data_5MW8 # _model_server_result.job_id O6CE5Z4OnIbPpZNReAiBeA _model_server_result.datetime_utc '2024-11-23 23:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5MW8 # _exptl.entry_id 5MW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.37 _cell.angle_gamma 90 _cell.entry_id 5MW8 _cell.length_a 60.162 _cell.length_b 71.495 _cell.length_c 61.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 162 A CYS 159 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 A SG CYS 165 A CYS 162 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A SG CYS 184 A CYS 181 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 294 A CYS 291 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A OD1 ASP 440 A ASP 437 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 440 A ASP 437 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 B O1G ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 B O1B ATP . A ATP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B O3G ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B O3B ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc11 B O2A ATP . A ATP 501 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 C O43 5MY . A 5MY 502 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc13 F MG MG . A MG 505 1_555 H O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MW8 _atom_sites.fract_transf_matrix[1][1] 0.016622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 501 600 ATP ATP . C 3 5MY A 1 502 500 5MY 5MY . D 4 ZN A 1 503 1 ZN ZN . E 5 MG A 1 504 1 MG MG . F 5 MG A 1 505 2 MG MG . G 6 ACT A 1 506 1 ACT ACT . H 7 HOH A 1 601 34 HOH HOH . H 7 HOH A 2 602 8 HOH HOH . H 7 HOH A 3 603 27 HOH HOH . H 7 HOH A 4 604 30 HOH HOH . H 7 HOH A 5 605 23 HOH HOH . H 7 HOH A 6 606 39 HOH HOH . H 7 HOH A 7 607 20 HOH HOH . H 7 HOH A 8 608 35 HOH HOH . H 7 HOH A 9 609 37 HOH HOH . H 7 HOH A 10 610 18 HOH HOH . H 7 HOH A 11 611 12 HOH HOH . H 7 HOH A 12 612 25 HOH HOH . H 7 HOH A 13 613 21 HOH HOH . H 7 HOH A 14 614 11 HOH HOH . H 7 HOH A 15 615 16 HOH HOH . H 7 HOH A 16 616 9 HOH HOH . H 7 HOH A 17 617 5 HOH HOH . H 7 HOH A 18 618 10 HOH HOH . H 7 HOH A 19 619 32 HOH HOH . H 7 HOH A 20 620 33 HOH HOH . H 7 HOH A 21 621 17 HOH HOH . H 7 HOH A 22 622 22 HOH HOH . H 7 HOH A 23 623 24 HOH HOH . H 7 HOH A 24 624 14 HOH HOH . H 7 HOH A 25 625 4 HOH HOH . H 7 HOH A 26 626 2 HOH HOH . H 7 HOH A 27 627 15 HOH HOH . H 7 HOH A 28 628 19 HOH HOH . H 7 HOH A 29 629 31 HOH HOH . H 7 HOH A 30 630 6 HOH HOH . H 7 HOH A 31 631 36 HOH HOH . H 7 HOH A 32 632 26 HOH HOH . H 7 HOH A 33 633 38 HOH HOH . H 7 HOH A 34 634 3 HOH HOH . H 7 HOH A 35 635 28 HOH HOH . H 7 HOH A 36 636 13 HOH HOH . H 7 HOH A 37 637 29 HOH HOH . H 7 HOH A 38 638 7 HOH HOH . H 7 HOH A 39 639 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.723 _atom_site.Cartn_y 4.785 _atom_site.Cartn_z 5.512 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #