data_5MVD # _model_server_result.job_id LvYMkhO9tsOWjkgo_hAhaQ _model_server_result.datetime_utc '2024-11-08 16:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MVD # _exptl.entry_id 5MVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MVD _cell.length_a 90.85 _cell.length_b 90.85 _cell.length_c 122.924 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 284 n y N1 C6 ORO sing 285 n y N1 HN1 ORO sing 286 n n C2 O2 ORO doub 287 n n C2 N3 ORO sing 288 n y N3 C4 ORO sing 289 n y N3 HN3 ORO sing 290 n n C4 O4 ORO doub 291 n n C4 C5 ORO sing 292 n y C5 C6 ORO doub 293 n y C5 H5 ORO sing 294 n n C6 C7 ORO sing 295 n n C7 O71 ORO doub 296 n n C7 O72 ORO sing 297 n n O72 HO7 ORO sing 298 n n # _atom_sites.entry_id 5MVD _atom_sites.fract_transf_matrix[1][1] 0.011007 _atom_sites.fract_transf_matrix[1][2] 0.006355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 401 FMN FMN . C 3 ORO A 1 402 402 ORO ORO . D 4 U91 A 1 403 403 U91 HYY . E 5 ACT A 1 404 404 ACT ACT . F 5 ACT A 1 405 405 ACT ACT . G 6 CL A 1 406 406 CL CL . H 6 CL A 1 407 407 CL CL . I 6 CL A 1 408 408 CL CL . J 7 HOH A 1 501 700 HOH HOH . J 7 HOH A 2 502 640 HOH HOH . J 7 HOH A 3 503 707 HOH HOH . J 7 HOH A 4 504 668 HOH HOH . J 7 HOH A 5 505 698 HOH HOH . J 7 HOH A 6 506 685 HOH HOH . J 7 HOH A 7 507 682 HOH HOH . J 7 HOH A 8 508 594 HOH HOH . J 7 HOH A 9 509 620 HOH HOH . J 7 HOH A 10 510 626 HOH HOH . J 7 HOH A 11 511 528 HOH HOH . J 7 HOH A 12 512 665 HOH HOH . J 7 HOH A 13 513 592 HOH HOH . J 7 HOH A 14 514 650 HOH HOH . J 7 HOH A 15 515 631 HOH HOH . J 7 HOH A 16 516 573 HOH HOH . J 7 HOH A 17 517 507 HOH HOH . J 7 HOH A 18 518 579 HOH HOH . J 7 HOH A 19 519 643 HOH HOH . J 7 HOH A 20 520 510 HOH HOH . J 7 HOH A 21 521 663 HOH HOH . J 7 HOH A 22 522 524 HOH HOH . J 7 HOH A 23 523 576 HOH HOH . J 7 HOH A 24 524 633 HOH HOH . J 7 HOH A 25 525 662 HOH HOH . J 7 HOH A 26 526 597 HOH HOH . J 7 HOH A 27 527 638 HOH HOH . J 7 HOH A 28 528 697 HOH HOH . J 7 HOH A 29 529 543 HOH HOH . J 7 HOH A 30 530 511 HOH HOH . J 7 HOH A 31 531 610 HOH HOH . J 7 HOH A 32 532 522 HOH HOH . J 7 HOH A 33 533 552 HOH HOH . J 7 HOH A 34 534 533 HOH HOH . J 7 HOH A 35 535 586 HOH HOH . J 7 HOH A 36 536 684 HOH HOH . J 7 HOH A 37 537 595 HOH HOH . J 7 HOH A 38 538 525 HOH HOH . J 7 HOH A 39 539 670 HOH HOH . J 7 HOH A 40 540 531 HOH HOH . J 7 HOH A 41 541 581 HOH HOH . J 7 HOH A 42 542 657 HOH HOH . J 7 HOH A 43 543 574 HOH HOH . J 7 HOH A 44 544 534 HOH HOH . J 7 HOH A 45 545 611 HOH HOH . J 7 HOH A 46 546 520 HOH HOH . J 7 HOH A 47 547 691 HOH HOH . J 7 HOH A 48 548 553 HOH HOH . J 7 HOH A 49 549 549 HOH HOH . J 7 HOH A 50 550 508 HOH HOH . J 7 HOH A 51 551 636 HOH HOH . J 7 HOH A 52 552 608 HOH HOH . J 7 HOH A 53 553 532 HOH HOH . J 7 HOH A 54 554 715 HOH HOH . J 7 HOH A 55 555 526 HOH HOH . J 7 HOH A 56 556 502 HOH HOH . J 7 HOH A 57 557 602 HOH HOH . J 7 HOH A 58 558 567 HOH HOH . J 7 HOH A 59 559 554 HOH HOH . J 7 HOH A 60 560 529 HOH HOH . J 7 HOH A 61 561 692 HOH HOH . J 7 HOH A 62 562 515 HOH HOH . J 7 HOH A 63 563 587 HOH HOH . J 7 HOH A 64 564 540 HOH HOH . J 7 HOH A 65 565 624 HOH HOH . J 7 HOH A 66 566 564 HOH HOH . J 7 HOH A 67 567 675 HOH HOH . J 7 HOH A 68 568 519 HOH HOH . J 7 HOH A 69 569 523 HOH HOH . J 7 HOH A 70 570 703 HOH HOH . J 7 HOH A 71 571 603 HOH HOH . J 7 HOH A 72 572 701 HOH HOH . J 7 HOH A 73 573 512 HOH HOH . J 7 HOH A 74 574 506 HOH HOH . J 7 HOH A 75 575 618 HOH HOH . J 7 HOH A 76 576 588 HOH HOH . J 7 HOH A 77 577 639 HOH HOH . J 7 HOH A 78 578 509 HOH HOH . J 7 HOH A 79 579 513 HOH HOH . J 7 HOH A 80 580 655 HOH HOH . J 7 HOH A 81 581 627 HOH HOH . J 7 HOH A 82 582 548 HOH HOH . J 7 HOH A 83 583 615 HOH HOH . J 7 HOH A 84 584 558 HOH HOH . J 7 HOH A 85 585 547 HOH HOH . J 7 HOH A 86 586 527 HOH HOH . J 7 HOH A 87 587 535 HOH HOH . J 7 HOH A 88 588 637 HOH HOH . J 7 HOH A 89 589 613 HOH HOH . J 7 HOH A 90 590 646 HOH HOH . J 7 HOH A 91 591 649 HOH HOH . J 7 HOH A 92 592 521 HOH HOH . J 7 HOH A 93 593 580 HOH HOH . J 7 HOH A 94 594 503 HOH HOH . J 7 HOH A 95 595 689 HOH HOH . J 7 HOH A 96 596 600 HOH HOH . J 7 HOH A 97 597 538 HOH HOH . J 7 HOH A 98 598 612 HOH HOH . J 7 HOH A 99 599 504 HOH HOH . J 7 HOH A 100 600 584 HOH HOH . J 7 HOH A 101 601 537 HOH HOH . J 7 HOH A 102 602 642 HOH HOH . J 7 HOH A 103 603 545 HOH HOH . J 7 HOH A 104 604 607 HOH HOH . J 7 HOH A 105 605 575 HOH HOH . J 7 HOH A 106 606 705 HOH HOH . J 7 HOH A 107 607 578 HOH HOH . J 7 HOH A 108 608 723 HOH HOH . J 7 HOH A 109 609 557 HOH HOH . J 7 HOH A 110 610 696 HOH HOH . J 7 HOH A 111 611 673 HOH HOH . J 7 HOH A 112 612 622 HOH HOH . J 7 HOH A 113 613 551 HOH HOH . J 7 HOH A 114 614 599 HOH HOH . J 7 HOH A 115 615 720 HOH HOH . J 7 HOH A 116 616 560 HOH HOH . J 7 HOH A 117 617 634 HOH HOH . J 7 HOH A 118 618 569 HOH HOH . J 7 HOH A 119 619 648 HOH HOH . J 7 HOH A 120 620 539 HOH HOH . J 7 HOH A 121 621 617 HOH HOH . J 7 HOH A 122 622 616 HOH HOH . J 7 HOH A 123 623 562 HOH HOH . J 7 HOH A 124 624 693 HOH HOH . J 7 HOH A 125 625 605 HOH HOH . J 7 HOH A 126 626 674 HOH HOH . J 7 HOH A 127 627 565 HOH HOH . J 7 HOH A 128 628 667 HOH HOH . J 7 HOH A 129 629 556 HOH HOH . J 7 HOH A 130 630 621 HOH HOH . J 7 HOH A 131 631 550 HOH HOH . J 7 HOH A 132 632 708 HOH HOH . J 7 HOH A 133 633 514 HOH HOH . J 7 HOH A 134 634 577 HOH HOH . J 7 HOH A 135 635 516 HOH HOH . J 7 HOH A 136 636 518 HOH HOH . J 7 HOH A 137 637 676 HOH HOH . J 7 HOH A 138 638 635 HOH HOH . J 7 HOH A 139 639 536 HOH HOH . J 7 HOH A 140 640 681 HOH HOH . J 7 HOH A 141 641 719 HOH HOH . J 7 HOH A 142 642 641 HOH HOH . J 7 HOH A 143 643 730 HOH HOH . J 7 HOH A 144 644 583 HOH HOH . J 7 HOH A 145 645 598 HOH HOH . J 7 HOH A 146 646 695 HOH HOH . J 7 HOH A 147 647 542 HOH HOH . J 7 HOH A 148 648 585 HOH HOH . J 7 HOH A 149 649 694 HOH HOH . J 7 HOH A 150 650 572 HOH HOH . J 7 HOH A 151 651 666 HOH HOH . J 7 HOH A 152 652 656 HOH HOH . J 7 HOH A 153 653 541 HOH HOH . J 7 HOH A 154 654 571 HOH HOH . J 7 HOH A 155 655 654 HOH HOH . J 7 HOH A 156 656 591 HOH HOH . J 7 HOH A 157 657 566 HOH HOH . J 7 HOH A 158 658 517 HOH HOH . J 7 HOH A 159 659 544 HOH HOH . J 7 HOH A 160 660 555 HOH HOH . J 7 HOH A 161 661 729 HOH HOH . J 7 HOH A 162 662 632 HOH HOH . J 7 HOH A 163 663 630 HOH HOH . J 7 HOH A 164 664 732 HOH HOH . J 7 HOH A 165 665 644 HOH HOH . J 7 HOH A 166 666 596 HOH HOH . J 7 HOH A 167 667 501 HOH HOH . J 7 HOH A 168 668 559 HOH HOH . J 7 HOH A 169 669 563 HOH HOH . J 7 HOH A 170 670 601 HOH HOH . J 7 HOH A 171 671 546 HOH HOH . J 7 HOH A 172 672 530 HOH HOH . J 7 HOH A 173 673 686 HOH HOH . J 7 HOH A 174 674 589 HOH HOH . J 7 HOH A 175 675 628 HOH HOH . J 7 HOH A 176 676 659 HOH HOH . J 7 HOH A 177 677 680 HOH HOH . J 7 HOH A 178 678 604 HOH HOH . J 7 HOH A 179 679 645 HOH HOH . J 7 HOH A 180 680 728 HOH HOH . J 7 HOH A 181 681 561 HOH HOH . J 7 HOH A 182 682 661 HOH HOH . J 7 HOH A 183 683 625 HOH HOH . J 7 HOH A 184 684 721 HOH HOH . J 7 HOH A 185 685 725 HOH HOH . J 7 HOH A 186 686 658 HOH HOH . J 7 HOH A 187 687 568 HOH HOH . J 7 HOH A 188 688 690 HOH HOH . J 7 HOH A 189 689 582 HOH HOH . J 7 HOH A 190 690 653 HOH HOH . J 7 HOH A 191 691 731 HOH HOH . J 7 HOH A 192 692 629 HOH HOH . J 7 HOH A 193 693 688 HOH HOH . J 7 HOH A 194 694 699 HOH HOH . J 7 HOH A 195 695 593 HOH HOH . J 7 HOH A 196 696 660 HOH HOH . J 7 HOH A 197 697 710 HOH HOH . J 7 HOH A 198 698 664 HOH HOH . J 7 HOH A 199 699 651 HOH HOH . J 7 HOH A 200 700 714 HOH HOH . J 7 HOH A 201 701 677 HOH HOH . J 7 HOH A 202 702 727 HOH HOH . J 7 HOH A 203 703 716 HOH HOH . J 7 HOH A 204 704 712 HOH HOH . J 7 HOH A 205 705 505 HOH HOH . J 7 HOH A 206 706 570 HOH HOH . J 7 HOH A 207 707 709 HOH HOH . J 7 HOH A 208 708 619 HOH HOH . J 7 HOH A 209 709 669 HOH HOH . J 7 HOH A 210 710 614 HOH HOH . J 7 HOH A 211 711 687 HOH HOH . J 7 HOH A 212 712 672 HOH HOH . J 7 HOH A 213 713 678 HOH HOH . J 7 HOH A 214 714 711 HOH HOH . J 7 HOH A 215 715 726 HOH HOH . J 7 HOH A 216 716 683 HOH HOH . J 7 HOH A 217 717 717 HOH HOH . J 7 HOH A 218 718 704 HOH HOH . J 7 HOH A 219 719 733 HOH HOH . J 7 HOH A 220 720 724 HOH HOH . J 7 HOH A 221 721 718 HOH HOH . J 7 HOH A 222 722 652 HOH HOH . J 7 HOH A 223 723 590 HOH HOH . J 7 HOH A 224 724 623 HOH HOH . J 7 HOH A 225 725 606 HOH HOH . J 7 HOH A 226 726 702 HOH HOH . J 7 HOH A 227 727 713 HOH HOH . J 7 HOH A 228 728 671 HOH HOH . J 7 HOH A 229 729 679 HOH HOH . J 7 HOH A 230 730 647 HOH HOH . J 7 HOH A 231 731 706 HOH HOH . J 7 HOH A 232 732 722 HOH HOH . J 7 HOH A 233 733 609 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 3.488 99.174 13.343 1 10.65 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 3.797 97.793 12.921 1 7.36 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 3.758 97.47 11.763 1 8.81 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 4.138 96.867 13.935 1 6.49 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 4.144 97.169 15.301 1 5.11 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 4.395 96.383 16.15 1 8.16 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 3.793 98.537 15.697 1 4.88 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 3.512 99.444 14.779 1 10.2 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 3.131 100.813 15.293 1 12.43 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 3.56 101.815 14.725 1 14.33 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 2.315 100.867 16.254 1 8.91 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #