data_5MXB # _model_server_result.job_id BPk9e7v5RdWAzwV05ZaBjA _model_server_result.datetime_utc '2024-11-12 23:50:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":221}' # _entry.id 5MXB # _exptl.entry_id 5MXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MXB _cell.length_a 74.469 _cell.length_b 74.469 _cell.length_c 67.11 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 31 A PRO 31 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A O VAL 34 A VAL 34 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A O ILE 37 A ILE 37 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 V NA NA . A NA 221 1_555 X O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc5 V NA NA . A NA 221 1_555 X O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc6 V NA NA . A NA 221 1_555 X O HOH . A HOH 379 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MXB _atom_sites.fract_transf_matrix[1][1] 0.013428 _atom_sites.fract_transf_matrix[1][2] 0.007753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 201 177 UNL UNL . C 2 UNL A 1 202 178 UNL UNL . D 2 UNL A 1 203 180 UNL UNL . E 2 UNL A 1 204 181 UNL UNL . F 2 UNL A 1 205 182 UNL UNL . G 2 UNL A 1 206 183 UNL UNL . H 2 UNL A 1 207 184 UNL UNL . I 2 UNL A 1 208 185 UNL UNL . J 2 UNL A 1 209 186 UNL UNL . K 2 UNL A 1 210 187 UNL UNL . L 2 UNL A 1 211 188 UNL UNL . M 2 UNL A 1 212 190 UNL UNL . N 2 UNL A 1 213 191 UNL UNL . O 2 UNL A 1 214 192 UNL UNL . P 2 UNL A 1 215 193 UNL UNL . Q 2 UNL A 1 216 194 UNL UNL . R 2 UNL A 1 217 195 UNL UNL . S 2 UNL A 1 218 196 UNL UNL . T 2 UNL A 1 219 197 UNL UNL . U 3 ML1 A 1 220 1 ML1 ML1 . V 4 NA A 1 221 1 NA NA . W 3 ML1 A 1 222 1 ML1 ML1 . X 5 HOH A 1 301 146 HOH HOH . X 5 HOH A 2 302 48 HOH HOH . X 5 HOH A 3 303 72 HOH HOH . X 5 HOH A 4 304 158 HOH HOH . X 5 HOH A 5 305 34 HOH HOH . X 5 HOH A 6 306 2 HOH HOH . X 5 HOH A 7 307 143 HOH HOH . X 5 HOH A 8 308 60 HOH HOH . X 5 HOH A 9 309 154 HOH HOH . X 5 HOH A 10 310 23 HOH HOH . X 5 HOH A 11 311 126 HOH HOH . X 5 HOH A 12 312 175 HOH HOH . X 5 HOH A 13 313 104 HOH HOH . X 5 HOH A 14 314 129 HOH HOH . X 5 HOH A 15 315 66 HOH HOH . X 5 HOH A 16 316 5 HOH HOH . X 5 HOH A 17 317 63 HOH HOH . X 5 HOH A 18 318 161 HOH HOH . X 5 HOH A 19 319 12 HOH HOH . X 5 HOH A 20 320 89 HOH HOH . X 5 HOH A 21 321 167 HOH HOH . X 5 HOH A 22 322 22 HOH HOH . X 5 HOH A 23 323 53 HOH HOH . X 5 HOH A 24 324 101 HOH HOH . X 5 HOH A 25 325 92 HOH HOH . X 5 HOH A 26 326 36 HOH HOH . X 5 HOH A 27 327 132 HOH HOH . X 5 HOH A 28 328 153 HOH HOH . X 5 HOH A 29 329 7 HOH HOH . X 5 HOH A 30 330 8 HOH HOH . X 5 HOH A 31 331 124 HOH HOH . X 5 HOH A 32 332 166 HOH HOH . X 5 HOH A 33 333 21 HOH HOH . X 5 HOH A 34 334 38 HOH HOH . X 5 HOH A 35 335 68 HOH HOH . X 5 HOH A 36 336 76 HOH HOH . X 5 HOH A 37 337 176 HOH HOH . X 5 HOH A 38 338 133 HOH HOH . X 5 HOH A 39 339 37 HOH HOH . X 5 HOH A 40 340 10 HOH HOH . X 5 HOH A 41 341 45 HOH HOH . X 5 HOH A 42 342 62 HOH HOH . X 5 HOH A 43 343 163 HOH HOH . X 5 HOH A 44 344 9 HOH HOH . X 5 HOH A 45 345 15 HOH HOH . X 5 HOH A 46 346 49 HOH HOH . X 5 HOH A 47 347 54 HOH HOH . X 5 HOH A 48 348 61 HOH HOH . X 5 HOH A 49 349 88 HOH HOH . X 5 HOH A 50 350 47 HOH HOH . X 5 HOH A 51 351 136 HOH HOH . X 5 HOH A 52 352 77 HOH HOH . X 5 HOH A 53 353 55 HOH HOH . X 5 HOH A 54 354 17 HOH HOH . X 5 HOH A 55 355 46 HOH HOH . X 5 HOH A 56 356 137 HOH HOH . X 5 HOH A 57 357 50 HOH HOH . X 5 HOH A 58 358 102 HOH HOH . X 5 HOH A 59 359 70 HOH HOH . X 5 HOH A 60 360 82 HOH HOH . X 5 HOH A 61 361 28 HOH HOH . X 5 HOH A 62 362 145 HOH HOH . X 5 HOH A 63 363 33 HOH HOH . X 5 HOH A 64 364 27 HOH HOH . X 5 HOH A 65 365 39 HOH HOH . X 5 HOH A 66 366 35 HOH HOH . X 5 HOH A 67 367 13 HOH HOH . X 5 HOH A 68 368 165 HOH HOH . X 5 HOH A 69 369 90 HOH HOH . X 5 HOH A 70 370 91 HOH HOH . X 5 HOH A 71 371 95 HOH HOH . X 5 HOH A 72 372 123 HOH HOH . X 5 HOH A 73 373 122 HOH HOH . X 5 HOH A 74 374 4 HOH HOH . X 5 HOH A 75 375 11 HOH HOH . X 5 HOH A 76 376 125 HOH HOH . X 5 HOH A 77 377 67 HOH HOH . X 5 HOH A 78 378 78 HOH HOH . X 5 HOH A 79 379 31 HOH HOH . X 5 HOH A 80 380 29 HOH HOH . X 5 HOH A 81 381 30 HOH HOH . X 5 HOH A 82 382 84 HOH HOH . X 5 HOH A 83 383 51 HOH HOH . X 5 HOH A 84 384 128 HOH HOH . X 5 HOH A 85 385 87 HOH HOH . X 5 HOH A 86 386 26 HOH HOH . X 5 HOH A 87 387 1 HOH HOH . X 5 HOH A 88 388 168 HOH HOH . X 5 HOH A 89 389 42 HOH HOH . X 5 HOH A 90 390 24 HOH HOH . X 5 HOH A 91 391 20 HOH HOH . X 5 HOH A 92 392 6 HOH HOH . X 5 HOH A 93 393 69 HOH HOH . X 5 HOH A 94 394 162 HOH HOH . X 5 HOH A 95 395 43 HOH HOH . X 5 HOH A 96 396 138 HOH HOH . X 5 HOH A 97 397 131 HOH HOH . X 5 HOH A 98 398 93 HOH HOH . X 5 HOH A 99 399 44 HOH HOH . X 5 HOH A 100 400 14 HOH HOH . X 5 HOH A 101 401 130 HOH HOH . X 5 HOH A 102 402 3 HOH HOH . X 5 HOH A 103 403 74 HOH HOH . X 5 HOH A 104 404 56 HOH HOH . X 5 HOH A 105 405 135 HOH HOH . X 5 HOH A 106 406 40 HOH HOH . X 5 HOH A 107 407 71 HOH HOH . X 5 HOH A 108 408 16 HOH HOH . X 5 HOH A 109 409 96 HOH HOH . X 5 HOH A 110 410 148 HOH HOH . X 5 HOH A 111 411 80 HOH HOH . X 5 HOH A 112 412 81 HOH HOH . X 5 HOH A 113 413 170 HOH HOH . X 5 HOH A 114 414 59 HOH HOH . X 5 HOH A 115 415 100 HOH HOH . X 5 HOH A 116 416 160 HOH HOH . X 5 HOH A 117 417 164 HOH HOH . X 5 HOH A 118 418 139 HOH HOH . X 5 HOH A 119 419 19 HOH HOH . X 5 HOH A 120 420 64 HOH HOH . X 5 HOH A 121 421 169 HOH HOH . X 5 HOH A 122 422 103 HOH HOH . X 5 HOH A 123 423 149 HOH HOH . X 5 HOH A 124 424 86 HOH HOH . X 5 HOH A 125 425 52 HOH HOH . X 5 HOH A 126 426 32 HOH HOH . X 5 HOH A 127 427 97 HOH HOH . X 5 HOH A 128 428 152 HOH HOH . X 5 HOH A 129 429 99 HOH HOH . X 5 HOH A 130 430 141 HOH HOH . X 5 HOH A 131 431 94 HOH HOH . X 5 HOH A 132 432 75 HOH HOH . X 5 HOH A 133 433 58 HOH HOH . X 5 HOH A 134 434 147 HOH HOH . X 5 HOH A 135 435 73 HOH HOH . X 5 HOH A 136 436 79 HOH HOH . X 5 HOH A 137 437 144 HOH HOH . X 5 HOH A 138 438 41 HOH HOH . X 5 HOH A 139 439 85 HOH HOH . X 5 HOH A 140 440 18 HOH HOH . X 5 HOH A 141 441 150 HOH HOH . X 5 HOH A 142 442 151 HOH HOH . X 5 HOH A 143 443 98 HOH HOH . X 5 HOH A 144 444 65 HOH HOH . X 5 HOH A 145 445 57 HOH HOH . X 5 HOH A 146 446 140 HOH HOH . X 5 HOH A 147 447 83 HOH HOH . X 5 HOH A 148 448 159 HOH HOH . X 5 HOH A 149 449 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.055 _atom_site.Cartn_y -14.492 _atom_site.Cartn_z 7.522 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 221 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #