data_5MVG # _model_server_result.job_id 3yUjOAIfYfxNUUUmV9kK_A _model_server_result.datetime_utc '2025-01-04 06:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5MVG # _exptl.entry_id 5MVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MVG _cell.length_a 70.721 _cell.length_b 70.721 _cell.length_c 171.953 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 136 A CYS 136 1_555 A SG CYS 195 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 B SG CYS 136 B CYS 136 1_555 B SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5MVG _atom_sites.fract_transf_matrix[1][1] 0.01414 _atom_sites.fract_transf_matrix[1][2] 0.008164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 3 HOH A 1 401 3 HOH HOH . D 3 HOH A 2 402 22 HOH HOH . D 3 HOH A 3 403 5 HOH HOH . D 3 HOH A 4 404 61 HOH HOH . D 3 HOH A 5 405 119 HOH HOH . D 3 HOH A 6 406 76 HOH HOH . D 3 HOH A 7 407 13 HOH HOH . D 3 HOH A 8 408 1 HOH HOH . D 3 HOH A 9 409 6 HOH HOH . D 3 HOH A 10 410 76 HOH HOH . D 3 HOH A 11 411 67 HOH HOH . D 3 HOH A 12 412 13 HOH HOH . D 3 HOH A 13 413 142 HOH HOH . D 3 HOH A 14 414 10 HOH HOH . D 3 HOH A 15 415 135 HOH HOH . D 3 HOH A 16 416 71 HOH HOH . D 3 HOH A 17 417 35 HOH HOH . D 3 HOH A 18 418 64 HOH HOH . D 3 HOH A 19 419 120 HOH HOH . D 3 HOH A 20 420 47 HOH HOH . D 3 HOH A 21 421 15 HOH HOH . D 3 HOH A 22 422 72 HOH HOH . D 3 HOH A 23 423 51 HOH HOH . D 3 HOH A 24 424 59 HOH HOH . D 3 HOH A 25 425 56 HOH HOH . D 3 HOH A 26 426 70 HOH HOH . D 3 HOH A 27 427 78 HOH HOH . D 3 HOH A 28 428 47 HOH HOH . D 3 HOH A 29 429 40 HOH HOH . D 3 HOH A 30 430 20 HOH HOH . D 3 HOH A 31 431 122 HOH HOH . D 3 HOH A 32 432 79 HOH HOH . D 3 HOH A 33 433 83 HOH HOH . D 3 HOH A 34 434 104 HOH HOH . D 3 HOH A 35 435 44 HOH HOH . D 3 HOH A 36 436 110 HOH HOH . D 3 HOH A 37 437 20 HOH HOH . D 3 HOH A 38 438 115 HOH HOH . D 3 HOH A 39 439 8 HOH HOH . D 3 HOH A 40 440 101 HOH HOH . D 3 HOH A 41 441 111 HOH HOH . D 3 HOH A 42 442 77 HOH HOH . D 3 HOH A 43 443 62 HOH HOH . D 3 HOH A 44 444 34 HOH HOH . D 3 HOH A 45 445 52 HOH HOH . D 3 HOH A 46 446 125 HOH HOH . D 3 HOH A 47 447 50 HOH HOH . D 3 HOH A 48 448 82 HOH HOH . D 3 HOH A 49 449 6 HOH HOH . D 3 HOH A 50 450 28 HOH HOH . D 3 HOH A 51 451 23 HOH HOH . D 3 HOH A 52 452 16 HOH HOH . D 3 HOH A 53 453 98 HOH HOH . D 3 HOH A 54 454 141 HOH HOH . D 3 HOH A 55 455 38 HOH HOH . D 3 HOH A 56 456 88 HOH HOH . D 3 HOH A 57 457 30 HOH HOH . D 3 HOH A 58 458 131 HOH HOH . D 3 HOH A 59 459 53 HOH HOH . D 3 HOH A 60 460 36 HOH HOH . D 3 HOH A 61 461 102 HOH HOH . D 3 HOH A 62 462 32 HOH HOH . D 3 HOH A 63 463 70 HOH HOH . D 3 HOH A 64 464 63 HOH HOH . D 3 HOH A 65 465 136 HOH HOH . D 3 HOH A 66 466 66 HOH HOH . D 3 HOH A 67 467 98 HOH HOH . D 3 HOH A 68 468 75 HOH HOH . D 3 HOH A 69 469 48 HOH HOH . D 3 HOH A 70 470 89 HOH HOH . D 3 HOH A 71 471 52 HOH HOH . D 3 HOH A 72 472 87 HOH HOH . D 3 HOH A 73 473 144 HOH HOH . D 3 HOH A 74 474 86 HOH HOH . D 3 HOH A 75 475 33 HOH HOH . D 3 HOH A 76 476 42 HOH HOH . D 3 HOH A 77 477 41 HOH HOH . D 3 HOH A 78 478 2 HOH HOH . D 3 HOH A 79 479 95 HOH HOH . D 3 HOH A 80 480 40 HOH HOH . D 3 HOH A 81 481 5 HOH HOH . D 3 HOH A 82 482 79 HOH HOH . D 3 HOH A 83 483 111 HOH HOH . D 3 HOH A 84 484 4 HOH HOH . D 3 HOH A 85 485 95 HOH HOH . D 3 HOH A 86 486 24 HOH HOH . D 3 HOH A 87 487 109 HOH HOH . D 3 HOH A 88 488 22 HOH HOH . D 3 HOH A 89 489 26 HOH HOH . D 3 HOH A 90 490 139 HOH HOH . D 3 HOH A 91 491 74 HOH HOH . D 3 HOH A 92 492 57 HOH HOH . D 3 HOH A 93 493 101 HOH HOH . D 3 HOH A 94 494 138 HOH HOH . D 3 HOH A 95 495 81 HOH HOH . D 3 HOH A 96 496 130 HOH HOH . D 3 HOH A 97 497 55 HOH HOH . D 3 HOH A 98 498 90 HOH HOH . D 3 HOH A 99 499 14 HOH HOH . D 3 HOH A 100 500 117 HOH HOH . D 3 HOH A 101 501 92 HOH HOH . D 3 HOH A 102 502 62 HOH HOH . D 3 HOH A 103 503 65 HOH HOH . D 3 HOH A 104 504 53 HOH HOH . D 3 HOH A 105 505 35 HOH HOH . D 3 HOH A 106 506 109 HOH HOH . D 3 HOH A 107 507 49 HOH HOH . D 3 HOH A 108 508 128 HOH HOH . D 3 HOH A 109 509 87 HOH HOH . D 3 HOH A 110 510 64 HOH HOH . D 3 HOH A 111 511 100 HOH HOH . D 3 HOH A 112 512 112 HOH HOH . D 3 HOH A 113 513 69 HOH HOH . D 3 HOH A 114 514 103 HOH HOH . D 3 HOH A 115 515 100 HOH HOH . E 3 HOH B 1 301 24 HOH HOH . E 3 HOH B 2 302 25 HOH HOH . E 3 HOH B 3 303 29 HOH HOH . E 3 HOH B 4 304 93 HOH HOH . E 3 HOH B 5 305 105 HOH HOH . E 3 HOH B 6 306 8 HOH HOH . E 3 HOH B 7 307 18 HOH HOH . E 3 HOH B 8 308 41 HOH HOH . E 3 HOH B 9 309 132 HOH HOH . E 3 HOH B 10 310 75 HOH HOH . E 3 HOH B 11 311 14 HOH HOH . E 3 HOH B 12 312 34 HOH HOH . E 3 HOH B 13 313 19 HOH HOH . E 3 HOH B 14 314 86 HOH HOH . E 3 HOH B 15 315 31 HOH HOH . E 3 HOH B 16 316 9 HOH HOH . E 3 HOH B 17 317 19 HOH HOH . E 3 HOH B 18 318 71 HOH HOH . E 3 HOH B 19 319 7 HOH HOH . E 3 HOH B 20 320 11 HOH HOH . E 3 HOH B 21 321 3 HOH HOH . E 3 HOH B 22 322 46 HOH HOH . E 3 HOH B 23 323 37 HOH HOH . E 3 HOH B 24 324 72 HOH HOH . E 3 HOH B 25 325 60 HOH HOH . E 3 HOH B 26 326 39 HOH HOH . E 3 HOH B 27 327 68 HOH HOH . E 3 HOH B 28 328 45 HOH HOH . E 3 HOH B 29 329 68 HOH HOH . E 3 HOH B 30 330 94 HOH HOH . E 3 HOH B 31 331 61 HOH HOH . E 3 HOH B 32 332 81 HOH HOH . E 3 HOH B 33 333 97 HOH HOH . E 3 HOH B 34 334 106 HOH HOH . E 3 HOH B 35 335 4 HOH HOH . E 3 HOH B 36 336 49 HOH HOH . E 3 HOH B 37 337 15 HOH HOH . E 3 HOH B 38 338 80 HOH HOH . E 3 HOH B 39 339 104 HOH HOH . E 3 HOH B 40 340 80 HOH HOH . E 3 HOH B 41 341 60 HOH HOH . E 3 HOH B 42 342 54 HOH HOH . E 3 HOH B 43 343 31 HOH HOH . E 3 HOH B 44 344 137 HOH HOH . E 3 HOH B 45 345 12 HOH HOH . E 3 HOH B 46 346 18 HOH HOH . E 3 HOH B 47 347 43 HOH HOH . E 3 HOH B 48 348 17 HOH HOH . E 3 HOH B 49 349 74 HOH HOH . E 3 HOH B 50 350 73 HOH HOH . E 3 HOH B 51 351 84 HOH HOH . E 3 HOH B 52 352 21 HOH HOH . E 3 HOH B 53 353 57 HOH HOH . E 3 HOH B 54 354 48 HOH HOH . E 3 HOH B 55 355 26 HOH HOH . E 3 HOH B 56 356 33 HOH HOH . E 3 HOH B 57 357 114 HOH HOH . E 3 HOH B 58 358 108 HOH HOH . E 3 HOH B 59 359 116 HOH HOH . E 3 HOH B 60 360 123 HOH HOH . E 3 HOH B 61 361 16 HOH HOH . E 3 HOH B 62 362 27 HOH HOH . E 3 HOH B 63 363 21 HOH HOH . E 3 HOH B 64 364 11 HOH HOH . E 3 HOH B 65 365 94 HOH HOH . E 3 HOH B 66 366 36 HOH HOH . E 3 HOH B 67 367 1 HOH HOH . E 3 HOH B 68 368 133 HOH HOH . E 3 HOH B 69 369 58 HOH HOH . E 3 HOH B 70 370 112 HOH HOH . E 3 HOH B 71 371 106 HOH HOH . E 3 HOH B 72 372 9 HOH HOH . E 3 HOH B 73 373 23 HOH HOH . E 3 HOH B 74 374 127 HOH HOH . E 3 HOH B 75 375 73 HOH HOH . E 3 HOH B 76 376 99 HOH HOH . E 3 HOH B 77 377 121 HOH HOH . E 3 HOH B 78 378 59 HOH HOH . E 3 HOH B 79 379 140 HOH HOH . E 3 HOH B 80 380 38 HOH HOH . E 3 HOH B 81 381 54 HOH HOH . E 3 HOH B 82 382 92 HOH HOH . E 3 HOH B 83 383 107 HOH HOH . E 3 HOH B 84 384 66 HOH HOH . E 3 HOH B 85 385 102 HOH HOH . E 3 HOH B 86 386 43 HOH HOH . E 3 HOH B 87 387 28 HOH HOH . E 3 HOH B 88 388 118 HOH HOH . E 3 HOH B 89 389 44 HOH HOH . E 3 HOH B 90 390 2 HOH HOH . E 3 HOH B 91 391 113 HOH HOH . E 3 HOH B 92 392 50 HOH HOH . E 3 HOH B 93 393 55 HOH HOH . E 3 HOH B 94 394 17 HOH HOH . E 3 HOH B 95 395 51 HOH HOH . E 3 HOH B 96 396 113 HOH HOH . E 3 HOH B 97 397 93 HOH HOH . E 3 HOH B 98 398 65 HOH HOH . E 3 HOH B 99 399 27 HOH HOH . E 3 HOH B 100 400 78 HOH HOH . E 3 HOH B 101 401 63 HOH HOH . E 3 HOH B 102 402 10 HOH HOH . E 3 HOH B 103 403 90 HOH HOH . E 3 HOH B 104 404 67 HOH HOH . E 3 HOH B 105 405 45 HOH HOH . E 3 HOH B 106 406 105 HOH HOH . E 3 HOH B 107 407 69 HOH HOH . E 3 HOH B 108 408 77 HOH HOH . E 3 HOH B 109 409 129 HOH HOH . E 3 HOH B 110 410 145 HOH HOH . E 3 HOH B 111 411 96 HOH HOH . E 3 HOH B 112 412 85 HOH HOH . E 3 HOH B 113 413 96 HOH HOH . E 3 HOH B 114 414 84 HOH HOH . E 3 HOH B 115 415 30 HOH HOH . E 3 HOH B 116 416 56 HOH HOH . E 3 HOH B 117 417 82 HOH HOH . E 3 HOH B 118 418 83 HOH HOH . E 3 HOH B 119 419 25 HOH HOH . E 3 HOH B 120 420 58 HOH HOH . E 3 HOH B 121 421 42 HOH HOH . E 3 HOH B 122 422 37 HOH HOH . E 3 HOH B 123 423 107 HOH HOH . E 3 HOH B 124 424 7 HOH HOH . E 3 HOH B 125 425 91 HOH HOH . E 3 HOH B 126 426 91 HOH HOH . E 3 HOH B 127 427 97 HOH HOH . E 3 HOH B 128 428 143 HOH HOH . E 3 HOH B 129 429 108 HOH HOH . E 3 HOH B 130 430 126 HOH HOH . E 3 HOH B 131 431 46 HOH HOH . E 3 HOH B 132 432 103 HOH HOH . E 3 HOH B 133 433 39 HOH HOH . E 3 HOH B 134 434 32 HOH HOH . E 3 HOH B 135 435 124 HOH HOH . E 3 HOH B 136 436 89 HOH HOH . E 3 HOH B 137 437 29 HOH HOH . E 3 HOH B 138 438 110 HOH HOH . E 3 HOH B 139 439 99 HOH HOH . E 3 HOH B 140 440 88 HOH HOH . E 3 HOH B 141 441 134 HOH HOH . E 3 HOH B 142 442 85 HOH HOH . E 3 HOH B 143 443 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 32.19 -52.576 -2.797 1 73.94 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 32.349 -52.657 -1.386 1 75.43 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 33.176 -53.468 -3.516 1 72.75 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 34.505 -53.201 -3.058 1 72.93 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 32.863 -54.938 -3.366 1 71.66 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 33.659 -55.71 -4.256 1 71.39 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #