data_5MVN # _model_server_result.job_id 6D2lStkoNZ23HzZ7nHdOlQ _model_server_result.datetime_utc '2024-11-04 22:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":402}' # _entry.id 5MVN # _exptl.entry_id 5MVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.5 _cell.angle_gamma 90 _cell.entry_id 5MVN _cell.length_a 181.229 _cell.length_b 132.474 _cell.length_c 159.759 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 O N N ? 2 S N N ? 2 Y N N ? 2 AA N N ? 2 GA N N ? 2 KA N N ? 2 QA N N ? 2 TA N N ? 2 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 B O PRO 68 B PRO 68 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 B O ILE 71 B ILE 71 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C O PRO 68 C PRO 68 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc6 C O ILE 71 C ILE 71 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc7 D O PRO 68 D PRO 68 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc8 D O ILE 71 D ILE 71 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 XA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5MVN _atom_sites.fract_transf_matrix[1][1] 0.005518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001223 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 403 PLC PLC . I 3 PLC A 1 404 404 PLC PLC . J 4 CL A 1 405 405 CL CL . K 4 CL A 1 406 406 CL CL . L 4 CL A 1 407 407 CL CL . M 5 NA A 1 408 408 NA NA . N 5 NA A 1 409 409 NA NA . O 2 ACT A 1 410 410 ACT ACT . P 6 LMT A 1 411 411 LMT LMT . Q 6 LMT A 1 412 412 LMT LMT . R 3 PLC A 1 413 403 PLC PLC . S 2 ACT B 1 401 401 ACT ACT . T 3 PLC B 1 402 402 PLC PLC . U 3 PLC B 1 403 403 PLC PLC . V 3 PLC B 1 404 404 PLC PLC . W 4 CL B 1 405 405 CL CL . X 5 NA B 1 406 406 NA NA . Y 2 ACT B 1 407 407 ACT ACT . Z 6 LMT B 1 408 408 LMT LMT . AA 2 ACT B 1 409 401 ACT ACT . BA 7 PFL B 1 410 1 PFL PFL . CA 3 PLC C 1 401 402 PLC PLC . DA 3 PLC C 1 402 404 PLC PLC . EA 4 CL C 1 403 405 CL CL . FA 5 NA C 1 404 406 NA NA . GA 2 ACT C 1 405 407 ACT ACT . HA 6 LMT C 1 406 408 LMT LMT . IA 7 PFL C 1 407 1 PFL PFL . JA 3 PLC D 1 401 403 PLC PLC . KA 2 ACT D 1 402 401 ACT ACT . LA 3 PLC D 1 403 402 PLC PLC . MA 3 PLC D 1 404 403 PLC PLC . NA 3 PLC D 1 405 404 PLC PLC . OA 4 CL D 1 406 405 CL CL . PA 5 NA D 1 407 406 NA NA . QA 2 ACT D 1 408 407 ACT ACT . RA 6 LMT D 1 409 408 LMT LMT . SA 7 PFL D 1 410 1 PFL PFL . TA 2 ACT E 1 401 401 ACT ACT . UA 3 PLC E 1 402 402 PLC PLC . VA 3 PLC E 1 403 404 PLC PLC . WA 4 CL E 1 404 405 CL CL . XA 5 NA E 1 405 406 NA NA . YA 2 ACT E 1 406 407 ACT ACT . ZA 6 LMT E 1 407 408 LMT LMT . AB 7 PFL E 1 408 1 PFL PFL . BB 8 HOH A 1 501 14 HOH HOH . BB 8 HOH A 2 502 5 HOH HOH . BB 8 HOH A 3 503 3 HOH HOH . BB 8 HOH A 4 504 6 HOH HOH . BB 8 HOH A 5 505 2 HOH HOH . CB 8 HOH B 1 501 4 HOH HOH . CB 8 HOH B 2 502 10 HOH HOH . CB 8 HOH B 3 503 1 HOH HOH . CB 8 HOH B 4 504 8 HOH HOH . CB 8 HOH B 5 505 5 HOH HOH . DB 8 HOH C 1 501 12 HOH HOH . DB 8 HOH C 2 502 15 HOH HOH . DB 8 HOH C 3 503 11 HOH HOH . DB 8 HOH C 4 504 2 HOH HOH . DB 8 HOH C 5 505 9 HOH HOH . DB 8 HOH C 6 506 1 HOH HOH . EB 8 HOH D 1 501 8 HOH HOH . EB 8 HOH D 2 502 13 HOH HOH . EB 8 HOH D 3 503 3 HOH HOH . EB 8 HOH D 4 504 6 HOH HOH . EB 8 HOH D 5 505 4 HOH HOH . FB 8 HOH E 1 501 4 HOH HOH . FB 8 HOH E 2 502 2 HOH HOH . FB 8 HOH E 3 503 9 HOH HOH . FB 8 HOH E 4 504 1 HOH HOH . FB 8 HOH E 5 505 7 HOH HOH . FB 8 HOH E 6 506 7 HOH HOH . FB 8 HOH E 7 507 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . KA 2 47.812 -46.422 3.692 1 84.43 ? C ACT 402 D 1 HETATM 2 O O ACT . . . KA 2 48.099 -47.092 2.671 1 84.17 ? O ACT 402 D 1 HETATM 3 O OXT ACT . . . KA 2 47.122 -45.389 3.693 1 84.09 ? OXT ACT 402 D 1 HETATM 4 C CH3 ACT . . . KA 2 48.364 -46.888 5.053 1 85.33 ? CH3 ACT 402 D 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #