 HOH HOH . J 7 HOH A 3 503 520 HOH HOH . J 7 HOH A 4 504 665 HOH HOH . J 7 HOH A 5 505 580 HOH HOH . J 7 HOH A 6 506 770 HOH HOH . J 7 HOH A 7 507 658 HOH HOH . J 7 HOH A 8 508 614 HOH HOH . J 7 HOH A 9 509 762 HOH HOH . J 7 HOH A 10 510 578 HOH HOH . J 7 HOH A 11 511 541 HOH HOH . J 7 HOH A 12 512 700 HOH HOH . J 7 HOH A 13 513 629 HOH HOH . J 7 HOH A 14 514 671 HOH HOH . J 7 HOH A 15 515 651 HOH HOH . J 7 HOH A 16 516 698 HOH HOH . J 7 HOH A 17 517 558 HOH HOH . J 7 HOH A 18 518 601 HOH HOH . J 7 HOH A 19 519 619 HOH HOH . J 7 HOH A 20 520 502 HOH HOH . J 7 HOH A 21 521 504 HOH HOH . J 7 HOH A 22 522 724 HOH HOH . J 7 HOH A 23 523 749 HOH HOH . J 7 HOH A 24 524 691 HOH HOH . J 7 HOH A 25 525 521 HOH HOH . J 7 HOH A 26 526 550 HOH HOH . J 7 HOH A 27 527 656 HOH HOH . J 7 HOH A 28 528 523 HOH HOH . J 7 HOH A 29 529 575 HOH HOH . J 7 HOH A 30 530 657 HOH HOH . J 7 HOH A 31 531 528 HOH HOH . J 7 HOH A 32 532 593 HOH HOH . J 7 HOH A 33 533 525 HOH HOH . J 7 HOH A 34 534 756 HOH HOH . J 7 HOH A 35 535 650 HOH HOH . J 7 HOH A 36 536 632 HOH HOH . J 7 HOH A 37 537 647 HOH HOH . J 7 HOH A 38 538 626 HOH HOH . J 7 HOH A 39 539 616 HOH HOH . J 7 HOH A 40 540 526 HOH HOH . J 7 HOH A 41 541 720 HOH HOH . J 7 HOH A 42 542 563 HOH HOH . J 7 HOH A 43 543 706 HOH HOH . J 7 HOH A 44 544 538 HOH HOH . J 7 HOH A 45 545 510 HOH HOH . J 7 HOH A 46 546 590 HOH HOH . J 7 HOH A 47 547 685 HOH HOH . J 7 HOH A 48 548 532 HOH HOH . J 7 HOH A 49 549 507 HOH HOH . J 7 HOH A 50 550 498 HOH HOH . J 7 HOH A 51 551 604 HOH HOH . J 7 HOH A 52 552 586 HOH HOH . J 7 HOH A 53 553 530 HOH HOH . J 7 HOH A 54 554 564 HOH HOH . J 7 HOH A 55 555 552 HOH HOH . J 7 HOH A 56 556 600 HOH HOH . J 7 HOH A 57 557 771 HOH HOH . J 7 HOH A 58 558 556 HOH HOH . J 7 HOH A 59 559 509 HOH HOH . J 7 HOH A 60 560 511 HOH HOH . J 7 HOH A 61 561 555 HOH HOH . J 7 HOH A 62 562 669 HOH HOH . J 7 HOH A 63 563 588 HOH HOH . J 7 HOH A 64 564 514 HOH HOH . J 7 HOH A 65 565 549 HOH HOH . J 7 HOH A 66 566 560 HOH HOH . J 7 HOH A 67 567 515 HOH HOH . J 7 HOH A 68 568 596 HOH HOH . J 7 HOH A 69 569 653 HOH HOH . J 7 HOH A 70 570 709 HOH HOH . J 7 HOH A 71 571 610 HOH HOH . J 7 HOH A 72 572 677 HOH HOH . J 7 HOH A 73 573 731 HOH HOH . J 7 HOH A 74 574 778 HOH HOH . J 7 HOH A 75 575 750 HOH HOH . J 7 HOH A 76 576 620 HOH HOH . J 7 HOH A 77 577 754 HOH HOH . J 7 HOH A 78 578 554 HOH HOH . J 7 HOH A 79 579 743 HOH HOH . J 7 HOH A 80 580 505 HOH HOH . J 7 HOH A 81 581 576 HOH HOH . J 7 HOH A 82 582 631 HOH HOH . J 7 HOH A 83 583 572 HOH HOH . J 7 HOH A 84 584 689 HOH HOH . J 7 HOH A 85 585 512 HOH HOH . J 7 HOH A 86 586 641 HOH HOH . J 7 HOH A 87 587 739 HOH HOH . J 7 HOH A 88 588 636 HOH HOH . J 7 HOH A 89 589 562 HOH HOH . J 7 HOH A 90 590 561 HOH HOH . J 7 HOH A 91 591 546 HOH HOH . J 7 HOH A 92 592 602 HOH HOH . J 7 HOH A 93 593 536 HOH HOH . J 7 HOH A 94 594 597 HOH HOH . J 7 HOH A 95 595 639 HOH HOH . J 7 HOH A 96 596 768 HOH HOH . J 7 HOH A 97 597 581 HOH HOH . J 7 HOH A 98 598 542 HOH HOH . J 7 HOH A 99 599 524 HOH HOH . J 7 HOH A 100 600 570 HOH HOH . J 7 HOH A 101 601 585 HOH HOH . J 7 HOH A 102 602 772 HOH HOH . J 7 HOH A 103 603 721 HOH HOH . J 7 HOH A 104 604 534 HOH HOH . J 7 HOH A 105 605 499 HOH HOH . J 7 HOH A 106 606 518 HOH HOH . J 7 HOH A 107 607 618 HOH HOH . J 7 HOH A 108 608 608 HOH HOH . J 7 HOH A 109 609 612 HOH HOH . J 7 HOH A 110 610 710 HOH HOH . J 7 HOH A 111 611 537 HOH HOH . J 7 HOH A 112 612 776 HOH HOH . J 7 HOH A 113 613 633 HOH HOH . J 7 HOH A 114 614 592 HOH HOH . J 7 HOH A 115 615 598 HOH HOH . J 7 HOH A 116 616 503 HOH HOH . J 7 HOH A 117 617 729 HOH HOH . J 7 HOH A 118 618 757 HOH HOH . J 7 HOH A 119 619 565 HOH HOH . J 7 HOH A 120 620 646 HOH HOH . J 7 HOH A 121 621 638 HOH HOH . J 7 HOH A 122 622 545 HOH HOH . J 7 HOH A 123 623 741 HOH HOH . J 7 HOH A 124 624 540 HOH HOH . J 7 HOH A 125 625 676 HOH HOH . J 7 HOH A 126 626 672 HOH HOH . J 7 HOH A 127 627 764 HOH HOH . J 7 HOH A 128 628 735 HOH HOH . J 7 HOH A 129 629 738 HOH HOH . J 7 HOH A 130 630 623 HOH HOH . J 7 HOH A 131 631 547 HOH HOH . J 7 HOH A 132 632 733 HOH HOH . J 7 HOH A 133 633 668 HOH HOH . J 7 HOH A 134 634 661 HOH HOH . J 7 HOH A 135 635 606 HOH HOH . J 7 HOH A 136 636 516 HOH HOH . J 7 HOH A 137 637 723 HOH HOH . J 7 HOH A 138 638 605 HOH HOH . J 7 HOH A 139 639 673 HOH HOH . J 7 HOH A 140 640 568 HOH HOH . J 7 HOH A 141 641 648 HOH HOH . J 7 HOH A 142 642 662 HOH HOH . J 7 HOH A 143 643 630 HOH HOH . J 7 HOH A 144 644 548 HOH HOH . J 7 HOH A 145 645 577 HOH HOH . J 7 HOH A 146 646 535 HOH HOH . J 7 HOH A 147 647 760 HOH HOH . J 7 HOH A 148 648 617 HOH HOH . J 7 HOH A 149 649 715 HOH HOH . J 7 HOH A 150 650 501 HOH HOH . J 7 HOH A 151 651 628 HOH HOH . J 7 HOH A 152 652 666 HOH HOH . J 7 HOH A 153 653 684 HOH HOH . J 7 HOH A 154 654 786 HOH HOH . J 7 HOH A 155 655 573 HOH HOH . J 7 HOH A 156 656 637 HOH HOH . J 7 HOH A 157 657 796 HOH HOH . J 7 HOH A 158 658 551 HOH HOH . J 7 HOH A 159 659 508 HOH HOH . J 7 HOH A 160 660 609 HOH HOH . J 7 HOH A 161 661 719 HOH HOH . J 7 HOH A 162 662 533 HOH HOH . J 7 HOH A 163 663 622 HOH HOH . J 7 HOH A 164 664 544 HOH HOH . J 7 HOH A 165 665 513 HOH HOH . J 7 HOH A 166 666 624 HOH HOH . J 7 HOH A 167 667 730 HOH HOH . J 7 HOH A 168 668 678 HOH HOH . J 7 HOH A 169 669 693 HOH HOH . J 7 HOH A 170 670 766 HOH HOH . J 7 HOH A 171 671 506 HOH HOH . J 7 HOH A 172 672 603 HOH HOH . J 7 HOH A 173 673 789 HOH HOH . J 7 HOH A 174 674 765 HOH HOH . J 7 HOH A 175 675 595 HOH HOH . J 7 HOH A 176 676 675 HOH HOH . J 7 HOH A 177 677 793 HOH HOH . J 7 HOH A 178 678 643 HOH HOH . J 7 HOH A 179 679 584 HOH HOH . J 7 HOH A 180 680 569 HOH HOH . J 7 HOH A 181 681 644 HOH HOH . J 7 HOH A 182 682 692 HOH HOH . J 7 HOH A 183 683 732 HOH HOH . J 7 HOH A 184 684 519 HOH HOH . J 7 HOH A 185 685 713 HOH HOH . J 7 HOH A 186 686 681 HOH HOH . J 7 HOH A 187 687 582 HOH HOH . J 7 HOH A 188 688 788 HOH HOH . J 7 HOH A 189 689 529 HOH HOH . J 7 HOH A 190 690 708 HOH HOH . J 7 HOH A 191 691 559 HOH HOH . J 7 HOH A 192 692 522 HOH HOH . J 7 HOH A 193 693 587 HOH HOH . J 7 HOH A 194 694 728 HOH HOH . J 7 HOH A 195 695 517 HOH HOH . J 7 HOH A 196 696 621 HOH HOH . J 7 HOH A 197 697 640 HOH HOH . J 7 HOH A 198 698 755 HOH HOH . J 7 HOH A 199 699 591 HOH HOH . J 7 HOH A 200 700 589 HOH HOH . J 7 HOH A 201 701 694 HOH HOH . J 7 HOH A 202 702 654 HOH HOH . J 7 HOH A 203 703 737 HOH HOH . J 7 HOH A 204 704 722 HOH HOH . J 7 HOH A 205 705 567 HOH HOH . J 7 HOH A 206 706 553 HOH HOH . J 7 HOH A 207 707 703 HOH HOH . J 7 HOH A 208 708 615 HOH HOH . J 7 HOH A 209 709 543 HOH HOH . J 7 HOH A 210 710 699 HOH HOH . J 7 HOH A 211 711 777 HOH HOH . J 7 HOH A 212 712 736 HOH HOH . J 7 HOH A 213 713 539 HOH HOH . J 7 HOH A 214 714 775 HOH HOH . J 7 HOH A 215 715 751 HOH HOH . J 7 HOH A 216 716 635 HOH HOH . J 7 HOH A 217 717 784 HOH HOH . J 7 HOH A 218 718 527 HOH HOH . J 7 HOH A 219 719 763 HOH HOH . J 7 HOH A 220 720 783 HOH HOH . J 7 HOH A 221 721 613 HOH HOH . J 7 HOH A 222 722 557 HOH HOH . J 7 HOH A 223 723 660 HOH HOH . J 7 HOH A 224 724 663 HOH HOH . J 7 HOH A 225 725 797 HOH HOH . J 7 HOH A 226 726 707 HOH HOH . J 7 HOH A 227 727 696 HOH HOH . J 7 HOH A 228 728 780 HOH HOH . J 7 HOH A 229 729 574 HOH HOH . J 7 HOH A 230 730 714 HOH HOH . J 7 HOH A 231 731 583 HOH HOH . J 7 HOH A 232 732 701 HOH HOH . J 7 HOH A 233 733 687 HOH HOH . J 7 HOH A 234 734 594 HOH HOH . J 7 HOH A 235 735 758 HOH HOH . J 7 HOH A 236 736 659 HOH HOH . J 7 HOH A 237 737 761 HOH HOH . J 7 HOH A 238 738 711 HOH HOH . J 7 HOH A 239 739 531 HOH HOH . J 7 HOH A 240 740 702 HOH HOH . J 7 HOH A 241 741 794 HOH HOH . J 7 HOH A 242 742 742 HOH HOH . J 7 HOH A 243 743 791 HOH HOH . J 7 HOH A 244 744 607 HOH HOH . J 7 HOH A 245 745 599 HOH HOH . J 7 HOH A 246 746 781 HOH HOH . J 7 HOH A 247 747 690 HOH HOH . J 7 HOH A 248 748 747 HOH HOH . J 7 HOH A 249 749 717 HOH HOH . J 7 HOH A 250 750 682 HOH HOH . J 7 HOH A 251 751 688 HOH HOH . J 7 HOH A 252 752 652 HOH HOH . J 7 HOH A 253 753 497 HOH HOH . J 7 HOH A 254 754 705 HOH HOH . J 7 HOH A 255 755 716 HOH HOH . J 7 HOH A 256 756 667 HOH HOH . J 7 HOH A 257 757 645 HOH HOH . J 7 HOH A 258 758 679 HOH HOH . J 7 HOH A 259 759 566 HOH HOH . J 7 HOH A 260 760 769 HOH HOH . J 7 HOH A 261 761 655 HOH HOH . J 7 HOH A 262 762 674 HOH HOH . J 7 HOH A 263 763 500 HOH HOH . J 7 HOH A 264 764 767 HOH HOH . J 7 HOH A 265 765 740 HOH HOH . J 7 HOH A 266 766 779 HOH HOH . J 7 HOH A 267 767 625 HOH HOH . J 7 HOH A 268 768 745 HOH HOH . J 7 HOH A 269 769 686 HOH HOH . J 7 HOH A 270 770 746 HOH HOH . J 7 HOH A 271 771 712 HOH HOH . J 7 HOH A 272 772 795 HOH HOH . J 7 HOH A 273 773 704 HOH HOH . J 7 HOH A 274 774 774 HOH HOH . J 7 HOH A 275 775 744 HOH HOH . J 7 HOH A 276 776 664 HOH HOH . J 7 HOH A 277 777 571 HOH HOH . J 7 HOH A 278 778 695 HOH HOH . J 7 HOH A 279 779 726 HOH HOH . J 7 HOH A 280 780 680 HOH HOH . J 7 HOH A 281 781 649 HOH HOH . J 7 HOH A 282 782 787 HOH HOH . J 7 HOH A 283 783 727 HOH HOH . J 7 HOH A 284 784 753 HOH HOH . J 7 HOH A 285 785 752 HOH HOH . J 7 HOH A 286 786 579 HOH HOH . J 7 HOH A 287 787 790 HOH HOH . J 7 HOH A 288 788 725 HOH HOH . J 7 HOH A 289 789 718 HOH HOH . J 7 HOH A 290 790 759 HOH HOH . J 7 HOH A 291 791 634 HOH HOH . J 7 HOH A 292 792 773 HOH HOH . J 7 HOH A 293 793 697 HOH HOH . J 7 HOH A 294 794 611 HOH HOH . J 7 HOH A 295 795 683 HOH HOH . J 7 HOH A 296 796 792 HOH HOH . J 7 HOH A 297 797 670 HOH HOH . J 7 HOH A 298 798 627 HOH HOH . J 7 HOH A 299 799 734 HOH HOH . J 7 HOH A 300 800 782 HOH HOH . J 7 HOH A 301 801 785 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 37.939 26.079 -4.641 1 6.57 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 36.628 26.469 -5.05 1 6.47 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 35.774 26.641 -4.243 1 6.98 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 36.421 26.643 -6.428 1 6.21 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 37.419 26.406 -7.413 1 8.02 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 37.184 26.613 -8.573 1 6.21 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 38.807 25.963 -6.945 1 4.95 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 38.967 25.805 -5.633 1 6.26 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 40.306 25.446 -5.064 1 9.2 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 40.99 24.588 -5.616 1 8.69 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 40.666 26.125 -4.061 1 8.4 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #