data_5MW5
#
_model_server_result.job_id            Glwq23kDDiuVkspDmbtGGw 
_model_server_result.datetime_utc      '2025-07-30 15:16:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5MW5 
#
_exptl.entry_id    5MW5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MW5 
_cell.length_a            48.266 
_cell.length_b            83.878 
_cell.length_c            99.352 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MW5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 49 1_555 A SG CYS 36 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 24 A CYS 50 1_555 A SG CYS 41 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 48 A CYS 74 1_555 A SG CYS 62 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 172 A CYS 198 1_555 A SG CYS 181 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 185 A CYS 211 1_555 A SG CYS 197 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 A SG CYS 205 A CYS 231 1_555 A SG CYS 214 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 A SG CYS 219 A CYS 245 1_555 A SG CYS 230 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 A SG CYS 223 A CYS 249 1_555 A SG CYS 236 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 A SG CYS 238 A CYS 264 1_555 A SG CYS 247 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 A SG CYS 250 A CYS 276 1_555 A SG CYS 261 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 A SG CYS 256 A CYS 282 1_555 A SG CYS 267 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 A SG CYS 269 A CYS 295 1_555 A SG CYS 278 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 127 A ASN 153 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
metalc ? metalc1 A O CYS 24 A CYS 50 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 A OD2 ASP 25 A ASP 51 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc3 A OD1 ASP 25 A ASP 51 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 A OD2 ASP 25 A ASP 51 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc5 A OD1 ASP 25 A ASP 51 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc6 A OD1 ASP 39 A ASP 65 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 A O GLU 40 A GLU 66 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc8 A OD1 ASP 42 A ASP 68 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc9 A OD2 ASP 42 A ASP 68 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc10 A OD2 ASP 42 A ASP 68 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc11 A OD1 ASP 124 A ASP 150 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc12 A OD2 ASP 124 A ASP 150 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc13 A OD2 ASP 124 A ASP 150 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc14 A O TRP 125 A TRP 151 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc15 A OD1 ASP 126 A ASP 152 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc16 A OD1 ASP 126 A ASP 152 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc17 A OD2 ASP 126 A ASP 152 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc18 C CA CA . A CA 402 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5MW5 
_atom_sites.fract_transf_matrix[1][1]    0.020719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010065 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 1 NAG NAG . 
C 3 CA A 1 402 1 CA CA . 
D 3 CA A 1 403 2 CA CA . 
E 3 CA A 1 404 3 CA CA . 
F 4 HOH A 1 501 30 HOH HOH . 
F 4 HOH A 2 502 49 HOH HOH . 
F 4 HOH A 3 503 18 HOH HOH . 
F 4 HOH A 4 504 48 HOH HOH . 
F 4 HOH A 5 505 37 HOH HOH . 
F 4 HOH A 6 506 35 HOH HOH . 
F 4 HOH A 7 507 43 HOH HOH . 
F 4 HOH A 8 508 38 HOH HOH . 
F 4 HOH A 9 509 27 HOH HOH . 
F 4 HOH A 10 510 16 HOH HOH . 
F 4 HOH A 11 511 7 HOH HOH . 
F 4 HOH A 12 512 54 HOH HOH . 
F 4 HOH A 13 513 34 HOH HOH . 
F 4 HOH A 14 514 32 HOH HOH . 
F 4 HOH A 15 515 3 HOH HOH . 
F 4 HOH A 16 516 22 HOH HOH . 
F 4 HOH A 17 517 47 HOH HOH . 
F 4 HOH A 18 518 9 HOH HOH . 
F 4 HOH A 19 519 4 HOH HOH . 
F 4 HOH A 20 520 42 HOH HOH . 
F 4 HOH A 21 521 53 HOH HOH . 
F 4 HOH A 22 522 2 HOH HOH . 
F 4 HOH A 23 523 23 HOH HOH . 
F 4 HOH A 24 524 41 HOH HOH . 
F 4 HOH A 25 525 13 HOH HOH . 
F 4 HOH A 26 526 39 HOH HOH . 
F 4 HOH A 27 527 6 HOH HOH . 
F 4 HOH A 28 528 55 HOH HOH . 
F 4 HOH A 29 529 44 HOH HOH . 
F 4 HOH A 30 530 29 HOH HOH . 
F 4 HOH A 31 531 50 HOH HOH . 
F 4 HOH A 32 532 20 HOH HOH . 
F 4 HOH A 33 533 21 HOH HOH . 
F 4 HOH A 34 534 12 HOH HOH . 
F 4 HOH A 35 535 52 HOH HOH . 
F 4 HOH A 36 536 14 HOH HOH . 
F 4 HOH A 37 537 5 HOH HOH . 
F 4 HOH A 38 538 19 HOH HOH . 
F 4 HOH A 39 539 56 HOH HOH . 
F 4 HOH A 40 540 36 HOH HOH . 
F 4 HOH A 41 541 25 HOH HOH . 
F 4 HOH A 42 542 11 HOH HOH . 
F 4 HOH A 43 543 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -27.26 8.818 32.706 1 101.39 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . B 2 -28.611 8.685 33.42 1 103.43 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . B 2 -28.757 7.297 34.034 1 104.91 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . B 2 -28.024 6.269 33.185 1 101.1 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . B 2 -26.525 6.545 33.24 1 99.71 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . B 2 -25.788 6.062 32.013 1 94.43 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . B 2 -29.542 10.792 34.285 1 104.35 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . B 2 -30.269 10.902 32.977 1 97.43 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . B 2 -28.766 9.712 34.438 1 102.56 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . B 2 -30.137 6.96 34.121 1 107.71 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . B 2 -28.279 4.958 33.675 1 99.09 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . B 2 -26.28 7.958 33.342 1 103.86 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . B 2 -24.405 6.38 32.081 1 86.37 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . B 2 -29.652 11.642 35.163 1 105.96 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#