data_5MW8 # _model_server_result.job_id hLpt84rrkItZH7Y7j1LM5Q _model_server_result.datetime_utc '2024-11-12 21:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5MW8 # _exptl.entry_id 5MW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.37 _cell.angle_gamma 90 _cell.entry_id 5MW8 _cell.length_a 60.162 _cell.length_b 71.495 _cell.length_c 61.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 162 A CYS 159 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 A SG CYS 165 A CYS 162 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A SG CYS 184 A CYS 181 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 294 A CYS 291 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A OD1 ASP 440 A ASP 437 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 440 A ASP 437 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 B O1G ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 B O1B ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B O3G ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B O3B ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc11 B O2A ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 C O43 5MY . A 5MY 502 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc13 F MG MG . A MG 505 1_555 H O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id 5MY _chem_comp.mon_nstd_flag . _chem_comp.name MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 P1 5MY sing 1 n n P1 O21 5MY sing 2 n n P1 O41 5MY doub 3 n n P1 O11 5MY sing 4 n n O11 C1 5MY sing 5 n n C1 C2 5MY sing 6 n n C1 C6 5MY sing 7 n n C2 O12 5MY sing 8 n n C2 C3 5MY sing 9 n n C3 O13 5MY sing 10 n n C3 C4 5MY sing 11 n n O13 P3 5MY sing 12 n n P3 O23 5MY sing 13 n n P3 O33 5MY doub 14 n n P3 O43 5MY sing 15 n n C6 O16 5MY sing 16 n n C6 C5 5MY sing 17 n n O16 P6 5MY sing 18 n n P6 O26 5MY sing 19 n n P6 O36 5MY doub 20 n n P6 O46 5MY sing 21 n n C5 O15 5MY sing 22 n n C5 C4 5MY sing 23 n n O15 P5 5MY sing 24 n n P5 O25 5MY sing 25 n n P5 O35 5MY doub 26 n n P5 O45 5MY sing 27 n n C4 O14 5MY sing 28 n n O14 P4 5MY sing 29 n n P4 O34 5MY doub 30 n n P4 O44 5MY sing 31 n n P4 O24 5MY sing 32 n n O31 H31 5MY sing 33 n n O21 H21 5MY sing 34 n n C1 H1 5MY sing 35 n n C2 H2 5MY sing 36 n n C6 H6 5MY sing 37 n n O12 H12 5MY sing 38 n n C3 H3 5MY sing 39 n n C4 H4 5MY sing 40 n n O23 H23 5MY sing 41 n n O43 H43 5MY sing 42 n n C5 H5 5MY sing 43 n n O26 H26 5MY sing 44 n n O46 H46 5MY sing 45 n n O25 H25 5MY sing 46 n n O45 H45 5MY sing 47 n n O44 H44 5MY sing 48 n n O24 H24 5MY sing 49 n n # _atom_sites.entry_id 5MW8 _atom_sites.fract_transf_matrix[1][1] 0.016622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 501 600 ATP ATP . C 3 5MY A 1 502 500 5MY 5MY . D 4 ZN A 1 503 1 ZN ZN . E 5 MG A 1 504 1 MG MG . F 5 MG A 1 505 2 MG MG . G 6 ACT A 1 506 1 ACT ACT . H 7 HOH A 1 601 34 HOH HOH . H 7 HOH A 2 602 8 HOH HOH . H 7 HOH A 3 603 27 HOH HOH . H 7 HOH A 4 604 30 HOH HOH . H 7 HOH A 5 605 23 HOH HOH . H 7 HOH A 6 606 39 HOH HOH . H 7 HOH A 7 607 20 HOH HOH . H 7 HOH A 8 608 35 HOH HOH . H 7 HOH A 9 609 37 HOH HOH . H 7 HOH A 10 610 18 HOH HOH . H 7 HOH A 11 611 12 HOH HOH . H 7 HOH A 12 612 25 HOH HOH . H 7 HOH A 13 613 21 HOH HOH . H 7 HOH A 14 614 11 HOH HOH . H 7 HOH A 15 615 16 HOH HOH . H 7 HOH A 16 616 9 HOH HOH . H 7 HOH A 17 617 5 HOH HOH . H 7 HOH A 18 618 10 HOH HOH . H 7 HOH A 19 619 32 HOH HOH . H 7 HOH A 20 620 33 HOH HOH . H 7 HOH A 21 621 17 HOH HOH . H 7 HOH A 22 622 22 HOH HOH . H 7 HOH A 23 623 24 HOH HOH . H 7 HOH A 24 624 14 HOH HOH . H 7 HOH A 25 625 4 HOH HOH . H 7 HOH A 26 626 2 HOH HOH . H 7 HOH A 27 627 15 HOH HOH . H 7 HOH A 28 628 19 HOH HOH . H 7 HOH A 29 629 31 HOH HOH . H 7 HOH A 30 630 6 HOH HOH . H 7 HOH A 31 631 36 HOH HOH . H 7 HOH A 32 632 26 HOH HOH . H 7 HOH A 33 633 38 HOH HOH . H 7 HOH A 34 634 3 HOH HOH . H 7 HOH A 35 635 28 HOH HOH . H 7 HOH A 36 636 13 HOH HOH . H 7 HOH A 37 637 29 HOH HOH . H 7 HOH A 38 638 7 HOH HOH . H 7 HOH A 39 639 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 5MY . . . C 3 2.019 11.157 12.468 1 37.01 ? O31 5MY 502 A 1 HETATM 2 P P1 5MY . . . C 3 3.479 10.944 12.15 1 36.81 ? P1 5MY 502 A 1 HETATM 3 O O21 5MY . . . C 3 4.318 10.557 13.338 1 36.71 ? O21 5MY 502 A 1 HETATM 4 O O41 5MY . . . C 3 4.089 12.044 11.319 1 37.46 ? O41 5MY 502 A 1 HETATM 5 O O11 5MY . . . C 3 3.515 9.639 11.198 1 36.07 ? O11 5MY 502 A 1 HETATM 6 C C1 5MY . . . C 3 2.996 9.647 9.865 1 35.91 ? C1 5MY 502 A 1 HETATM 7 C C2 5MY . . . C 3 1.807 8.705 9.787 1 36.8 ? C2 5MY 502 A 1 HETATM 8 O O12 5MY . . . C 3 2.214 7.393 10.175 1 36.87 ? O12 5MY 502 A 1 HETATM 9 C C3 5MY . . . C 3 1.211 8.663 8.383 1 38.12 ? C3 5MY 502 A 1 HETATM 10 O O13 5MY . . . C 3 0.233 7.621 8.3 1 40.64 ? O13 5MY 502 A 1 HETATM 11 P P3 5MY . . . C 3 -1.35 7.912 8.401 1 40.62 ? P3 5MY 502 A 1 HETATM 12 O O23 5MY . . . C 3 -1.465 8.744 9.645 1 40.57 ? O23 5MY 502 A 1 HETATM 13 O O33 5MY . . . C 3 -1.656 8.632 7.114 1 40.64 ? O33 5MY 502 A 1 HETATM 14 O O43 5MY . . . C 3 -1.988 6.551 8.532 1 40.8 ? O43 5MY 502 A 1 HETATM 15 C C6 5MY . . . C 3 4.063 9.215 8.865 1 35.5 ? C6 5MY 502 A 1 HETATM 16 O O16 5MY . . . C 3 5.165 10.111 8.927 1 34.55 ? O16 5MY 502 A 1 HETATM 17 P P6 5MY . . . C 3 6.569 9.777 9.644 1 33.34 ? P6 5MY 502 A 1 HETATM 18 O O26 5MY . . . C 3 6.429 8.413 10.263 1 32.98 ? O26 5MY 502 A 1 HETATM 19 O O36 5MY . . . C 3 7.597 9.857 8.547 1 32.88 ? O36 5MY 502 A 1 HETATM 20 O O46 5MY . . . C 3 6.716 10.889 10.653 1 33.89 ? O46 5MY 502 A 1 HETATM 21 C C5 5MY . . . C 3 3.531 9.214 7.442 1 36.48 ? C5 5MY 502 A 1 HETATM 22 O O15 5MY . . . C 3 4.495 8.614 6.575 1 36.88 ? O15 5MY 502 A 1 HETATM 23 P P5 5MY . . . C 3 5.451 9.4 5.534 1 37.51 ? P5 5MY 502 A 1 HETATM 24 O O25 5MY . . . C 3 4.895 10.793 5.36 1 38.31 ? O25 5MY 502 A 1 HETATM 25 O O35 5MY . . . C 3 5.398 8.562 4.279 1 37.65 ? O35 5MY 502 A 1 HETATM 26 O O45 5MY . . . C 3 6.787 9.373 6.214 1 37.64 ? O45 5MY 502 A 1 HETATM 27 C C4 5MY . . . C 3 2.253 8.401 7.3 1 37.63 ? C4 5MY 502 A 1 HETATM 28 O O14 5MY . . . C 3 1.661 8.759 6.059 1 38.33 ? O14 5MY 502 A 1 HETATM 29 P P4 5MY . . . C 3 1.64 7.849 4.732 1 40.5 ? P4 5MY 502 A 1 HETATM 30 O O34 5MY . . . C 3 2.564 8.574 3.791 1 40.76 ? O34 5MY 502 A 1 HETATM 31 O O44 5MY . . . C 3 0.186 7.923 4.333 1 40.62 ? O44 5MY 502 A 1 HETATM 32 O O24 5MY . . . C 3 2.141 6.473 5.1 1 39.72 ? O24 5MY 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #