data_5MWB # _model_server_result.job_id tYJwfuiOpxlZfSCNLY71uA _model_server_result.datetime_utc '2024-12-26 22:07:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":607}' # _entry.id 5MWB # _exptl.entry_id 5MWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MWB _cell.length_a 20.16 _cell.length_b 49.79 _cell.length_c 125.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 XYP _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 601 BGC 2 n B XYP 2 B 2 XYP A 602 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 419 1_555 A SG CYS 20 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 14 A CYS 427 1_555 A SG CYS 29 A CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 31 A CYS 444 1_555 A SG CYS 40 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 47 A CYS 460 1_555 A SG CYS 58 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 52 A CYS 465 1_555 A SG CYS 67 A CYS 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 69 A CYS 482 1_555 A SG CYS 78 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 85 A CYS 498 1_555 A SG CYS 96 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 90 A CYS 503 1_555 A SG CYS 105 A CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 107 A CYS 520 1_555 A SG CYS 116 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A OG SER 49 A SER 462 1_555 B C1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 A OG1 THR 57 A THR 470 1_555 C C1 FUC . A FUC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 A OG SER 87 A SER 500 1_555 D C1 BGC . A BGC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale4 B O3 BGC . B BGC 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OD1 ASP 2 A ASP 415 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A OD2 ASP 2 A ASP 415 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc3 A O VAL 3 A VAL 416 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 A OE1 GLU 5 A GLU 418 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 A OD1 ASN 22 A ASN 435 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 A O THR 23 A THR 436 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 A O ALA 26 A ALA 439 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc8 A OD1 ASP 43 A ASP 456 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 A O ILE 44 A ILE 457 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 A OE1 GLU 46 A GLU 459 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc11 A OD1 ASP 60 A ASP 473 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A OD2 ASP 60 A ASP 473 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc13 A O LYS 61 A LYS 474 1_555 G CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc14 A OE2 GLU 81 A GLU 494 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc15 A O ILE 82 A ILE 495 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc16 A OE1 GLU 84 A GLU 497 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc17 A OD1 ASP 98 A ASP 511 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 A OD2 ASP 98 A ASP 511 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc19 A O LYS 99 A LYS 512 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc20 E CA CA . A CA 605 1_555 H O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc21 F CA CA . A CA 606 1_555 H O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc22 G CA CA . A CA 607 1_555 H O HOH . A HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc23 G CA CA . A CA 607 1_555 H O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MWB _atom_sites.fract_transf_matrix[1][1] 0.049603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FUC A 1 603 603 FUC FUC . D 4 BGC A 1 604 604 BGC BGC . E 5 CA A 1 605 1 CA CA . F 5 CA A 1 606 2 CA CA . G 5 CA A 1 607 3 CA CA . H 6 HOH A 1 701 23 HOH HOH . H 6 HOH A 2 702 27 HOH HOH . H 6 HOH A 3 703 1 HOH HOH . H 6 HOH A 4 704 95 HOH HOH . H 6 HOH A 5 705 13 HOH HOH . H 6 HOH A 6 706 37 HOH HOH . H 6 HOH A 7 707 128 HOH HOH . H 6 HOH A 8 708 124 HOH HOH . H 6 HOH A 9 709 126 HOH HOH . H 6 HOH A 10 710 10 HOH HOH . H 6 HOH A 11 711 36 HOH HOH . H 6 HOH A 12 712 25 HOH HOH . H 6 HOH A 13 713 79 HOH HOH . H 6 HOH A 14 714 71 HOH HOH . H 6 HOH A 15 715 109 HOH HOH . H 6 HOH A 16 716 81 HOH HOH . H 6 HOH A 17 717 120 HOH HOH . H 6 HOH A 18 718 62 HOH HOH . H 6 HOH A 19 719 115 HOH HOH . H 6 HOH A 20 720 3 HOH HOH . H 6 HOH A 21 721 77 HOH HOH . H 6 HOH A 22 722 72 HOH HOH . H 6 HOH A 23 723 70 HOH HOH . H 6 HOH A 24 724 39 HOH HOH . H 6 HOH A 25 725 8 HOH HOH . H 6 HOH A 26 726 5 HOH HOH . H 6 HOH A 27 727 17 HOH HOH . H 6 HOH A 28 728 47 HOH HOH . H 6 HOH A 29 729 33 HOH HOH . H 6 HOH A 30 730 86 HOH HOH . H 6 HOH A 31 731 129 HOH HOH . H 6 HOH A 32 732 52 HOH HOH . H 6 HOH A 33 733 48 HOH HOH . H 6 HOH A 34 734 121 HOH HOH . H 6 HOH A 35 735 11 HOH HOH . H 6 HOH A 36 736 54 HOH HOH . H 6 HOH A 37 737 46 HOH HOH . H 6 HOH A 38 738 15 HOH HOH . H 6 HOH A 39 739 14 HOH HOH . H 6 HOH A 40 740 65 HOH HOH . H 6 HOH A 41 741 4 HOH HOH . H 6 HOH A 42 742 35 HOH HOH . H 6 HOH A 43 743 102 HOH HOH . H 6 HOH A 44 744 30 HOH HOH . H 6 HOH A 45 745 68 HOH HOH . H 6 HOH A 46 746 61 HOH HOH . H 6 HOH A 47 747 2 HOH HOH . H 6 HOH A 48 748 28 HOH HOH . H 6 HOH A 49 749 87 HOH HOH . H 6 HOH A 50 750 80 HOH HOH . H 6 HOH A 51 751 21 HOH HOH . H 6 HOH A 52 752 12 HOH HOH . H 6 HOH A 53 753 63 HOH HOH . H 6 HOH A 54 754 38 HOH HOH . H 6 HOH A 55 755 31 HOH HOH . H 6 HOH A 56 756 83 HOH HOH . H 6 HOH A 57 757 32 HOH HOH . H 6 HOH A 58 758 24 HOH HOH . H 6 HOH A 59 759 91 HOH HOH . H 6 HOH A 60 760 73 HOH HOH . H 6 HOH A 61 761 49 HOH HOH . H 6 HOH A 62 762 78 HOH HOH . H 6 HOH A 63 763 119 HOH HOH . H 6 HOH A 64 764 118 HOH HOH . H 6 HOH A 65 765 85 HOH HOH . H 6 HOH A 66 766 89 HOH HOH . H 6 HOH A 67 767 53 HOH HOH . H 6 HOH A 68 768 90 HOH HOH . H 6 HOH A 69 769 20 HOH HOH . H 6 HOH A 70 770 50 HOH HOH . H 6 HOH A 71 771 34 HOH HOH . H 6 HOH A 72 772 111 HOH HOH . H 6 HOH A 73 773 22 HOH HOH . H 6 HOH A 74 774 64 HOH HOH . H 6 HOH A 75 775 9 HOH HOH . H 6 HOH A 76 776 51 HOH HOH . H 6 HOH A 77 777 108 HOH HOH . H 6 HOH A 78 778 67 HOH HOH . H 6 HOH A 79 779 19 HOH HOH . H 6 HOH A 80 780 58 HOH HOH . H 6 HOH A 81 781 104 HOH HOH . H 6 HOH A 82 782 16 HOH HOH . H 6 HOH A 83 783 29 HOH HOH . H 6 HOH A 84 784 59 HOH HOH . H 6 HOH A 85 785 55 HOH HOH . H 6 HOH A 86 786 6 HOH HOH . H 6 HOH A 87 787 125 HOH HOH . H 6 HOH A 88 788 88 HOH HOH . H 6 HOH A 89 789 69 HOH HOH . H 6 HOH A 90 790 92 HOH HOH . H 6 HOH A 91 791 18 HOH HOH . H 6 HOH A 92 792 110 HOH HOH . H 6 HOH A 93 793 76 HOH HOH . H 6 HOH A 94 794 56 HOH HOH . H 6 HOH A 95 795 117 HOH HOH . H 6 HOH A 96 796 100 HOH HOH . H 6 HOH A 97 797 84 HOH HOH . H 6 HOH A 98 798 74 HOH HOH . H 6 HOH A 99 799 96 HOH HOH . H 6 HOH A 100 800 114 HOH HOH . H 6 HOH A 101 801 130 HOH HOH . H 6 HOH A 102 802 123 HOH HOH . H 6 HOH A 103 803 26 HOH HOH . H 6 HOH A 104 804 107 HOH HOH . H 6 HOH A 105 805 106 HOH HOH . H 6 HOH A 106 806 7 HOH HOH . H 6 HOH A 107 807 41 HOH HOH . H 6 HOH A 108 808 66 HOH HOH . H 6 HOH A 109 809 42 HOH HOH . H 6 HOH A 110 810 112 HOH HOH . H 6 HOH A 111 811 82 HOH HOH . H 6 HOH A 112 812 127 HOH HOH . H 6 HOH A 113 813 105 HOH HOH . H 6 HOH A 114 814 93 HOH HOH . H 6 HOH A 115 815 122 HOH HOH . H 6 HOH A 116 816 75 HOH HOH . H 6 HOH A 117 817 43 HOH HOH . H 6 HOH A 118 818 99 HOH HOH . H 6 HOH A 119 819 44 HOH HOH . H 6 HOH A 120 820 98 HOH HOH . H 6 HOH A 121 821 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -9.67 _atom_site.Cartn_y -17.328 _atom_site.Cartn_z -7.244 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.58 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 607 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #