data_5MVN # _model_server_result.job_id 9N0nqjRaHshxet4CyM4KoA _model_server_result.datetime_utc '2024-11-04 22:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":401}' # _entry.id 5MVN # _exptl.entry_id 5MVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.5 _cell.angle_gamma 90 _cell.entry_id 5MVN _cell.length_a 181.229 _cell.length_b 132.474 _cell.length_c 159.759 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 CA N N ? 3 DA N N ? 3 JA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 UA N N ? 3 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 B O PRO 68 B PRO 68 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 B O ILE 71 B ILE 71 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C O PRO 68 C PRO 68 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc6 C O ILE 71 C ILE 71 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc7 D O PRO 68 D PRO 68 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc8 D O ILE 71 D ILE 71 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 XA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 379 n n C1 O3P PLC sing 380 n n C1 H11 PLC sing 381 n n C1 H12 PLC sing 382 n n C2 C3 PLC sing 383 n n C2 O2 PLC sing 384 n n C2 H2 PLC sing 385 n n C3 O3 PLC sing 386 n n C3 H31 PLC sing 387 n n C3 H32 PLC sing 388 n n C4 C5 PLC sing 389 n n C4 O4P PLC sing 390 n n C4 H41 PLC sing 391 n n C4 H42 PLC sing 392 n n C5 N PLC sing 393 n n C5 H51 PLC sing 394 n n C5 H52 PLC sing 395 n n C6 N PLC sing 396 n n C6 H61 PLC sing 397 n n C6 H62 PLC sing 398 n n C6 H63 PLC sing 399 n n C7 N PLC sing 400 n n C7 H71 PLC sing 401 n n C7 H72 PLC sing 402 n n C7 H73 PLC sing 403 n n C8 N PLC sing 404 n n C8 H81 PLC sing 405 n n C8 H82 PLC sing 406 n n C8 H83 PLC sing 407 n n C' C1' PLC sing 408 n n C' O' PLC doub 409 n n C' O2 PLC sing 410 n n C1' C2' PLC sing 411 n n C1' "H1'1" PLC sing 412 n n C1' "H1'2" PLC sing 413 n n C2' C3' PLC sing 414 n n C2' "H2'1" PLC sing 415 n n C2' "H2'2" PLC sing 416 n n C3' C4' PLC sing 417 n n C3' "H3'1" PLC sing 418 n n C3' "H3'2" PLC sing 419 n n C4' C5' PLC sing 420 n n C4' "H4'1" PLC sing 421 n n C4' "H4'2" PLC sing 422 n n C5' C6' PLC sing 423 n n C5' "H5'1" PLC sing 424 n n C5' "H5'2" PLC sing 425 n n C6' C7' PLC sing 426 n n C6' "H6'1" PLC sing 427 n n C6' "H6'2" PLC sing 428 n n C7' C8' PLC sing 429 n n C7' "H7'1" PLC sing 430 n n C7' "H7'2" PLC sing 431 n n C8' C9' PLC sing 432 n n C8' "H8'1" PLC sing 433 n n C8' "H8'2" PLC sing 434 n n C9' CA' PLC sing 435 n n C9' "H9'1" PLC sing 436 n n C9' "H9'2" PLC sing 437 n n CA' CB' PLC sing 438 n n CA' "HT'1" PLC sing 439 n n CA' "HT'2" PLC sing 440 n n CB' "HE'1" PLC sing 441 n n CB' "HE'2" PLC sing 442 n n CB' "HE'3" PLC sing 443 n n CB C1B PLC sing 444 n n CB OB PLC doub 445 n n CB O3 PLC sing 446 n n C1B C2B PLC sing 447 n n C1B H1A1 PLC sing 448 n n C1B H1A2 PLC sing 449 n n C2B C3B PLC sing 450 n n C2B H2A1 PLC sing 451 n n C2B H2A2 PLC sing 452 n n C3B C4B PLC sing 453 n n C3B H3A1 PLC sing 454 n n C3B H3A2 PLC sing 455 n n C4B C5B PLC sing 456 n n C4B H4A1 PLC sing 457 n n C4B H4A2 PLC sing 458 n n C5B C6B PLC sing 459 n n C5B H5A1 PLC sing 460 n n C5B H5A2 PLC sing 461 n n C6B C7B PLC sing 462 n n C6B H6A1 PLC sing 463 n n C6B H6A2 PLC sing 464 n n C7B C8B PLC sing 465 n n C7B H7A1 PLC sing 466 n n C7B H7A2 PLC sing 467 n n C8B C9B PLC sing 468 n n C8B H8A1 PLC sing 469 n n C8B H8A2 PLC sing 470 n n C9B CAA PLC sing 471 n n C9B H9A1 PLC sing 472 n n C9B H9A2 PLC sing 473 n n CAA CBA PLC sing 474 n n CAA HTA1 PLC sing 475 n n CAA HTA2 PLC sing 476 n n CBA HEA1 PLC sing 477 n n CBA HEA2 PLC sing 478 n n CBA HEA3 PLC sing 479 n n O1P P PLC doub 480 n n O2P P PLC sing 481 n n O2P HOP2 PLC sing 482 n n O3P P PLC sing 483 n n O4P P PLC sing 484 n n # _atom_sites.entry_id 5MVN _atom_sites.fract_transf_matrix[1][1] 0.005518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001223 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 403 PLC PLC . I 3 PLC A 1 404 404 PLC PLC . J 4 CL A 1 405 405 CL CL . K 4 CL A 1 406 406 CL CL . L 4 CL A 1 407 407 CL CL . M 5 NA A 1 408 408 NA NA . N 5 NA A 1 409 409 NA NA . O 2 ACT A 1 410 410 ACT ACT . P 6 LMT A 1 411 411 LMT LMT . Q 6 LMT A 1 412 412 LMT LMT . R 3 PLC A 1 413 403 PLC PLC . S 2 ACT B 1 401 401 ACT ACT . T 3 PLC B 1 402 402 PLC PLC . U 3 PLC B 1 403 403 PLC PLC . V 3 PLC B 1 404 404 PLC PLC . W 4 CL B 1 405 405 CL CL . X 5 NA B 1 406 406 NA NA . Y 2 ACT B 1 407 407 ACT ACT . Z 6 LMT B 1 408 408 LMT LMT . AA 2 ACT B 1 409 401 ACT ACT . BA 7 PFL B 1 410 1 PFL PFL . CA 3 PLC C 1 401 402 PLC PLC . DA 3 PLC C 1 402 404 PLC PLC . EA 4 CL C 1 403 405 CL CL . FA 5 NA C 1 404 406 NA NA . GA 2 ACT C 1 405 407 ACT ACT . HA 6 LMT C 1 406 408 LMT LMT . IA 7 PFL C 1 407 1 PFL PFL . JA 3 PLC D 1 401 403 PLC PLC . KA 2 ACT D 1 402 401 ACT ACT . LA 3 PLC D 1 403 402 PLC PLC . MA 3 PLC D 1 404 403 PLC PLC . NA 3 PLC D 1 405 404 PLC PLC . OA 4 CL D 1 406 405 CL CL . PA 5 NA D 1 407 406 NA NA . QA 2 ACT D 1 408 407 ACT ACT . RA 6 LMT D 1 409 408 LMT LMT . SA 7 PFL D 1 410 1 PFL PFL . TA 2 ACT E 1 401 401 ACT ACT . UA 3 PLC E 1 402 402 PLC PLC . VA 3 PLC E 1 403 404 PLC PLC . WA 4 CL E 1 404 405 CL CL . XA 5 NA E 1 405 406 NA NA . YA 2 ACT E 1 406 407 ACT ACT . ZA 6 LMT E 1 407 408 LMT LMT . AB 7 PFL E 1 408 1 PFL PFL . BB 8 HOH A 1 501 14 HOH HOH . BB 8 HOH A 2 502 5 HOH HOH . BB 8 HOH A 3 503 3 HOH HOH . BB 8 HOH A 4 504 6 HOH HOH . BB 8 HOH A 5 505 2 HOH HOH . CB 8 HOH B 1 501 4 HOH HOH . CB 8 HOH B 2 502 10 HOH HOH . CB 8 HOH B 3 503 1 HOH HOH . CB 8 HOH B 4 504 8 HOH HOH . CB 8 HOH B 5 505 5 HOH HOH . DB 8 HOH C 1 501 12 HOH HOH . DB 8 HOH C 2 502 15 HOH HOH . DB 8 HOH C 3 503 11 HOH HOH . DB 8 HOH C 4 504 2 HOH HOH . DB 8 HOH C 5 505 9 HOH HOH . DB 8 HOH C 6 506 1 HOH HOH . EB 8 HOH D 1 501 8 HOH HOH . EB 8 HOH D 2 502 13 HOH HOH . EB 8 HOH D 3 503 3 HOH HOH . EB 8 HOH D 4 504 6 HOH HOH . EB 8 HOH D 5 505 4 HOH HOH . FB 8 HOH E 1 501 4 HOH HOH . FB 8 HOH E 2 502 2 HOH HOH . FB 8 HOH E 3 503 9 HOH HOH . FB 8 HOH E 4 504 1 HOH HOH . FB 8 HOH E 5 505 7 HOH HOH . FB 8 HOH E 6 506 7 HOH HOH . FB 8 HOH E 7 507 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . CA 3 50.553 -58.134 38.28 1 150.88 ? C1 PLC 401 C 1 HETATM 2 C C2 PLC . . . CA 3 50.988 -57.035 39.271 1 145.74 ? C2 PLC 401 C 1 HETATM 3 C C3 PLC . . . CA 3 50.731 -57.227 40.79 1 142.31 ? C3 PLC 401 C 1 HETATM 4 C C4 PLC . . . CA 3 46.114 -60.313 36.822 1 164.16 ? C4 PLC 401 C 1 HETATM 5 C C5 PLC . . . CA 3 46.038 -61.642 37.632 1 165.1 ? C5 PLC 401 C 1 HETATM 6 C C6 PLC . . . CA 3 44.75 -63.71 38.481 1 164.76 ? C6 PLC 401 C 1 HETATM 7 C C7 PLC . . . CA 3 44.168 -61.491 39.376 1 163.12 ? C7 PLC 401 C 1 HETATM 8 C C8 PLC . . . CA 3 43.56 -62.117 37.027 1 163.02 ? C8 PLC 401 C 1 HETATM 9 C C' PLC . . . CA 3 53.507 -57.438 39.327 1 142.33 ? C' PLC 401 C 1 HETATM 10 C C1' PLC . . . CA 3 54.374 -56.852 40.431 1 136.59 ? C1' PLC 401 C 1 HETATM 11 C C2' PLC . . . CA 3 55.56 -56.084 39.827 1 131.22 ? C2' PLC 401 C 1 HETATM 12 C C3' PLC . . . CA 3 55.941 -54.846 40.653 1 126.56 ? C3' PLC 401 C 1 HETATM 13 C C4' PLC . . . CA 3 56.877 -55.188 41.82 1 124.78 ? C4' PLC 401 C 1 HETATM 14 C C5' PLC . . . CA 3 57.212 -53.926 42.613 1 123.3 ? C5' PLC 401 C 1 HETATM 15 C C6' PLC . . . CA 3 58.242 -54.217 43.711 1 123.07 ? C6' PLC 401 C 1 HETATM 16 C C7' PLC . . . CA 3 58.496 -52.965 44.565 1 121.15 ? C7' PLC 401 C 1 HETATM 17 C CB PLC . . . CA 3 51.293 -56.143 42.909 1 134.44 ? CB PLC 401 C 1 HETATM 18 C C1B PLC . . . CA 3 51.833 -54.859 43.481 1 129.53 ? C1B PLC 401 C 1 HETATM 19 C C2B PLC . . . CA 3 53.364 -54.779 43.356 1 126.63 ? C2B PLC 401 C 1 HETATM 20 C C3B PLC . . . CA 3 54.018 -54.14 44.586 1 124.83 ? C3B PLC 401 C 1 HETATM 21 C C4B PLC . . . CA 3 53.837 -52.625 44.633 1 122.25 ? C4B PLC 401 C 1 HETATM 22 C C5B PLC . . . CA 3 54.479 -52.033 45.909 1 120.41 ? C5B PLC 401 C 1 HETATM 23 C C6B PLC . . . CA 3 54.041 -50.58 46.097 1 117.34 ? C6B PLC 401 C 1 HETATM 24 C C7B PLC . . . CA 3 54.616 -49.934 47.335 1 115.66 ? C7B PLC 401 C 1 HETATM 25 O O' PLC . . . CA 3 53.722 -58.463 38.683 1 144.33 ? O' PLC 401 C 1 HETATM 26 O OB PLC . . . CA 3 50.934 -57.115 43.552 1 135.74 ? OB PLC 401 C 1 HETATM 27 O O2 PLC . . . CA 3 52.375 -56.641 39.042 1 144.71 ? O2 PLC 401 C 1 HETATM 28 O O3 PLC . . . CA 3 51.212 -56.096 41.525 1 138.2 ? O3 PLC 401 C 1 HETATM 29 O O1P PLC . . . CA 3 48.574 -58.737 35.511 1 164.04 ? O1P PLC 401 C 1 HETATM 30 O O2P PLC . . . CA 3 49.264 -60.556 37.077 1 165.91 ? O2P PLC 401 C 1 HETATM 31 O O3P PLC . . . CA 3 49.173 -58.1 37.963 1 156.41 ? O3P PLC 401 C 1 HETATM 32 O O4P PLC . . . CA 3 46.967 -59.401 37.474 1 163.46 ? O4P PLC 401 C 1 HETATM 33 N N PLC . . . CA 3 44.654 -62.227 38.108 1 164.03 ? N PLC 401 C 1 HETATM 34 P P PLC . . . CA 3 48.513 -59.169 36.933 1 163.01 ? P PLC 401 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #