data_5MVN # _model_server_result.job_id z0wiERhKpiOfYSY0aZvtyQ _model_server_result.datetime_utc '2024-11-04 22:44:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":411}' # _entry.id 5MVN # _exptl.entry_id 5MVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.5 _cell.angle_gamma 90 _cell.entry_id 5MVN _cell.length_a 181.229 _cell.length_b 132.474 _cell.length_c 159.759 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 Z N N ? 6 HA N N ? 6 RA N N ? 6 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 B O PRO 68 B PRO 68 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 B O ILE 71 B ILE 71 1_555 X NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C O PRO 68 C PRO 68 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc6 C O ILE 71 C ILE 71 1_555 FA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc7 D O PRO 68 D PRO 68 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc8 D O ILE 71 D ILE 71 1_555 PA NA NA . D NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 XA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 200 n n C1B O1B LMT sing 201 n n C1B O5B LMT sing 202 n n C1B H1B LMT sing 203 n n C2B C3B LMT sing 204 n n C2B O2B LMT sing 205 n n C2B H2B LMT sing 206 n n C3B C4B LMT sing 207 n n C3B O3B LMT sing 208 n n C3B H3B LMT sing 209 n n C4B C5B LMT sing 210 n n C4B O4' LMT sing 211 n n C4B H4B LMT sing 212 n n C5B C6B LMT sing 213 n n C5B O5B LMT sing 214 n n C5B H5B LMT sing 215 n n C6B O6B LMT sing 216 n n C6B "H6'2" LMT sing 217 n n C6B "H6'1" LMT sing 218 n n O1B C4' LMT sing 219 n n O2B H2O1 LMT sing 220 n n O3B H3O1 LMT sing 221 n n O4' H4O1 LMT sing 222 n n O6B H6B LMT sing 223 n n C1' C2' LMT sing 224 n n C1' O1' LMT sing 225 n n C1' O5' LMT sing 226 n n C1' H1' LMT sing 227 n n C2' C3' LMT sing 228 n n C2' O2' LMT sing 229 n n C2' H2' LMT sing 230 n n C3' C4' LMT sing 231 n n C3' O3' LMT sing 232 n n C3' H3' LMT sing 233 n n C4' C5' LMT sing 234 n n C4' H4' LMT sing 235 n n C5' C6' LMT sing 236 n n C5' O5' LMT sing 237 n n C5' H5' LMT sing 238 n n C6' O6' LMT sing 239 n n C6' H6D LMT sing 240 n n C6' H6E LMT sing 241 n n O1' C1 LMT sing 242 n n O2' H2O2 LMT sing 243 n n O3' H3O2 LMT sing 244 n n O6' H6' LMT sing 245 n n C1 C2 LMT sing 246 n n C1 H12 LMT sing 247 n n C1 H11 LMT sing 248 n n C2 C3 LMT sing 249 n n C2 H22 LMT sing 250 n n C2 H21 LMT sing 251 n n C3 C4 LMT sing 252 n n C3 H32 LMT sing 253 n n C3 H31 LMT sing 254 n n C4 C5 LMT sing 255 n n C4 H42 LMT sing 256 n n C4 H41 LMT sing 257 n n C5 C6 LMT sing 258 n n C5 H52 LMT sing 259 n n C5 H51 LMT sing 260 n n C6 C7 LMT sing 261 n n C6 H62 LMT sing 262 n n C6 H61 LMT sing 263 n n C7 C8 LMT sing 264 n n C7 H72 LMT sing 265 n n C7 H71 LMT sing 266 n n C8 C9 LMT sing 267 n n C8 H82 LMT sing 268 n n C8 H81 LMT sing 269 n n C9 C10 LMT sing 270 n n C9 H92 LMT sing 271 n n C9 H91 LMT sing 272 n n C10 C11 LMT sing 273 n n C10 H102 LMT sing 274 n n C10 H101 LMT sing 275 n n C11 C12 LMT sing 276 n n C11 H112 LMT sing 277 n n C11 H111 LMT sing 278 n n C12 H123 LMT sing 279 n n C12 H122 LMT sing 280 n n C12 H121 LMT sing 281 n n # _atom_sites.entry_id 5MVN _atom_sites.fract_transf_matrix[1][1] 0.005518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001223 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 403 PLC PLC . I 3 PLC A 1 404 404 PLC PLC . J 4 CL A 1 405 405 CL CL . K 4 CL A 1 406 406 CL CL . L 4 CL A 1 407 407 CL CL . M 5 NA A 1 408 408 NA NA . N 5 NA A 1 409 409 NA NA . O 2 ACT A 1 410 410 ACT ACT . P 6 LMT A 1 411 411 LMT LMT . Q 6 LMT A 1 412 412 LMT LMT . R 3 PLC A 1 413 403 PLC PLC . S 2 ACT B 1 401 401 ACT ACT . T 3 PLC B 1 402 402 PLC PLC . U 3 PLC B 1 403 403 PLC PLC . V 3 PLC B 1 404 404 PLC PLC . W 4 CL B 1 405 405 CL CL . X 5 NA B 1 406 406 NA NA . Y 2 ACT B 1 407 407 ACT ACT . Z 6 LMT B 1 408 408 LMT LMT . AA 2 ACT B 1 409 401 ACT ACT . BA 7 PFL B 1 410 1 PFL PFL . CA 3 PLC C 1 401 402 PLC PLC . DA 3 PLC C 1 402 404 PLC PLC . EA 4 CL C 1 403 405 CL CL . FA 5 NA C 1 404 406 NA NA . GA 2 ACT C 1 405 407 ACT ACT . HA 6 LMT C 1 406 408 LMT LMT . IA 7 PFL C 1 407 1 PFL PFL . JA 3 PLC D 1 401 403 PLC PLC . KA 2 ACT D 1 402 401 ACT ACT . LA 3 PLC D 1 403 402 PLC PLC . MA 3 PLC D 1 404 403 PLC PLC . NA 3 PLC D 1 405 404 PLC PLC . OA 4 CL D 1 406 405 CL CL . PA 5 NA D 1 407 406 NA NA . QA 2 ACT D 1 408 407 ACT ACT . RA 6 LMT D 1 409 408 LMT LMT . SA 7 PFL D 1 410 1 PFL PFL . TA 2 ACT E 1 401 401 ACT ACT . UA 3 PLC E 1 402 402 PLC PLC . VA 3 PLC E 1 403 404 PLC PLC . WA 4 CL E 1 404 405 CL CL . XA 5 NA E 1 405 406 NA NA . YA 2 ACT E 1 406 407 ACT ACT . ZA 6 LMT E 1 407 408 LMT LMT . AB 7 PFL E 1 408 1 PFL PFL . BB 8 HOH A 1 501 14 HOH HOH . BB 8 HOH A 2 502 5 HOH HOH . BB 8 HOH A 3 503 3 HOH HOH . BB 8 HOH A 4 504 6 HOH HOH . BB 8 HOH A 5 505 2 HOH HOH . CB 8 HOH B 1 501 4 HOH HOH . CB 8 HOH B 2 502 10 HOH HOH . CB 8 HOH B 3 503 1 HOH HOH . CB 8 HOH B 4 504 8 HOH HOH . CB 8 HOH B 5 505 5 HOH HOH . DB 8 HOH C 1 501 12 HOH HOH . DB 8 HOH C 2 502 15 HOH HOH . DB 8 HOH C 3 503 11 HOH HOH . DB 8 HOH C 4 504 2 HOH HOH . DB 8 HOH C 5 505 9 HOH HOH . DB 8 HOH C 6 506 1 HOH HOH . EB 8 HOH D 1 501 8 HOH HOH . EB 8 HOH D 2 502 13 HOH HOH . EB 8 HOH D 3 503 3 HOH HOH . EB 8 HOH D 4 504 6 HOH HOH . EB 8 HOH D 5 505 4 HOH HOH . FB 8 HOH E 1 501 4 HOH HOH . FB 8 HOH E 2 502 2 HOH HOH . FB 8 HOH E 3 503 9 HOH HOH . FB 8 HOH E 4 504 1 HOH HOH . FB 8 HOH E 5 505 7 HOH HOH . FB 8 HOH E 6 506 7 HOH HOH . FB 8 HOH E 7 507 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . P 6 52.437 -26.866 37.855 1 59.34 ? C1 LMT 411 A 1 HETATM 2 C C2 LMT . . . P 6 53.106 -25.957 38.942 1 57.54 ? C2 LMT 411 A 1 HETATM 3 C C3 LMT . . . P 6 53.814 -26.798 40.044 1 51.98 ? C3 LMT 411 A 1 HETATM 4 C C4 LMT . . . P 6 54.284 -25.911 41.206 1 47.27 ? C4 LMT 411 A 1 HETATM 5 C C5 LMT . . . P 6 55.001 -26.774 42.265 1 45.05 ? C5 LMT 411 A 1 HETATM 6 C C6 LMT . . . P 6 55.601 -25.909 43.4 1 38.1 ? C6 LMT 411 A 1 HETATM 7 C C7 LMT . . . P 6 56.244 -26.794 44.473 1 31.45 ? C7 LMT 411 A 1 HETATM 8 C C8 LMT . . . P 6 56.883 -25.937 45.561 1 28.77 ? C8 LMT 411 A 1 HETATM 9 C C9 LMT . . . P 6 57.475 -26.818 46.655 1 30.52 ? C9 LMT 411 A 1 HETATM 10 C C10 LMT . . . P 6 57.994 -25.931 47.791 1 33.1 ? C10 LMT 411 A 1 HETATM 11 C C11 LMT . . . P 6 58.471 -26.821 48.968 1 36.13 ? C11 LMT 411 A 1 HETATM 12 C C12 LMT . . . P 6 58.894 -26.035 50.235 1 34.86 ? C12 LMT 411 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #