data_5MWM # _model_server_result.job_id pFJVuu5fZtp56_GlsTAGHA _model_server_result.datetime_utc '2024-11-22 10:21:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5MWM # _exptl.entry_id 5MWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.66 _cell.angle_gamma 90 _cell.entry_id 5MWM _cell.length_a 60.55 _cell.length_b 71.637 _cell.length_c 61.822 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 162 A CYS 159 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A SG CYS 165 A CYS 162 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A SG CYS 184 A CYS 181 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 A SG CYS 294 A CYS 291 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 5MWM _atom_sites.fract_transf_matrix[1][1] 0.016515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006559 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP A 1 501 500 IHP I6P . C 3 ZN A 1 502 1 ZN ZN . D 4 HOH A 1 601 25 HOH HOH . D 4 HOH A 2 602 19 HOH HOH . D 4 HOH A 3 603 29 HOH HOH . D 4 HOH A 4 604 24 HOH HOH . D 4 HOH A 5 605 1 HOH HOH . D 4 HOH A 6 606 8 HOH HOH . D 4 HOH A 7 607 12 HOH HOH . D 4 HOH A 8 608 20 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 22 HOH HOH . D 4 HOH A 11 611 4 HOH HOH . D 4 HOH A 12 612 9 HOH HOH . D 4 HOH A 13 613 30 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 7 HOH HOH . D 4 HOH A 16 616 21 HOH HOH . D 4 HOH A 17 617 15 HOH HOH . D 4 HOH A 18 618 14 HOH HOH . D 4 HOH A 19 619 17 HOH HOH . D 4 HOH A 20 620 6 HOH HOH . D 4 HOH A 21 621 5 HOH HOH . D 4 HOH A 22 622 10 HOH HOH . D 4 HOH A 23 623 3 HOH HOH . D 4 HOH A 24 624 2 HOH HOH . D 4 HOH A 25 625 13 HOH HOH . D 4 HOH A 26 626 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . B 2 2.161 8.405 7.345 1 61.65 ? C1 IHP 501 A 1 HETATM 2 C C2 IHP . . . B 2 1.065 8.814 8.322 1 64.89 ? C2 IHP 501 A 1 HETATM 3 C C3 IHP . . . B 2 1.561 8.957 9.762 1 68.95 ? C3 IHP 501 A 1 HETATM 4 C C4 IHP . . . B 2 2.907 9.658 9.876 1 62.94 ? C4 IHP 501 A 1 HETATM 5 C C5 IHP . . . B 2 3.962 9.097 8.948 1 58.73 ? C5 IHP 501 A 1 HETATM 6 C C6 IHP . . . B 2 3.485 9.131 7.513 1 59.84 ? C6 IHP 501 A 1 HETATM 7 O O11 IHP . . . B 2 1.666 8.791 6.044 1 61.63 ? O11 IHP 501 A 1 HETATM 8 P P1 IHP . . . B 2 1.539 7.906 4.667 1 63.3 ? P1 IHP 501 A 1 HETATM 9 O O21 IHP . . . B 2 0.366 8.435 3.874 1 63.26 ? O21 IHP 501 A 1 HETATM 10 O O31 IHP . . . B 2 2.852 8.057 3.912 1 60.54 ? O31 IHP 501 A 1 HETATM 11 O O41 IHP . . . B 2 1.408 6.432 5.054 1 62.4 ? O41 IHP 501 A 1 HETATM 12 O O12 IHP . . . B 2 0.026 7.813 8.249 1 62.14 ? O12 IHP 501 A 1 HETATM 13 P P2 IHP . . . B 2 -1.559 8.09 8.1 1 58 ? P2 IHP 501 A 1 HETATM 14 O O22 IHP . . . B 2 -2.188 6.903 7.397 1 56.66 ? O22 IHP 501 A 1 HETATM 15 O O32 IHP . . . B 2 -1.828 9.37 7.386 1 56.41 ? O32 IHP 501 A 1 HETATM 16 O O42 IHP . . . B 2 -2.026 8.059 9.542 1 58.84 ? O42 IHP 501 A 1 HETATM 17 O O13 IHP . . . B 2 1.565 7.665 10.418 1 85.65 ? O13 IHP 501 A 1 HETATM 18 P P3 IHP . . . B 2 0.91 7.399 11.974 1 106.45 ? P3 IHP 501 A 1 HETATM 19 O O23 IHP . . . B 2 1.831 7.929 13.063 1 103.49 ? O23 IHP 501 A 1 HETATM 20 O O33 IHP . . . B 2 -0.488 8.064 12.047 1 104.41 ? O33 IHP 501 A 1 HETATM 21 O O43 IHP . . . B 2 0.691 5.876 12.129 1 102.74 ? O43 IHP 501 A 1 HETATM 22 O O14 IHP . . . B 2 3.396 9.49 11.22 1 62.68 ? O14 IHP 501 A 1 HETATM 23 P P4 IHP . . . B 2 3.569 10.675 12.261 1 62.18 ? P4 IHP 501 A 1 HETATM 24 O O24 IHP . . . B 2 4.007 10.01 13.564 1 63.2 ? O24 IHP 501 A 1 HETATM 25 O O34 IHP . . . B 2 4.519 11.67 11.708 1 63.63 ? O34 IHP 501 A 1 HETATM 26 O O44 IHP . . . B 2 2.158 11.221 12.477 1 64.17 ? O44 IHP 501 A 1 HETATM 27 O O15 IHP . . . B 2 5.116 9.956 9.056 1 53.46 ? O15 IHP 501 A 1 HETATM 28 P P5 IHP . . . B 2 6.644 9.72 9.468 1 47.53 ? P5 IHP 501 A 1 HETATM 29 O O25 IHP . . . B 2 6.838 8.222 9.708 1 46.44 ? O25 IHP 501 A 1 HETATM 30 O O35 IHP . . . B 2 6.89 10.47 10.789 1 45.25 ? O35 IHP 501 A 1 HETATM 31 O O45 IHP . . . B 2 7.475 10.24 8.362 1 48.15 ? O45 IHP 501 A 1 HETATM 32 O O16 IHP . . . B 2 4.472 8.444 6.71 1 58.24 ? O16 IHP 501 A 1 HETATM 33 P P6 IHP . . . B 2 5.417 9.137 5.595 1 57.47 ? P6 IHP 501 A 1 HETATM 34 O O26 IHP . . . B 2 6.28 10.113 6.348 1 59.21 ? O26 IHP 501 A 1 HETATM 35 O O36 IHP . . . B 2 4.638 9.803 4.505 1 57.02 ? O36 IHP 501 A 1 HETATM 36 O O46 IHP . . . B 2 6.343 8.073 5.057 1 58.2 ? O46 IHP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 36 #