data_5MUV # _model_server_result.job_id UY-unmBvIv3h6c43R-xxKQ _model_server_result.datetime_utc '2024-11-15 22:43:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5muv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":402}' # _entry.id 5MUV # _exptl.entry_id 5MUV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MUV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 K N N ? 3 N N N ? 3 P N N ? 3 R N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5MUV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CA A 1 401 400 CA CA . H 3 ADP A 1 402 401 ADP ADP . I 2 CA B 1 401 400 CA CA . J 3 ADP B 1 402 401 ADP ADP . K 3 ADP I 1 401 401 ADP ADP . L 2 CA I 1 402 400 CA CA . M 2 CA J 1 401 400 CA CA . N 3 ADP J 1 402 401 ADP ADP . O 2 CA K 1 401 400 CA CA . P 3 ADP K 1 402 401 ADP ADP . Q 2 CA L 1 401 400 CA CA . R 3 ADP L 1 402 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . R 3 96.912 113.944 64.371 1 44.43 ? PB ADP 402 L 1 HETATM 2 O O1B ADP . . . R 3 95.563 113.605 63.695 1 42.78 ? O1B ADP 402 L 1 HETATM 3 O O2B ADP . . . R 3 96.649 114.83 65.595 1 45.14 ? O2B ADP 402 L 1 HETATM 4 O O3B ADP . . . R 3 97.616 112.685 64.799 1 39.84 ? O3B ADP 402 L 1 HETATM 5 P PA ADP . . . R 3 98.693 116.081 63.447 1 56.28 ? PA ADP 402 L 1 HETATM 6 O O1A ADP . . . R 3 97.77 117.233 63.571 1 55.55 ? O1A ADP 402 L 1 HETATM 7 O O2A ADP . . . R 3 99.59 116.021 64.697 1 57.28 ? O2A ADP 402 L 1 HETATM 8 O O3A ADP . . . R 3 97.842 114.729 63.33 1 49.36 ? O3A ADP 402 L 1 HETATM 9 O O5' ADP . . . R 3 99.579 116.253 62.145 1 62.7 ? O5' ADP 402 L 1 HETATM 10 C C5' ADP . . . R 3 99.079 115.844 60.856 1 65.54 ? C5' ADP 402 L 1 HETATM 11 C C4' ADP . . . R 3 100.053 116.219 59.772 1 68.46 ? C4' ADP 402 L 1 HETATM 12 O O4' ADP . . . R 3 101.298 115.522 59.983 1 68.89 ? O4' ADP 402 L 1 HETATM 13 C C3' ADP . . . R 3 99.605 115.819 58.371 1 71.89 ? C3' ADP 402 L 1 HETATM 14 O O3' ADP . . . R 3 98.75 116.793 57.784 1 72.92 ? O3' ADP 402 L 1 HETATM 15 C C2' ADP . . . R 3 100.936 115.653 57.637 1 74.12 ? C2' ADP 402 L 1 HETATM 16 O O2' ADP . . . R 3 101.457 116.883 57.144 1 76.72 ? O2' ADP 402 L 1 HETATM 17 C C1' ADP . . . R 3 101.831 115.083 58.745 1 72.54 ? C1' ADP 402 L 1 HETATM 18 N N9 ADP . . . R 3 101.938 113.623 58.751 1 73.5 ? N9 ADP 402 L 1 HETATM 19 C C8 ADP . . . R 3 101.353 112.745 59.626 1 73.44 ? C8 ADP 402 L 1 HETATM 20 N N7 ADP . . . R 3 101.62 111.484 59.384 1 74.57 ? N7 ADP 402 L 1 HETATM 21 C C5 ADP . . . R 3 102.445 111.535 58.265 1 75.05 ? C5 ADP 402 L 1 HETATM 22 C C6 ADP . . . R 3 103.077 110.529 57.503 1 75.86 ? C6 ADP 402 L 1 HETATM 23 N N6 ADP . . . R 3 102.915 109.221 57.72 1 74.89 ? N6 ADP 402 L 1 HETATM 24 N N1 ADP . . . R 3 103.85 110.921 56.462 1 77.6 ? N1 ADP 402 L 1 HETATM 25 C C2 ADP . . . R 3 103.961 112.228 56.198 1 77.85 ? C2 ADP 402 L 1 HETATM 26 N N3 ADP . . . R 3 103.402 113.261 56.833 1 75.97 ? N3 ADP 402 L 1 HETATM 27 C C4 ADP . . . R 3 102.651 112.845 57.869 1 74.5 ? C4 ADP 402 L 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 33 _model_server_stats.element_count 27 #