data_5MW8 # _model_server_result.job_id H_dzF0wq9zXI99Vdzd_PEQ _model_server_result.datetime_utc '2024-11-23 23:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5MW8 # _exptl.entry_id 5MW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.37 _cell.angle_gamma 90 _cell.entry_id 5MW8 _cell.length_a 60.162 _cell.length_b 71.495 _cell.length_c 61.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 162 A CYS 159 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 A SG CYS 165 A CYS 162 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A SG CYS 184 A CYS 181 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 294 A CYS 291 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A OD1 ASP 440 A ASP 437 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 440 A ASP 437 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 B O1G ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 B O1B ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B O3G ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B O3B ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc11 B O2A ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 C O43 5MY . A 5MY 502 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc13 F MG MG . A MG 505 1_555 H O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 125 n n PG O2G ATP sing 126 n n PG O3G ATP sing 127 n n PG O3B ATP sing 128 n n O2G HOG2 ATP sing 129 n n O3G HOG3 ATP sing 130 n n PB O1B ATP doub 131 n n PB O2B ATP sing 132 n n PB O3B ATP sing 133 n n PB O3A ATP sing 134 n n O2B HOB2 ATP sing 135 n n PA O1A ATP doub 136 n n PA O2A ATP sing 137 n n PA O3A ATP sing 138 n n PA O5' ATP sing 139 n n O2A HOA2 ATP sing 140 n n O5' C5' ATP sing 141 n n C5' C4' ATP sing 142 n n C5' "H5'1" ATP sing 143 n n C5' "H5'2" ATP sing 144 n n C4' O4' ATP sing 145 n n C4' C3' ATP sing 146 n n C4' H4' ATP sing 147 n n O4' C1' ATP sing 148 n n C3' O3' ATP sing 149 n n C3' C2' ATP sing 150 n n C3' H3' ATP sing 151 n n O3' HO3' ATP sing 152 n n C2' O2' ATP sing 153 n n C2' C1' ATP sing 154 n n C2' H2' ATP sing 155 n n O2' HO2' ATP sing 156 n n C1' N9 ATP sing 157 n n C1' H1' ATP sing 158 n n N9 C8 ATP sing 159 n y N9 C4 ATP sing 160 n y C8 N7 ATP doub 161 n y C8 H8 ATP sing 162 n n N7 C5 ATP sing 163 n y C5 C6 ATP sing 164 n y C5 C4 ATP doub 165 n y C6 N6 ATP sing 166 n n C6 N1 ATP doub 167 n y N6 HN61 ATP sing 168 n n N6 HN62 ATP sing 169 n n N1 C2 ATP sing 170 n y C2 N3 ATP doub 171 n y C2 H2 ATP sing 172 n n N3 C4 ATP sing 173 n y # _atom_sites.entry_id 5MW8 _atom_sites.fract_transf_matrix[1][1] 0.016622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 501 600 ATP ATP . C 3 5MY A 1 502 500 5MY 5MY . D 4 ZN A 1 503 1 ZN ZN . E 5 MG A 1 504 1 MG MG . F 5 MG A 1 505 2 MG MG . G 6 ACT A 1 506 1 ACT ACT . H 7 HOH A 1 601 34 HOH HOH . H 7 HOH A 2 602 8 HOH HOH . H 7 HOH A 3 603 27 HOH HOH . H 7 HOH A 4 604 30 HOH HOH . H 7 HOH A 5 605 23 HOH HOH . H 7 HOH A 6 606 39 HOH HOH . H 7 HOH A 7 607 20 HOH HOH . H 7 HOH A 8 608 35 HOH HOH . H 7 HOH A 9 609 37 HOH HOH . H 7 HOH A 10 610 18 HOH HOH . H 7 HOH A 11 611 12 HOH HOH . H 7 HOH A 12 612 25 HOH HOH . H 7 HOH A 13 613 21 HOH HOH . H 7 HOH A 14 614 11 HOH HOH . H 7 HOH A 15 615 16 HOH HOH . H 7 HOH A 16 616 9 HOH HOH . H 7 HOH A 17 617 5 HOH HOH . H 7 HOH A 18 618 10 HOH HOH . H 7 HOH A 19 619 32 HOH HOH . H 7 HOH A 20 620 33 HOH HOH . H 7 HOH A 21 621 17 HOH HOH . H 7 HOH A 22 622 22 HOH HOH . H 7 HOH A 23 623 24 HOH HOH . H 7 HOH A 24 624 14 HOH HOH . H 7 HOH A 25 625 4 HOH HOH . H 7 HOH A 26 626 2 HOH HOH . H 7 HOH A 27 627 15 HOH HOH . H 7 HOH A 28 628 19 HOH HOH . H 7 HOH A 29 629 31 HOH HOH . H 7 HOH A 30 630 6 HOH HOH . H 7 HOH A 31 631 36 HOH HOH . H 7 HOH A 32 632 26 HOH HOH . H 7 HOH A 33 633 38 HOH HOH . H 7 HOH A 34 634 3 HOH HOH . H 7 HOH A 35 635 28 HOH HOH . H 7 HOH A 36 636 13 HOH HOH . H 7 HOH A 37 637 29 HOH HOH . H 7 HOH A 38 638 7 HOH HOH . H 7 HOH A 39 639 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 0.236 6.301 12.74 1 53.26 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . B 2 -0.318 5.791 11.428 1 52.79 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . B 2 0.536 7.81 12.726 1 52.33 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . B 2 1.486 5.554 13.187 1 51.67 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . B 2 -2.367 5.707 13.922 1 49.87 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . B 2 -2.713 4.953 12.637 1 50.48 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . B 2 -3.15 6.96 14.025 1 49.35 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . B 2 -0.807 6.028 13.914 1 51.74 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . B 2 -1.857 3.656 15.93 1 50.99 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . B 2 -2.244 2.299 15.489 1 51.83 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . B 2 -0.371 3.887 15.657 1 51.27 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . B 2 -2.705 4.751 15.147 1 50.02 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . B 2 -2.169 3.939 17.478 1 51.96 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . B 2 -1.551 4.974 18.272 1 50.95 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . B 2 -0.702 4.365 19.362 1 51.36 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . B 2 -1.542 3.673 20.313 1 51.38 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . B 2 0.319 3.326 18.922 1 51.3 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . B 2 1.498 3.96 18.44 1 51.07 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . B 2 0.547 2.539 20.215 1 51.45 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . B 2 1.457 3.183 21.1 1 51.49 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . B 2 -0.856 2.545 20.832 1 51.93 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . B 2 -1.638 1.345 20.542 1 52.88 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . B 2 -2.446 1.111 19.461 1 53.21 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . B 2 -3.057 -0.049 19.488 1 53.62 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . B 2 -2.611 -0.626 20.667 1 53.4 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . B 2 -2.876 -1.87 21.276 1 53.5 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . B 2 -3.73 -2.772 20.783 1 53.36 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . B 2 -2.24 -2.148 22.437 1 54.18 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . B 2 -1.406 -1.235 22.95 1 54.19 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . B 2 -1.089 -0.027 22.475 1 53.69 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . B 2 -1.729 0.22 21.324 1 53 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #