data_5MVL # _model_server_result.job_id v3VQhJYXG4TViY68mYtUkA _model_server_result.datetime_utc '2024-11-01 01:32:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5MVL # _exptl.entry_id 5MVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MVL _cell.length_a 43.517 _cell.length_b 43.517 _cell.length_c 60.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 1 A DC 1 1_555 A P BRU 2 A BRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale2 A O3' BRU 2 A BRU 2 1_555 A P DA 3 A DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale3 B O3' DC 1 B DC 1 1_555 B P BRU 2 B BRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale4 B O3' BRU 2 B BRU 2 1_555 B P DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? metalc ? metalc1 C MG MG . A MG 101 1_555 D O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 C MG MG . A MG 101 1_555 D O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 C MG MG . A MG 101 1_555 D O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 C MG MG . A MG 101 1_555 D O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 C MG MG . A MG 101 1_555 D O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 C MG MG . A MG 101 1_555 D O HOH . A HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 BRU 2 A BRU 2 1_555 B N1 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 BRU 2 A BRU 2 1_555 B N6 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 3 A DA 3 1_555 B N3 DT 10 B DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 3 A DA 3 1_555 B O4 DT 10 B DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 A DC 4 1_555 B N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 A DC 4 1_555 B O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 A DC 4 1_555 B N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 5 A DG 5 1_555 B N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 5 A DG 5 1_555 B O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 5 A DG 5 1_555 B N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 A DC 6 1_555 B N1 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 A DC 6 1_555 B O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 A DC 6 1_555 B N2 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 7 A DG 7 1_555 B N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 7 A DG 7 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 7 A DG 7 1_555 B N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 8 A DC 8 1_555 B N1 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 8 A DC 8 1_555 B O6 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 8 A DC 8 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 B O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 B N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DT 10 A DT 10 1_555 B N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 DT 10 A DT 10 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DA 11 A DA 11 1_555 B N3 BRU 2 B BRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 DA 11 A DA 11 1_555 B O4 BRU 2 B BRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MVL _atom_sites.fract_transf_matrix[1][1] 0.02298 _atom_sites.fract_transf_matrix[1][2] 0.013267 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 1 MG MG . D 3 HOH A 1 201 51 HOH HOH . D 3 HOH A 2 202 62 HOH HOH . D 3 HOH A 3 203 6 HOH HOH . D 3 HOH A 4 204 69 HOH HOH . D 3 HOH A 5 205 17 HOH HOH . D 3 HOH A 6 206 44 HOH HOH . D 3 HOH A 7 207 63 HOH HOH . D 3 HOH A 8 208 32 HOH HOH . D 3 HOH A 9 209 1 HOH HOH . D 3 HOH A 10 210 28 HOH HOH . D 3 HOH A 11 211 38 HOH HOH . D 3 HOH A 12 212 5 HOH HOH . D 3 HOH A 13 213 15 HOH HOH . D 3 HOH A 14 214 21 HOH HOH . D 3 HOH A 15 215 9 HOH HOH . D 3 HOH A 16 216 41 HOH HOH . D 3 HOH A 17 217 25 HOH HOH . D 3 HOH A 18 218 11 HOH HOH . D 3 HOH A 19 219 8 HOH HOH . D 3 HOH A 20 220 42 HOH HOH . D 3 HOH A 21 221 65 HOH HOH . D 3 HOH A 22 222 3 HOH HOH . D 3 HOH A 23 223 61 HOH HOH . D 3 HOH A 24 224 75 HOH HOH . D 3 HOH A 25 225 37 HOH HOH . D 3 HOH A 26 226 52 HOH HOH . D 3 HOH A 27 227 58 HOH HOH . D 3 HOH A 28 228 14 HOH HOH . D 3 HOH A 29 229 12 HOH HOH . D 3 HOH A 30 230 67 HOH HOH . D 3 HOH A 31 231 43 HOH HOH . D 3 HOH A 32 232 40 HOH HOH . D 3 HOH A 33 233 2 HOH HOH . D 3 HOH A 34 234 24 HOH HOH . D 3 HOH A 35 235 54 HOH HOH . D 3 HOH A 36 236 55 HOH HOH . D 3 HOH A 37 237 53 HOH HOH . D 3 HOH A 38 238 47 HOH HOH . D 3 HOH A 39 239 71 HOH HOH . D 3 HOH A 40 240 33 HOH HOH . D 3 HOH A 41 241 7 HOH HOH . E 3 HOH B 1 101 70 HOH HOH . E 3 HOH B 2 102 56 HOH HOH . E 3 HOH B 3 103 76 HOH HOH . E 3 HOH B 4 104 59 HOH HOH . E 3 HOH B 5 105 45 HOH HOH . E 3 HOH B 6 106 13 HOH HOH . E 3 HOH B 7 107 57 HOH HOH . E 3 HOH B 8 108 31 HOH HOH . E 3 HOH B 9 109 19 HOH HOH . E 3 HOH B 10 110 36 HOH HOH . E 3 HOH B 11 111 46 HOH HOH . E 3 HOH B 12 112 18 HOH HOH . E 3 HOH B 13 113 30 HOH HOH . E 3 HOH B 14 114 23 HOH HOH . E 3 HOH B 15 115 48 HOH HOH . E 3 HOH B 16 116 35 HOH HOH . E 3 HOH B 17 117 50 HOH HOH . E 3 HOH B 18 118 4 HOH HOH . E 3 HOH B 19 119 16 HOH HOH . E 3 HOH B 20 120 68 HOH HOH . E 3 HOH B 21 121 34 HOH HOH . E 3 HOH B 22 122 20 HOH HOH . E 3 HOH B 23 123 10 HOH HOH . E 3 HOH B 24 124 22 HOH HOH . E 3 HOH B 25 125 26 HOH HOH . E 3 HOH B 26 126 49 HOH HOH . E 3 HOH B 27 127 72 HOH HOH . E 3 HOH B 28 128 39 HOH HOH . E 3 HOH B 29 129 29 HOH HOH . E 3 HOH B 30 130 73 HOH HOH . E 3 HOH B 31 131 74 HOH HOH . E 3 HOH B 32 132 64 HOH HOH . E 3 HOH B 33 133 66 HOH HOH . E 3 HOH B 34 134 27 HOH HOH . E 3 HOH B 35 135 60 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.514 _atom_site.Cartn_y 2.189 _atom_site.Cartn_z -6.799 _atom_site.occupancy 0.51 _atom_site.B_iso_or_equiv 23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #