data_5MXB # _model_server_result.job_id j_iZIgQsu527XRzsC0cx9A _model_server_result.datetime_utc '2024-11-23 20:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":222}' # _entry.id 5MXB # _exptl.entry_id 5MXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MXB _cell.length_a 74.469 _cell.length_b 74.469 _cell.length_c 67.11 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 U N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 31 A PRO 31 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A O VAL 34 A VAL 34 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A O ILE 37 A ILE 37 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 V NA NA . A NA 221 1_555 X O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc5 V NA NA . A NA 221 1_555 X O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc6 V NA NA . A NA 221 1_555 X O HOH . A HOH 379 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C13 H16 N2 O2' _chem_comp.formula_weight 232.278 _chem_comp.id ML1 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Melatonin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 ML1 sing 205 n n C1 N1 ML1 sing 206 n n C1 H11 ML1 sing 207 n n C1 H12A ML1 sing 208 n n C2 C7 ML1 doub 209 n y C2 H2 ML1 sing 210 n n C3 H31 ML1 sing 211 n n C3 H32 ML1 sing 212 n n C3 H33 ML1 sing 213 n n C4 N1 ML1 sing 214 n n C5 C4 ML1 sing 215 n n C5 H51 ML1 sing 216 n n C5 H52 ML1 sing 217 n n C5 H53 ML1 sing 218 n n C6 H61 ML1 sing 219 n n C6 H62 ML1 sing 220 n n C8 C9 ML1 sing 221 n y C8 C7 ML1 sing 222 n y C9 H9 ML1 sing 223 n n C12 C11 ML1 doub 224 n y C12 C13 ML1 sing 225 n y C12 H12 ML1 sing 226 n n C13 C8 ML1 doub 227 n y C7 C6 ML1 sing 228 n n C10 O1 ML1 sing 229 n n C10 C9 ML1 doub 230 n y C11 C10 ML1 sing 231 n y C11 H111 ML1 sing 232 n n N1 HN1 ML1 sing 233 n n N2 C13 ML1 sing 234 n y N2 C2 ML1 sing 235 n y O1 C3 ML1 sing 236 n n O2 C4 ML1 doub 237 n n N2 H16 ML1 sing 238 n n # _atom_sites.entry_id 5MXB _atom_sites.fract_transf_matrix[1][1] 0.013428 _atom_sites.fract_transf_matrix[1][2] 0.007753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 201 177 UNL UNL . C 2 UNL A 1 202 178 UNL UNL . D 2 UNL A 1 203 180 UNL UNL . E 2 UNL A 1 204 181 UNL UNL . F 2 UNL A 1 205 182 UNL UNL . G 2 UNL A 1 206 183 UNL UNL . H 2 UNL A 1 207 184 UNL UNL . I 2 UNL A 1 208 185 UNL UNL . J 2 UNL A 1 209 186 UNL UNL . K 2 UNL A 1 210 187 UNL UNL . L 2 UNL A 1 211 188 UNL UNL . M 2 UNL A 1 212 190 UNL UNL . N 2 UNL A 1 213 191 UNL UNL . O 2 UNL A 1 214 192 UNL UNL . P 2 UNL A 1 215 193 UNL UNL . Q 2 UNL A 1 216 194 UNL UNL . R 2 UNL A 1 217 195 UNL UNL . S 2 UNL A 1 218 196 UNL UNL . T 2 UNL A 1 219 197 UNL UNL . U 3 ML1 A 1 220 1 ML1 ML1 . V 4 NA A 1 221 1 NA NA . W 3 ML1 A 1 222 1 ML1 ML1 . X 5 HOH A 1 301 146 HOH HOH . X 5 HOH A 2 302 48 HOH HOH . X 5 HOH A 3 303 72 HOH HOH . X 5 HOH A 4 304 158 HOH HOH . X 5 HOH A 5 305 34 HOH HOH . X 5 HOH A 6 306 2 HOH HOH . X 5 HOH A 7 307 143 HOH HOH . X 5 HOH A 8 308 60 HOH HOH . X 5 HOH A 9 309 154 HOH HOH . X 5 HOH A 10 310 23 HOH HOH . X 5 HOH A 11 311 126 HOH HOH . X 5 HOH A 12 312 175 HOH HOH . X 5 HOH A 13 313 104 HOH HOH . X 5 HOH A 14 314 129 HOH HOH . X 5 HOH A 15 315 66 HOH HOH . X 5 HOH A 16 316 5 HOH HOH . X 5 HOH A 17 317 63 HOH HOH . X 5 HOH A 18 318 161 HOH HOH . X 5 HOH A 19 319 12 HOH HOH . X 5 HOH A 20 320 89 HOH HOH . X 5 HOH A 21 321 167 HOH HOH . X 5 HOH A 22 322 22 HOH HOH . X 5 HOH A 23 323 53 HOH HOH . X 5 HOH A 24 324 101 HOH HOH . X 5 HOH A 25 325 92 HOH HOH . X 5 HOH A 26 326 36 HOH HOH . X 5 HOH A 27 327 132 HOH HOH . X 5 HOH A 28 328 153 HOH HOH . X 5 HOH A 29 329 7 HOH HOH . X 5 HOH A 30 330 8 HOH HOH . X 5 HOH A 31 331 124 HOH HOH . X 5 HOH A 32 332 166 HOH HOH . X 5 HOH A 33 333 21 HOH HOH . X 5 HOH A 34 334 38 HOH HOH . X 5 HOH A 35 335 68 HOH HOH . X 5 HOH A 36 336 76 HOH HOH . X 5 HOH A 37 337 176 HOH HOH . X 5 HOH A 38 338 133 HOH HOH . X 5 HOH A 39 339 37 HOH HOH . X 5 HOH A 40 340 10 HOH HOH . X 5 HOH A 41 341 45 HOH HOH . X 5 HOH A 42 342 62 HOH HOH . X 5 HOH A 43 343 163 HOH HOH . X 5 HOH A 44 344 9 HOH HOH . X 5 HOH A 45 345 15 HOH HOH . X 5 HOH A 46 346 49 HOH HOH . X 5 HOH A 47 347 54 HOH HOH . X 5 HOH A 48 348 61 HOH HOH . X 5 HOH A 49 349 88 HOH HOH . X 5 HOH A 50 350 47 HOH HOH . X 5 HOH A 51 351 136 HOH HOH . X 5 HOH A 52 352 77 HOH HOH . X 5 HOH A 53 353 55 HOH HOH . X 5 HOH A 54 354 17 HOH HOH . X 5 HOH A 55 355 46 HOH HOH . X 5 HOH A 56 356 137 HOH HOH . X 5 HOH A 57 357 50 HOH HOH . X 5 HOH A 58 358 102 HOH HOH . X 5 HOH A 59 359 70 HOH HOH . X 5 HOH A 60 360 82 HOH HOH . X 5 HOH A 61 361 28 HOH HOH . X 5 HOH A 62 362 145 HOH HOH . X 5 HOH A 63 363 33 HOH HOH . X 5 HOH A 64 364 27 HOH HOH . X 5 HOH A 65 365 39 HOH HOH . X 5 HOH A 66 366 35 HOH HOH . X 5 HOH A 67 367 13 HOH HOH . X 5 HOH A 68 368 165 HOH HOH . X 5 HOH A 69 369 90 HOH HOH . X 5 HOH A 70 370 91 HOH HOH . X 5 HOH A 71 371 95 HOH HOH . X 5 HOH A 72 372 123 HOH HOH . X 5 HOH A 73 373 122 HOH HOH . X 5 HOH A 74 374 4 HOH HOH . X 5 HOH A 75 375 11 HOH HOH . X 5 HOH A 76 376 125 HOH HOH . X 5 HOH A 77 377 67 HOH HOH . X 5 HOH A 78 378 78 HOH HOH . X 5 HOH A 79 379 31 HOH HOH . X 5 HOH A 80 380 29 HOH HOH . X 5 HOH A 81 381 30 HOH HOH . X 5 HOH A 82 382 84 HOH HOH . X 5 HOH A 83 383 51 HOH HOH . X 5 HOH A 84 384 128 HOH HOH . X 5 HOH A 85 385 87 HOH HOH . X 5 HOH A 86 386 26 HOH HOH . X 5 HOH A 87 387 1 HOH HOH . X 5 HOH A 88 388 168 HOH HOH . X 5 HOH A 89 389 42 HOH HOH . X 5 HOH A 90 390 24 HOH HOH . X 5 HOH A 91 391 20 HOH HOH . X 5 HOH A 92 392 6 HOH HOH . X 5 HOH A 93 393 69 HOH HOH . X 5 HOH A 94 394 162 HOH HOH . X 5 HOH A 95 395 43 HOH HOH . X 5 HOH A 96 396 138 HOH HOH . X 5 HOH A 97 397 131 HOH HOH . X 5 HOH A 98 398 93 HOH HOH . X 5 HOH A 99 399 44 HOH HOH . X 5 HOH A 100 400 14 HOH HOH . X 5 HOH A 101 401 130 HOH HOH . X 5 HOH A 102 402 3 HOH HOH . X 5 HOH A 103 403 74 HOH HOH . X 5 HOH A 104 404 56 HOH HOH . X 5 HOH A 105 405 135 HOH HOH . X 5 HOH A 106 406 40 HOH HOH . X 5 HOH A 107 407 71 HOH HOH . X 5 HOH A 108 408 16 HOH HOH . X 5 HOH A 109 409 96 HOH HOH . X 5 HOH A 110 410 148 HOH HOH . X 5 HOH A 111 411 80 HOH HOH . X 5 HOH A 112 412 81 HOH HOH . X 5 HOH A 113 413 170 HOH HOH . X 5 HOH A 114 414 59 HOH HOH . X 5 HOH A 115 415 100 HOH HOH . X 5 HOH A 116 416 160 HOH HOH . X 5 HOH A 117 417 164 HOH HOH . X 5 HOH A 118 418 139 HOH HOH . X 5 HOH A 119 419 19 HOH HOH . X 5 HOH A 120 420 64 HOH HOH . X 5 HOH A 121 421 169 HOH HOH . X 5 HOH A 122 422 103 HOH HOH . X 5 HOH A 123 423 149 HOH HOH . X 5 HOH A 124 424 86 HOH HOH . X 5 HOH A 125 425 52 HOH HOH . X 5 HOH A 126 426 32 HOH HOH . X 5 HOH A 127 427 97 HOH HOH . X 5 HOH A 128 428 152 HOH HOH . X 5 HOH A 129 429 99 HOH HOH . X 5 HOH A 130 430 141 HOH HOH . X 5 HOH A 131 431 94 HOH HOH . X 5 HOH A 132 432 75 HOH HOH . X 5 HOH A 133 433 58 HOH HOH . X 5 HOH A 134 434 147 HOH HOH . X 5 HOH A 135 435 73 HOH HOH . X 5 HOH A 136 436 79 HOH HOH . X 5 HOH A 137 437 144 HOH HOH . X 5 HOH A 138 438 41 HOH HOH . X 5 HOH A 139 439 85 HOH HOH . X 5 HOH A 140 440 18 HOH HOH . X 5 HOH A 141 441 150 HOH HOH . X 5 HOH A 142 442 151 HOH HOH . X 5 HOH A 143 443 98 HOH HOH . X 5 HOH A 144 444 65 HOH HOH . X 5 HOH A 145 445 57 HOH HOH . X 5 HOH A 146 446 140 HOH HOH . X 5 HOH A 147 447 83 HOH HOH . X 5 HOH A 148 448 159 HOH HOH . X 5 HOH A 149 449 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ML1 . . . W 3 24.902 -17.982 2.139 1 55.86 ? C1 ML1 222 A 1 HETATM 2 C C2 ML1 . . . W 3 24.435 -18.402 5.874 1 44.48 ? C2 ML1 222 A 1 HETATM 3 C C3 ML1 . . . W 3 19.36 -20.5 1.703 1 36.21 ? C3 ML1 222 A 1 HETATM 4 C C4 ML1 . . . W 3 26.316 -17.595 0.162 1 54.38 ? C4 ML1 222 A 1 HETATM 5 C C5 ML1 . . . W 3 27.256 -16.684 -0.604 1 50.61 ? C5 ML1 222 A 1 HETATM 6 C C6 ML1 . . . W 3 24.818 -17.361 3.517 1 48.78 ? C6 ML1 222 A 1 HETATM 7 C C8 ML1 . . . W 3 22.774 -18.708 4.429 1 47.15 ? C8 ML1 222 A 1 HETATM 8 C C9 ML1 . . . W 3 21.907 -18.756 3.319 1 39.48 ? C9 ML1 222 A 1 HETATM 9 C C12 ML1 . . . W 3 21.113 -19.934 5.759 1 49.5 ? C12 ML1 222 A 1 HETATM 10 C C13 ML1 . . . W 3 22.36 -19.296 5.642 1 43.14 ? C13 ML1 222 A 1 HETATM 11 C C7 ML1 . . . W 3 24.085 -18.135 4.572 1 40.65 ? C7 ML1 222 A 1 HETATM 12 C C10 ML1 . . . W 3 20.701 -19.38 3.419 1 44 ? C10 ML1 222 A 1 HETATM 13 C C11 ML1 . . . W 3 20.289 -19.942 4.644 1 46.18 ? C11 ML1 222 A 1 HETATM 14 N N1 ML1 . . . W 3 25.606 -17.109 1.188 1 60.66 ? N1 ML1 222 A 1 HETATM 15 N N2 ML1 . . . W 3 23.4 -19.09 6.532 1 43.88 ? N2 ML1 222 A 1 HETATM 16 O O1 ML1 . . . W 3 19.814 -19.364 2.312 1 40.68 ? O1 ML1 222 A 1 HETATM 17 O O2 ML1 . . . W 3 26.266 -18.809 -0.082 1 50.63 ? O2 ML1 222 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #