data_5MVM # _model_server_result.job_id RFyNq_InxH1_rJ7bzeGTOA _model_server_result.datetime_utc '2024-11-15 04:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":505}' # _entry.id 5MVM # _exptl.entry_id 5MVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.72 _cell.angle_gamma 90 _cell.entry_id 5MVM _cell.length_a 181.76 _cell.length_b 132.51 _cell.length_c 160.52 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 N N N ? 5 U N N ? 5 CA N N ? 5 MA N N ? 5 VA N N ? 5 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 B O PRO 68 B PRO 68 1_555 U NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc3 B O ILE 71 B ILE 71 1_555 U NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 C O PRO 68 C PRO 68 1_555 CA NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 CA NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc6 D O PRO 68 D PRO 68 1_555 MA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc7 D O ILE 71 D ILE 71 1_555 MA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 E O PRO 68 E PRO 68 1_555 AB NA NA . E NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 AB NA NA . E NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MVM _atom_sites.fract_transf_matrix[1][1] 0.005502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 501 501 LMT LMT . G 3 ACT A 1 502 401 ACT ACT . H 4 CL A 1 503 402 CL CL . I 3 ACT A 1 504 403 ACT ACT . J 5 NA A 1 505 404 NA NA . K 6 PLC A 1 506 406 PLC PLC . L 6 PLC A 1 507 407 PLC PLC . M 6 PLC A 1 508 408 PLC PLC . N 5 NA A 1 509 405 NA NA . O 7 PFL A 1 510 1 PFL PFL . P 7 PFL A 1 511 1 PFL PFL . Q 2 LMT B 1 501 501 LMT LMT . R 3 ACT B 1 502 401 ACT ACT . S 4 CL B 1 503 402 CL CL . T 3 ACT B 1 504 403 ACT ACT . U 5 NA B 1 505 404 NA NA . V 6 PLC B 1 506 406 PLC PLC . W 6 PLC B 1 507 407 PLC PLC . X 6 PLC B 1 508 408 PLC PLC . Y 3 ACT B 1 509 403 ACT ACT . Z 7 PFL B 1 510 1 PFL PFL . AA 3 ACT C 1 401 401 ACT ACT . BA 4 CL C 1 402 402 CL CL . CA 5 NA C 1 403 404 NA NA . DA 6 PLC C 1 404 406 PLC PLC . EA 6 PLC C 1 405 407 PLC PLC . FA 6 PLC C 1 406 408 PLC PLC . GA 2 LMT C 1 407 501 LMT LMT . HA 7 PFL C 1 408 1 PFL PFL . IA 2 LMT D 1 401 319 LMT LMT . JA 3 ACT D 1 402 401 ACT ACT . KA 4 CL D 1 403 402 CL CL . LA 3 ACT D 1 404 403 ACT ACT . MA 5 NA D 1 405 404 NA NA . NA 6 PLC D 1 406 406 PLC PLC . OA 6 PLC D 1 407 407 PLC PLC . PA 6 PLC D 1 408 408 PLC PLC . QA 3 ACT D 1 409 403 ACT ACT . RA 2 LMT E 1 401 411 LMT LMT . SA 2 LMT E 1 402 501 LMT LMT . TA 3 ACT E 1 403 401 ACT ACT . UA 4 CL E 1 404 402 CL CL . VA 5 NA E 1 405 404 NA NA . WA 6 PLC E 1 406 406 PLC PLC . XA 6 PLC E 1 407 407 PLC PLC . YA 6 PLC E 1 408 408 PLC PLC . ZA 7 PFL E 1 409 1 PFL PFL . AB 5 NA E 1 410 1 NA NA . BB 8 HOH A 1 601 73 HOH HOH . BB 8 HOH A 2 602 22 HOH HOH . BB 8 HOH A 3 603 95 HOH HOH . BB 8 HOH A 4 604 96 HOH HOH . BB 8 HOH A 5 605 46 HOH HOH . BB 8 HOH A 6 606 54 HOH HOH . BB 8 HOH A 7 607 37 HOH HOH . BB 8 HOH A 8 608 40 HOH HOH . BB 8 HOH A 9 609 59 HOH HOH . BB 8 HOH A 10 610 101 HOH HOH . BB 8 HOH A 11 611 23 HOH HOH . BB 8 HOH A 12 612 35 HOH HOH . BB 8 HOH A 13 613 41 HOH HOH . BB 8 HOH A 14 614 93 HOH HOH . BB 8 HOH A 15 615 323 HOH HOH . BB 8 HOH A 16 616 83 HOH HOH . BB 8 HOH A 17 617 3 HOH HOH . BB 8 HOH A 18 618 21 HOH HOH . BB 8 HOH A 19 619 9 HOH HOH . BB 8 HOH A 20 620 3 HOH HOH . BB 8 HOH A 21 621 91 HOH HOH . BB 8 HOH A 22 622 52 HOH HOH . BB 8 HOH A 23 623 47 HOH HOH . BB 8 HOH A 24 624 51 HOH HOH . BB 8 HOH A 25 625 22 HOH HOH . BB 8 HOH A 26 626 34 HOH HOH . BB 8 HOH A 27 627 324 HOH HOH . BB 8 HOH A 28 628 322 HOH HOH . BB 8 HOH A 29 629 107 HOH HOH . BB 8 HOH A 30 630 68 HOH HOH . BB 8 HOH A 31 631 3 HOH HOH . BB 8 HOH A 32 632 76 HOH HOH . BB 8 HOH A 33 633 32 HOH HOH . BB 8 HOH A 34 634 87 HOH HOH . BB 8 HOH A 35 635 11 HOH HOH . BB 8 HOH A 36 636 94 HOH HOH . BB 8 HOH A 37 637 66 HOH HOH . BB 8 HOH A 38 638 31 HOH HOH . BB 8 HOH A 39 639 16 HOH HOH . BB 8 HOH A 40 640 60 HOH HOH . BB 8 HOH A 41 641 2 HOH HOH . BB 8 HOH A 42 642 3 HOH HOH . BB 8 HOH A 43 643 38 HOH HOH . BB 8 HOH A 44 644 15 HOH HOH . BB 8 HOH A 45 645 10 HOH HOH . CB 8 HOH B 1 601 26 HOH HOH . CB 8 HOH B 2 602 3 HOH HOH . CB 8 HOH B 3 603 84 HOH HOH . CB 8 HOH B 4 604 13 HOH HOH . CB 8 HOH B 5 605 56 HOH HOH . CB 8 HOH B 6 606 13 HOH HOH . CB 8 HOH B 7 607 81 HOH HOH . CB 8 HOH B 8 608 7 HOH HOH . CB 8 HOH B 9 609 14 HOH HOH . CB 8 HOH B 10 610 26 HOH HOH . CB 8 HOH B 11 611 106 HOH HOH . CB 8 HOH B 12 612 4 HOH HOH . CB 8 HOH B 13 613 10 HOH HOH . CB 8 HOH B 14 614 4 HOH HOH . CB 8 HOH B 15 615 61 HOH HOH . CB 8 HOH B 16 616 45 HOH HOH . CB 8 HOH B 17 617 25 HOH HOH . CB 8 HOH B 18 618 12 HOH HOH . CB 8 HOH B 19 619 78 HOH HOH . CB 8 HOH B 20 620 85 HOH HOH . CB 8 HOH B 21 621 103 HOH HOH . CB 8 HOH B 22 622 65 HOH HOH . CB 8 HOH B 23 623 32 HOH HOH . CB 8 HOH B 24 624 31 HOH HOH . CB 8 HOH B 25 625 19 HOH HOH . CB 8 HOH B 26 626 1 HOH HOH . CB 8 HOH B 27 627 325 HOH HOH . CB 8 HOH B 28 628 24 HOH HOH . CB 8 HOH B 29 629 99 HOH HOH . CB 8 HOH B 30 630 326 HOH HOH . CB 8 HOH B 31 631 52 HOH HOH . CB 8 HOH B 32 632 12 HOH HOH . CB 8 HOH B 33 633 4 HOH HOH . CB 8 HOH B 34 634 89 HOH HOH . CB 8 HOH B 35 635 2 HOH HOH . CB 8 HOH B 36 636 74 HOH HOH . CB 8 HOH B 37 637 78 HOH HOH . CB 8 HOH B 38 638 21 HOH HOH . CB 8 HOH B 39 639 11 HOH HOH . CB 8 HOH B 40 640 4 HOH HOH . CB 8 HOH B 41 641 90 HOH HOH . CB 8 HOH B 42 642 58 HOH HOH . CB 8 HOH B 43 643 26 HOH HOH . DB 8 HOH C 1 501 88 HOH HOH . DB 8 HOH C 2 502 27 HOH HOH . DB 8 HOH C 3 503 9 HOH HOH . DB 8 HOH C 4 504 36 HOH HOH . DB 8 HOH C 5 505 43 HOH HOH . DB 8 HOH C 6 506 38 HOH HOH . DB 8 HOH C 7 507 76 HOH HOH . DB 8 HOH C 8 508 50 HOH HOH . DB 8 HOH C 9 509 1 HOH HOH . DB 8 HOH C 10 510 77 HOH HOH . DB 8 HOH C 11 511 98 HOH HOH . DB 8 HOH C 12 512 15 HOH HOH . DB 8 HOH C 13 513 45 HOH HOH . DB 8 HOH C 14 514 10 HOH HOH . DB 8 HOH C 15 515 44 HOH HOH . DB 8 HOH C 16 516 30 HOH HOH . DB 8 HOH C 17 517 5 HOH HOH . DB 8 HOH C 18 518 1 HOH HOH . DB 8 HOH C 19 519 1 HOH HOH . DB 8 HOH C 20 520 24 HOH HOH . DB 8 HOH C 21 521 13 HOH HOH . DB 8 HOH C 22 522 1 HOH HOH . DB 8 HOH C 23 523 20 HOH HOH . DB 8 HOH C 24 524 28 HOH HOH . DB 8 HOH C 25 525 11 HOH HOH . DB 8 HOH C 26 526 63 HOH HOH . DB 8 HOH C 27 527 322 HOH HOH . DB 8 HOH C 28 528 77 HOH HOH . DB 8 HOH C 29 529 10 HOH HOH . DB 8 HOH C 30 530 7 HOH HOH . DB 8 HOH C 31 531 1 HOH HOH . DB 8 HOH C 32 532 81 HOH HOH . DB 8 HOH C 33 533 16 HOH HOH . DB 8 HOH C 34 534 30 HOH HOH . EB 8 HOH D 1 501 48 HOH HOH . EB 8 HOH D 2 502 71 HOH HOH . EB 8 HOH D 3 503 49 HOH HOH . EB 8 HOH D 4 504 68 HOH HOH . EB 8 HOH D 5 505 72 HOH HOH . EB 8 HOH D 6 506 79 HOH HOH . EB 8 HOH D 7 507 36 HOH HOH . EB 8 HOH D 8 508 6 HOH HOH . EB 8 HOH D 9 509 97 HOH HOH . EB 8 HOH D 10 510 33 HOH HOH . EB 8 HOH D 11 511 17 HOH HOH . EB 8 HOH D 12 512 75 HOH HOH . EB 8 HOH D 13 513 8 HOH HOH . EB 8 HOH D 14 514 1 HOH HOH . EB 8 HOH D 15 515 67 HOH HOH . EB 8 HOH D 16 516 39 HOH HOH . EB 8 HOH D 17 517 105 HOH HOH . EB 8 HOH D 18 518 100 HOH HOH . EB 8 HOH D 19 519 3 HOH HOH . EB 8 HOH D 20 520 60 HOH HOH . EB 8 HOH D 21 521 55 HOH HOH . EB 8 HOH D 22 522 62 HOH HOH . EB 8 HOH D 23 523 33 HOH HOH . EB 8 HOH D 24 524 53 HOH HOH . EB 8 HOH D 25 525 25 HOH HOH . EB 8 HOH D 26 526 82 HOH HOH . EB 8 HOH D 27 527 66 HOH HOH . EB 8 HOH D 28 528 4 HOH HOH . EB 8 HOH D 29 529 17 HOH HOH . EB 8 HOH D 30 530 2 HOH HOH . EB 8 HOH D 31 531 23 HOH HOH . EB 8 HOH D 32 532 29 HOH HOH . EB 8 HOH D 33 533 14 HOH HOH . EB 8 HOH D 34 534 326 HOH HOH . EB 8 HOH D 35 535 19 HOH HOH . EB 8 HOH D 36 536 74 HOH HOH . EB 8 HOH D 37 537 48 HOH HOH . EB 8 HOH D 38 538 104 HOH HOH . EB 8 HOH D 39 539 28 HOH HOH . EB 8 HOH D 40 540 2 HOH HOH . EB 8 HOH D 41 541 8 HOH HOH . EB 8 HOH D 42 542 25 HOH HOH . FB 8 HOH E 1 501 92 HOH HOH . FB 8 HOH E 2 502 20 HOH HOH . FB 8 HOH E 3 503 5 HOH HOH . FB 8 HOH E 4 504 42 HOH HOH . FB 8 HOH E 5 505 80 HOH HOH . FB 8 HOH E 6 506 18 HOH HOH . FB 8 HOH E 7 507 57 HOH HOH . FB 8 HOH E 8 508 69 HOH HOH . FB 8 HOH E 9 509 11 HOH HOH . FB 8 HOH E 10 510 83 HOH HOH . FB 8 HOH E 11 511 46 HOH HOH . FB 8 HOH E 12 512 2 HOH HOH . FB 8 HOH E 13 513 2 HOH HOH . FB 8 HOH E 14 514 102 HOH HOH . FB 8 HOH E 15 515 17 HOH HOH . FB 8 HOH E 16 516 65 HOH HOH . FB 8 HOH E 17 517 5 HOH HOH . FB 8 HOH E 18 518 64 HOH HOH . FB 8 HOH E 19 519 70 HOH HOH . FB 8 HOH E 20 520 15 HOH HOH . FB 8 HOH E 21 521 6 HOH HOH . FB 8 HOH E 22 522 18 HOH HOH . FB 8 HOH E 23 523 67 HOH HOH . FB 8 HOH E 24 524 16 HOH HOH . FB 8 HOH E 25 525 325 HOH HOH . FB 8 HOH E 26 526 37 HOH HOH . FB 8 HOH E 27 527 328 HOH HOH . FB 8 HOH E 28 528 9 HOH HOH . FB 8 HOH E 29 529 47 HOH HOH . FB 8 HOH E 30 530 86 HOH HOH . FB 8 HOH E 31 531 75 HOH HOH . FB 8 HOH E 32 532 29 HOH HOH . FB 8 HOH E 33 533 326 HOH HOH . FB 8 HOH E 34 534 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 5 _atom_site.Cartn_x 17.32 _atom_site.Cartn_y -25.646 _atom_site.Cartn_z 2.408 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.56 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 505 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #