data_5MVN
#
_model_server_result.job_id            izQCjV77i1LAnVGVPC41-g 
_model_server_result.datetime_utc      '2024-11-27 01:28:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":402}' 
#
_entry.id    5MVN 
#
_exptl.entry_id    5MVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.5 
_cell.angle_gamma         90 
_cell.entry_id            5MVN 
_cell.length_a            181.229 
_cell.length_b            132.474 
_cell.length_c            159.759 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 R N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 CA N N 
? 3 DA N N 
? 3 JA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 UA N N 
? 3 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 68 A PRO 68 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc2 A O ILE 71 A ILE 71 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc3 B O PRO 68 B PRO 68 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc4 B O ILE 71 B ILE 71 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc5 C O PRO 68 C PRO 68 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc6 C O ILE 71 C ILE 71 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc7 D O PRO 68 D PRO 68 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? 
metalc ? metalc8 D O ILE 71 D ILE 71 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc9 E O ILE 71 E ILE 71 1_555 XA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 379 n n 
C1 O3P PLC sing 380 n n 
C1 H11 PLC sing 381 n n 
C1 H12 PLC sing 382 n n 
C2 C3 PLC sing 383 n n 
C2 O2 PLC sing 384 n n 
C2 H2 PLC sing 385 n n 
C3 O3 PLC sing 386 n n 
C3 H31 PLC sing 387 n n 
C3 H32 PLC sing 388 n n 
C4 C5 PLC sing 389 n n 
C4 O4P PLC sing 390 n n 
C4 H41 PLC sing 391 n n 
C4 H42 PLC sing 392 n n 
C5 N PLC sing 393 n n 
C5 H51 PLC sing 394 n n 
C5 H52 PLC sing 395 n n 
C6 N PLC sing 396 n n 
C6 H61 PLC sing 397 n n 
C6 H62 PLC sing 398 n n 
C6 H63 PLC sing 399 n n 
C7 N PLC sing 400 n n 
C7 H71 PLC sing 401 n n 
C7 H72 PLC sing 402 n n 
C7 H73 PLC sing 403 n n 
C8 N PLC sing 404 n n 
C8 H81 PLC sing 405 n n 
C8 H82 PLC sing 406 n n 
C8 H83 PLC sing 407 n n 
C' C1' PLC sing 408 n n 
C' O' PLC doub 409 n n 
C' O2 PLC sing 410 n n 
C1' C2' PLC sing 411 n n 
C1' "H1'1" PLC sing 412 n n 
C1' "H1'2" PLC sing 413 n n 
C2' C3' PLC sing 414 n n 
C2' "H2'1" PLC sing 415 n n 
C2' "H2'2" PLC sing 416 n n 
C3' C4' PLC sing 417 n n 
C3' "H3'1" PLC sing 418 n n 
C3' "H3'2" PLC sing 419 n n 
C4' C5' PLC sing 420 n n 
C4' "H4'1" PLC sing 421 n n 
C4' "H4'2" PLC sing 422 n n 
C5' C6' PLC sing 423 n n 
C5' "H5'1" PLC sing 424 n n 
C5' "H5'2" PLC sing 425 n n 
C6' C7' PLC sing 426 n n 
C6' "H6'1" PLC sing 427 n n 
C6' "H6'2" PLC sing 428 n n 
C7' C8' PLC sing 429 n n 
C7' "H7'1" PLC sing 430 n n 
C7' "H7'2" PLC sing 431 n n 
C8' C9' PLC sing 432 n n 
C8' "H8'1" PLC sing 433 n n 
C8' "H8'2" PLC sing 434 n n 
C9' CA' PLC sing 435 n n 
C9' "H9'1" PLC sing 436 n n 
C9' "H9'2" PLC sing 437 n n 
CA' CB' PLC sing 438 n n 
CA' "HT'1" PLC sing 439 n n 
CA' "HT'2" PLC sing 440 n n 
CB' "HE'1" PLC sing 441 n n 
CB' "HE'2" PLC sing 442 n n 
CB' "HE'3" PLC sing 443 n n 
CB C1B PLC sing 444 n n 
CB OB PLC doub 445 n n 
CB O3 PLC sing 446 n n 
C1B C2B PLC sing 447 n n 
C1B H1A1 PLC sing 448 n n 
C1B H1A2 PLC sing 449 n n 
C2B C3B PLC sing 450 n n 
C2B H2A1 PLC sing 451 n n 
C2B H2A2 PLC sing 452 n n 
C3B C4B PLC sing 453 n n 
C3B H3A1 PLC sing 454 n n 
C3B H3A2 PLC sing 455 n n 
C4B C5B PLC sing 456 n n 
C4B H4A1 PLC sing 457 n n 
C4B H4A2 PLC sing 458 n n 
C5B C6B PLC sing 459 n n 
C5B H5A1 PLC sing 460 n n 
C5B H5A2 PLC sing 461 n n 
C6B C7B PLC sing 462 n n 
C6B H6A1 PLC sing 463 n n 
C6B H6A2 PLC sing 464 n n 
C7B C8B PLC sing 465 n n 
C7B H7A1 PLC sing 466 n n 
C7B H7A2 PLC sing 467 n n 
C8B C9B PLC sing 468 n n 
C8B H8A1 PLC sing 469 n n 
C8B H8A2 PLC sing 470 n n 
C9B CAA PLC sing 471 n n 
C9B H9A1 PLC sing 472 n n 
C9B H9A2 PLC sing 473 n n 
CAA CBA PLC sing 474 n n 
CAA HTA1 PLC sing 475 n n 
CAA HTA2 PLC sing 476 n n 
CBA HEA1 PLC sing 477 n n 
CBA HEA2 PLC sing 478 n n 
CBA HEA3 PLC sing 479 n n 
O1P P PLC doub 480 n n 
O2P P PLC sing 481 n n 
O2P HOP2 PLC sing 482 n n 
O3P P PLC sing 483 n n 
O4P P PLC sing 484 n n 
#
_atom_sites.entry_id                     5MVN 
_atom_sites.fract_transf_matrix[1][1]    0.005518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001223 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ACT A 1 401 401 ACT ACT . 
G 3 PLC A 1 402 402 PLC PLC . 
H 3 PLC A 1 403 403 PLC PLC . 
I 3 PLC A 1 404 404 PLC PLC . 
J 4 CL A 1 405 405 CL CL . 
K 4 CL A 1 406 406 CL CL . 
L 4 CL A 1 407 407 CL CL . 
M 5 NA A 1 408 408 NA NA . 
N 5 NA A 1 409 409 NA NA . 
O 2 ACT A 1 410 410 ACT ACT . 
P 6 LMT A 1 411 411 LMT LMT . 
Q 6 LMT A 1 412 412 LMT LMT . 
R 3 PLC A 1 413 403 PLC PLC . 
S 2 ACT B 1 401 401 ACT ACT . 
T 3 PLC B 1 402 402 PLC PLC . 
U 3 PLC B 1 403 403 PLC PLC . 
V 3 PLC B 1 404 404 PLC PLC . 
W 4 CL B 1 405 405 CL CL . 
X 5 NA B 1 406 406 NA NA . 
Y 2 ACT B 1 407 407 ACT ACT . 
Z 6 LMT B 1 408 408 LMT LMT . 
AA 2 ACT B 1 409 401 ACT ACT . 
BA 7 PFL B 1 410 1 PFL PFL . 
CA 3 PLC C 1 401 402 PLC PLC . 
DA 3 PLC C 1 402 404 PLC PLC . 
EA 4 CL C 1 403 405 CL CL . 
FA 5 NA C 1 404 406 NA NA . 
GA 2 ACT C 1 405 407 ACT ACT . 
HA 6 LMT C 1 406 408 LMT LMT . 
IA 7 PFL C 1 407 1 PFL PFL . 
JA 3 PLC D 1 401 403 PLC PLC . 
KA 2 ACT D 1 402 401 ACT ACT . 
LA 3 PLC D 1 403 402 PLC PLC . 
MA 3 PLC D 1 404 403 PLC PLC . 
NA 3 PLC D 1 405 404 PLC PLC . 
OA 4 CL D 1 406 405 CL CL . 
PA 5 NA D 1 407 406 NA NA . 
QA 2 ACT D 1 408 407 ACT ACT . 
RA 6 LMT D 1 409 408 LMT LMT . 
SA 7 PFL D 1 410 1 PFL PFL . 
TA 2 ACT E 1 401 401 ACT ACT . 
UA 3 PLC E 1 402 402 PLC PLC . 
VA 3 PLC E 1 403 404 PLC PLC . 
WA 4 CL E 1 404 405 CL CL . 
XA 5 NA E 1 405 406 NA NA . 
YA 2 ACT E 1 406 407 ACT ACT . 
ZA 6 LMT E 1 407 408 LMT LMT . 
AB 7 PFL E 1 408 1 PFL PFL . 
BB 8 HOH A 1 501 14 HOH HOH . 
BB 8 HOH A 2 502 5 HOH HOH . 
BB 8 HOH A 3 503 3 HOH HOH . 
BB 8 HOH A 4 504 6 HOH HOH . 
BB 8 HOH A 5 505 2 HOH HOH . 
CB 8 HOH B 1 501 4 HOH HOH . 
CB 8 HOH B 2 502 10 HOH HOH . 
CB 8 HOH B 3 503 1 HOH HOH . 
CB 8 HOH B 4 504 8 HOH HOH . 
CB 8 HOH B 5 505 5 HOH HOH . 
DB 8 HOH C 1 501 12 HOH HOH . 
DB 8 HOH C 2 502 15 HOH HOH . 
DB 8 HOH C 3 503 11 HOH HOH . 
DB 8 HOH C 4 504 2 HOH HOH . 
DB 8 HOH C 5 505 9 HOH HOH . 
DB 8 HOH C 6 506 1 HOH HOH . 
EB 8 HOH D 1 501 8 HOH HOH . 
EB 8 HOH D 2 502 13 HOH HOH . 
EB 8 HOH D 3 503 3 HOH HOH . 
EB 8 HOH D 4 504 6 HOH HOH . 
EB 8 HOH D 5 505 4 HOH HOH . 
FB 8 HOH E 1 501 4 HOH HOH . 
FB 8 HOH E 2 502 2 HOH HOH . 
FB 8 HOH E 3 503 9 HOH HOH . 
FB 8 HOH E 4 504 1 HOH HOH . 
FB 8 HOH E 5 505 7 HOH HOH . 
FB 8 HOH E 6 506 7 HOH HOH . 
FB 8 HOH E 7 507 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLC . . . T 3 25.153 -34.08 51.388 1 166.82 ? C1 PLC 402 B 1 
HETATM 2 C C2 PLC . . . T 3 26.577 -33.7 51.87 1 161.22 ? C2 PLC 402 B 1 
HETATM 3 C C3 PLC . . . T 3 26.749 -32.934 53.211 1 157.26 ? C3 PLC 402 B 1 
HETATM 4 C C4 PLC . . . T 3 20.775 -31.934 49.631 1 177.34 ? C4 PLC 402 B 1 
HETATM 5 C C5 PLC . . . T 3 19.904 -32.039 50.924 1 179.31 ? C5 PLC 402 B 1 
HETATM 6 C C6 PLC . . . T 3 17.869 -31.48 52.404 1 181.31 ? C6 PLC 402 B 1 
HETATM 7 C C7 PLC . . . T 3 19.126 -29.637 51.377 1 179.56 ? C7 PLC 402 B 1 
HETATM 8 C C8 PLC . . . T 3 17.674 -31.113 49.98 1 179.61 ? C8 PLC 402 B 1 
HETATM 9 C C' PLC . . . T 3 27.398 -35.969 52.712 1 157.83 ? C' PLC 402 B 1 
HETATM 10 C C1' PLC . . . T 3 28.612 -36.099 53.619 1 152.96 ? C1' PLC 402 B 1 
HETATM 11 C C2' PLC . . . T 3 29.544 -37.204 53.087 1 149.08 ? C2' PLC 402 B 1 
HETATM 12 C C3' PLC . . . T 3 31.03 -36.864 53.265 1 145.04 ? C3' PLC 402 B 1 
HETATM 13 C C4' PLC . . . T 3 31.549 -37.236 54.665 1 144.1 ? C4' PLC 402 B 1 
HETATM 14 C C5' PLC . . . T 3 33.001 -36.77 54.84 1 142.77 ? C5' PLC 402 B 1 
HETATM 15 C C6' PLC . . . T 3 33.503 -37.051 56.26 1 142.69 ? C6' PLC 402 B 1 
HETATM 16 C C7' PLC . . . T 3 34.875 -36.407 56.493 1 140.86 ? C7' PLC 402 B 1 
HETATM 17 C CB PLC . . . T 3 28.776 -32.681 54.555 1 147.92 ? CB PLC 402 B 1 
HETATM 18 C C1B PLC . . . T 3 30.174 -32.117 54.505 1 142.24 ? C1B PLC 402 B 1 
HETATM 19 C C2B PLC . . . T 3 31.227 -33.238 54.625 1 138.32 ? C2B PLC 402 B 1 
HETATM 20 C C3B PLC . . . T 3 32.293 -32.952 55.69 1 134.16 ? C3B PLC 402 B 1 
HETATM 21 C C4B PLC . . . T 3 33.414 -32.097 55.167 1 128.14 ? C4B PLC 402 B 1 
HETATM 22 C C5B PLC . . . T 3 34.583 -32.038 56.195 1 123.87 ? C5B PLC 402 B 1 
HETATM 23 C C6B PLC . . . T 3 35.67 -31.031 55.765 1 120.1 ? C6B PLC 402 B 1 
HETATM 24 C C7B PLC . . . T 3 36.898 -31.023 56.607 1 118.39 ? C7B PLC 402 B 1 
HETATM 25 O O' PLC . . . T 3 26.439 -36.736 52.657 1 159.75 ? O' PLC 402 B 1 
HETATM 26 O OB PLC . . . T 3 28.264 -33.253 55.509 1 149.65 ? OB PLC 402 B 1 
HETATM 27 O O2 PLC . . . T 3 27.475 -34.853 51.842 1 159.79 ? O2 PLC 402 B 1 
HETATM 28 O O3 PLC . . . T 3 28.094 -32.469 53.36 1 151.92 ? O3 PLC 402 B 1 
HETATM 29 O O1P PLC . . . T 3 23.513 -33.607 48.526 1 175.95 ? O1P PLC 402 B 1 
HETATM 30 O O2P PLC . . . T 3 22.286 -34.481 50.5 1 180.15 ? O2P PLC 402 B 1 
HETATM 31 O O3P PLC . . . T 3 24.373 -33 50.892 1 171.23 ? O3P PLC 402 B 1 
HETATM 32 O O4P PLC . . . T 3 22.147 -31.914 49.978 1 176.16 ? O4P PLC 402 B 1 
HETATM 33 N N PLC . . . T 3 18.668 -31.092 51.157 1 179.91 ? N PLC 402 B 1 
HETATM 34 P P PLC . . . T 3 23.107 -33.269 49.905 1 176.04 ? P PLC 402 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#