data_5MWL # _model_server_result.job_id InDkuYPhW-RwA0cLX_wWCQ _model_server_result.datetime_utc '2024-11-30 20:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5MWL # _exptl.entry_id 5MWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.53 _cell.angle_gamma 90 _cell.entry_id 5MWL _cell.length_a 64.623 _cell.length_b 140.758 _cell.length_c 68.662 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,K 1 1 B,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 128 A HIS 125 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 A NE2 HIS 132 A HIS 129 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A SG CYS 162 A CYS 159 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A SG CYS 165 A CYS 162 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc6 A SG CYS 294 A CYS 291 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc7 A OG SER 405 A SER 402 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 A SG CYS 413 A CYS 410 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc9 A OD2 ASP 440 A ASP 437 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 C O1B ATP . A ATP 501 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc11 C O2A ATP . A ATP 501 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc12 D O43 5MY . A 5MY 502 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc13 F ZN ZN . A ZN 504 1_555 K O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc14 B ND1 HIS 128 B HIS 125 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc15 B NE2 HIS 132 B HIS 129 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc16 B SG CYS 162 B CYS 159 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc17 B SG CYS 165 B CYS 162 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 B SG CYS 184 B CYS 181 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc19 B SG CYS 294 B CYS 291 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc20 B SG CYS 413 B CYS 410 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc21 J ZN ZN . B ZN 502 1_555 L O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 119 n n PG O2G ATP sing 120 n n PG O3G ATP sing 121 n n PG O3B ATP sing 122 n n O2G HOG2 ATP sing 123 n n O3G HOG3 ATP sing 124 n n PB O1B ATP doub 125 n n PB O2B ATP sing 126 n n PB O3B ATP sing 127 n n PB O3A ATP sing 128 n n O2B HOB2 ATP sing 129 n n PA O1A ATP doub 130 n n PA O2A ATP sing 131 n n PA O3A ATP sing 132 n n PA O5' ATP sing 133 n n O2A HOA2 ATP sing 134 n n O5' C5' ATP sing 135 n n C5' C4' ATP sing 136 n n C5' "H5'1" ATP sing 137 n n C5' "H5'2" ATP sing 138 n n C4' O4' ATP sing 139 n n C4' C3' ATP sing 140 n n C4' H4' ATP sing 141 n n O4' C1' ATP sing 142 n n C3' O3' ATP sing 143 n n C3' C2' ATP sing 144 n n C3' H3' ATP sing 145 n n O3' HO3' ATP sing 146 n n C2' O2' ATP sing 147 n n C2' C1' ATP sing 148 n n C2' H2' ATP sing 149 n n O2' HO2' ATP sing 150 n n C1' N9 ATP sing 151 n n C1' H1' ATP sing 152 n n N9 C8 ATP sing 153 n y N9 C4 ATP sing 154 n y C8 N7 ATP doub 155 n y C8 H8 ATP sing 156 n n N7 C5 ATP sing 157 n y C5 C6 ATP sing 158 n y C5 C4 ATP doub 159 n y C6 N6 ATP sing 160 n n C6 N1 ATP doub 161 n y N6 HN61 ATP sing 162 n n N6 HN62 ATP sing 163 n n N1 C2 ATP sing 164 n y C2 N3 ATP doub 165 n y C2 H2 ATP sing 166 n n N3 C4 ATP sing 167 n y # _atom_sites.entry_id 5MWL _atom_sites.fract_transf_matrix[1][1] 0.015474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 501 600 ATP ATP . D 3 5MY A 1 502 500 5MY 5MY . E 4 ZN A 1 503 3 ZN ZN . F 4 ZN A 1 504 4 ZN ZN . G 5 MG A 1 505 1 MG MG . H 5 MG A 1 506 2 MG MG . I 4 ZN B 1 501 1 ZN ZN . J 4 ZN B 1 502 2 ZN ZN . K 6 HOH A 1 601 1 HOH HOH . K 6 HOH A 2 602 3 HOH HOH . L 6 HOH B 1 601 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 74.085 8.121 28.569 1 169.12 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . C 2 73.905 7.534 27.207 1 166.7 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . C 2 75.542 8.419 28.907 1 167.04 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . C 2 73.511 7.225 29.677 1 162.03 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . C 2 73.069 10.781 27.757 1 165.19 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . C 2 72.631 10.313 26.369 1 166.16 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . C 2 74.3 11.593 27.637 1 159.09 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . C 2 73.317 9.513 28.694 1 171.36 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . C 2 70.552 11.252 29.168 1 173.7 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . C 2 69.432 11.164 28.198 1 176.13 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . C 2 70.779 9.87 29.784 1 175.11 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . C 2 71.896 11.645 28.405 1 166.9 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . C 2 70.233 12.296 30.357 1 165.15 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . C 2 70.746 12.197 31.706 1 156.98 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . C 2 69.642 11.824 32.668 1 153.78 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . C 2 68.527 12.723 32.513 1 148.17 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . C 2 69.033 10.44 32.491 1 155.32 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . C 2 69.827 9.432 33.108 1 156.33 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . C 2 67.655 10.593 33.151 1 153.43 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . C 2 67.618 10.309 34.542 1 159.52 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . C 2 67.34 12.081 32.948 1 146.96 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . C 2 66.288 12.303 31.964 1 139 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . C 2 66.426 12.434 30.608 1 135.86 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . C 2 65.29 12.534 29.961 1 131.46 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . C 2 64.334 12.463 30.964 1 128.85 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . C 2 62.925 12.483 30.937 1 121.89 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . C 2 62.207 12.565 29.815 1 117.84 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . C 2 62.272 12.381 32.118 1 117.88 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . C 2 62.989 12.259 33.241 1 119.3 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . C 2 64.316 12.221 33.388 1 123.29 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . C 2 64.936 12.328 32.205 1 131.22 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #