data_5MXJ # _model_server_result.job_id tLNHPjjCvoSqyVqD8sz24g _model_server_result.datetime_utc '2024-11-24 17:44:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5MXJ # _exptl.entry_id 5MXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MXJ _cell.length_a 137.9 _cell.length_b 137.9 _cell.length_c 132.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 A,B,C,D,E,F,G,H,I 1 3 A,B,C,D,E,F,G,H,I 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -137.9 -137.9 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -137.9 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -137.9 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 422 A HIS 422 1_555 C C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B NE2 HIS 422 B HIS 422 1_555 E C8M FAD . B FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 5MXJ _atom_sites.fract_transf_matrix[1][1] 0.007252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 600 FAD FAD . D 3 GOL A 1 602 3 GOL GOL . E 2 FAD B 1 601 600 FAD FAD . F 3 GOL B 1 602 1 GOL GOL . G 3 GOL B 1 603 2 GOL GOL . H 4 HOH A 1 701 32 HOH HOH . H 4 HOH A 2 702 4 HOH HOH . H 4 HOH A 3 703 44 HOH HOH . H 4 HOH A 4 704 190 HOH HOH . H 4 HOH A 5 705 12 HOH HOH . H 4 HOH A 6 706 17 HOH HOH . H 4 HOH A 7 707 46 HOH HOH . H 4 HOH A 8 708 201 HOH HOH . H 4 HOH A 9 709 25 HOH HOH . H 4 HOH A 10 710 30 HOH HOH . H 4 HOH A 11 711 19 HOH HOH . H 4 HOH A 12 712 63 HOH HOH . H 4 HOH A 13 713 27 HOH HOH . H 4 HOH A 14 714 65 HOH HOH . H 4 HOH A 15 715 18 HOH HOH . H 4 HOH A 16 716 155 HOH HOH . H 4 HOH A 17 717 244 HOH HOH . H 4 HOH A 18 718 226 HOH HOH . H 4 HOH A 19 719 38 HOH HOH . H 4 HOH A 20 720 150 HOH HOH . H 4 HOH A 21 721 215 HOH HOH . H 4 HOH A 22 722 59 HOH HOH . H 4 HOH A 23 723 20 HOH HOH . H 4 HOH A 24 724 36 HOH HOH . H 4 HOH A 25 725 135 HOH HOH . H 4 HOH A 26 726 132 HOH HOH . H 4 HOH A 27 727 1 HOH HOH . H 4 HOH A 28 728 58 HOH HOH . H 4 HOH A 29 729 9 HOH HOH . H 4 HOH A 30 730 174 HOH HOH . H 4 HOH A 31 731 152 HOH HOH . H 4 HOH A 32 732 160 HOH HOH . H 4 HOH A 33 733 76 HOH HOH . H 4 HOH A 34 734 26 HOH HOH . H 4 HOH A 35 735 37 HOH HOH . H 4 HOH A 36 736 49 HOH HOH . H 4 HOH A 37 737 128 HOH HOH . H 4 HOH A 38 738 129 HOH HOH . H 4 HOH A 39 739 47 HOH HOH . H 4 HOH A 40 740 149 HOH HOH . H 4 HOH A 41 741 220 HOH HOH . H 4 HOH A 42 742 120 HOH HOH . H 4 HOH A 43 743 91 HOH HOH . H 4 HOH A 44 744 11 HOH HOH . H 4 HOH A 45 745 103 HOH HOH . H 4 HOH A 46 746 177 HOH HOH . H 4 HOH A 47 747 137 HOH HOH . H 4 HOH A 48 748 167 HOH HOH . H 4 HOH A 49 749 56 HOH HOH . H 4 HOH A 50 750 48 HOH HOH . H 4 HOH A 51 751 183 HOH HOH . H 4 HOH A 52 752 71 HOH HOH . H 4 HOH A 53 753 175 HOH HOH . H 4 HOH A 54 754 43 HOH HOH . H 4 HOH A 55 755 163 HOH HOH . H 4 HOH A 56 756 51 HOH HOH . H 4 HOH A 57 757 15 HOH HOH . H 4 HOH A 58 758 108 HOH HOH . H 4 HOH A 59 759 60 HOH HOH . H 4 HOH A 60 760 79 HOH HOH . H 4 HOH A 61 761 180 HOH HOH . H 4 HOH A 62 762 127 HOH HOH . H 4 HOH A 63 763 148 HOH HOH . H 4 HOH A 64 764 234 HOH HOH . H 4 HOH A 65 765 250 HOH HOH . H 4 HOH A 66 766 227 HOH HOH . H 4 HOH A 67 767 170 HOH HOH . H 4 HOH A 68 768 72 HOH HOH . H 4 HOH A 69 769 110 HOH HOH . H 4 HOH A 70 770 236 HOH HOH . H 4 HOH A 71 771 181 HOH HOH . H 4 HOH A 72 772 176 HOH HOH . H 4 HOH A 73 773 173 HOH HOH . H 4 HOH A 74 774 259 HOH HOH . H 4 HOH A 75 775 171 HOH HOH . H 4 HOH A 76 776 221 HOH HOH . H 4 HOH A 77 777 104 HOH HOH . H 4 HOH A 78 778 169 HOH HOH . H 4 HOH A 79 779 97 HOH HOH . H 4 HOH A 80 780 109 HOH HOH . H 4 HOH A 81 781 200 HOH HOH . H 4 HOH A 82 782 166 HOH HOH . H 4 HOH A 83 783 92 HOH HOH . H 4 HOH A 84 784 251 HOH HOH . H 4 HOH A 85 785 229 HOH HOH . H 4 HOH A 86 786 87 HOH HOH . H 4 HOH A 87 787 16 HOH HOH . H 4 HOH A 88 788 75 HOH HOH . H 4 HOH A 89 789 247 HOH HOH . H 4 HOH A 90 790 125 HOH HOH . H 4 HOH A 91 791 213 HOH HOH . H 4 HOH A 92 792 257 HOH HOH . H 4 HOH A 93 793 136 HOH HOH . H 4 HOH A 94 794 39 HOH HOH . H 4 HOH A 95 795 260 HOH HOH . H 4 HOH A 96 796 41 HOH HOH . H 4 HOH A 97 797 80 HOH HOH . H 4 HOH A 98 798 253 HOH HOH . H 4 HOH A 99 799 62 HOH HOH . H 4 HOH A 100 800 158 HOH HOH . H 4 HOH A 101 801 182 HOH HOH . H 4 HOH A 102 802 222 HOH HOH . H 4 HOH A 103 803 123 HOH HOH . H 4 HOH A 104 804 131 HOH HOH . H 4 HOH A 105 805 162 HOH HOH . H 4 HOH A 106 806 90 HOH HOH . H 4 HOH A 107 807 207 HOH HOH . H 4 HOH A 108 808 178 HOH HOH . H 4 HOH A 109 809 116 HOH HOH . H 4 HOH A 110 810 57 HOH HOH . H 4 HOH A 111 811 219 HOH HOH . H 4 HOH A 112 812 168 HOH HOH . H 4 HOH A 113 813 242 HOH HOH . H 4 HOH A 114 814 198 HOH HOH . H 4 HOH A 115 815 210 HOH HOH . H 4 HOH A 116 816 81 HOH HOH . H 4 HOH A 117 817 154 HOH HOH . H 4 HOH A 118 818 237 HOH HOH . H 4 HOH A 119 819 161 HOH HOH . H 4 HOH A 120 820 218 HOH HOH . H 4 HOH A 121 821 119 HOH HOH . H 4 HOH A 122 822 172 HOH HOH . H 4 HOH A 123 823 83 HOH HOH . H 4 HOH A 124 824 118 HOH HOH . H 4 HOH A 125 825 112 HOH HOH . H 4 HOH A 126 826 117 HOH HOH . H 4 HOH A 127 827 243 HOH HOH . H 4 HOH A 128 828 248 HOH HOH . H 4 HOH A 129 829 98 HOH HOH . H 4 HOH A 130 830 113 HOH HOH . H 4 HOH A 131 831 246 HOH HOH . I 4 HOH B 1 701 102 HOH HOH . I 4 HOH B 2 702 2 HOH HOH . I 4 HOH B 3 703 153 HOH HOH . I 4 HOH B 4 704 40 HOH HOH . I 4 HOH B 5 705 191 HOH HOH . I 4 HOH B 6 706 197 HOH HOH . I 4 HOH B 7 707 45 HOH HOH . I 4 HOH B 8 708 151 HOH HOH . I 4 HOH B 9 709 196 HOH HOH . I 4 HOH B 10 710 239 HOH HOH . I 4 HOH B 11 711 144 HOH HOH . I 4 HOH B 12 712 141 HOH HOH . I 4 HOH B 13 713 142 HOH HOH . I 4 HOH B 14 714 122 HOH HOH . I 4 HOH B 15 715 146 HOH HOH . I 4 HOH B 16 716 187 HOH HOH . I 4 HOH B 17 717 21 HOH HOH . I 4 HOH B 18 718 54 HOH HOH . I 4 HOH B 19 719 34 HOH HOH . I 4 HOH B 20 720 143 HOH HOH . I 4 HOH B 21 721 33 HOH HOH . I 4 HOH B 22 722 74 HOH HOH . I 4 HOH B 23 723 145 HOH HOH . I 4 HOH B 24 724 14 HOH HOH . I 4 HOH B 25 725 105 HOH HOH . I 4 HOH B 26 726 50 HOH HOH . I 4 HOH B 27 727 233 HOH HOH . I 4 HOH B 28 728 28 HOH HOH . I 4 HOH B 29 729 179 HOH HOH . I 4 HOH B 30 730 82 HOH HOH . I 4 HOH B 31 731 7 HOH HOH . I 4 HOH B 32 732 228 HOH HOH . I 4 HOH B 33 733 10 HOH HOH . I 4 HOH B 34 734 64 HOH HOH . I 4 HOH B 35 735 139 HOH HOH . I 4 HOH B 36 736 156 HOH HOH . I 4 HOH B 37 737 241 HOH HOH . I 4 HOH B 38 738 35 HOH HOH . I 4 HOH B 39 739 189 HOH HOH . I 4 HOH B 40 740 208 HOH HOH . I 4 HOH B 41 741 6 HOH HOH . I 4 HOH B 42 742 245 HOH HOH . I 4 HOH B 43 743 42 HOH HOH . I 4 HOH B 44 744 85 HOH HOH . I 4 HOH B 45 745 73 HOH HOH . I 4 HOH B 46 746 224 HOH HOH . I 4 HOH B 47 747 3 HOH HOH . I 4 HOH B 48 748 13 HOH HOH . I 4 HOH B 49 749 67 HOH HOH . I 4 HOH B 50 750 24 HOH HOH . I 4 HOH B 51 751 206 HOH HOH . I 4 HOH B 52 752 256 HOH HOH . I 4 HOH B 53 753 238 HOH HOH . I 4 HOH B 54 754 164 HOH HOH . I 4 HOH B 55 755 8 HOH HOH . I 4 HOH B 56 756 134 HOH HOH . I 4 HOH B 57 757 195 HOH HOH . I 4 HOH B 58 758 147 HOH HOH . I 4 HOH B 59 759 252 HOH HOH . I 4 HOH B 60 760 53 HOH HOH . I 4 HOH B 61 761 84 HOH HOH . I 4 HOH B 62 762 121 HOH HOH . I 4 HOH B 63 763 209 HOH HOH . I 4 HOH B 64 764 249 HOH HOH . I 4 HOH B 65 765 93 HOH HOH . I 4 HOH B 66 766 185 HOH HOH . I 4 HOH B 67 767 214 HOH HOH . I 4 HOH B 68 768 29 HOH HOH . I 4 HOH B 69 769 231 HOH HOH . I 4 HOH B 70 770 94 HOH HOH . I 4 HOH B 71 771 192 HOH HOH . I 4 HOH B 72 772 232 HOH HOH . I 4 HOH B 73 773 115 HOH HOH . I 4 HOH B 74 774 88 HOH HOH . I 4 HOH B 75 775 77 HOH HOH . I 4 HOH B 76 776 23 HOH HOH . I 4 HOH B 77 777 199 HOH HOH . I 4 HOH B 78 778 52 HOH HOH . I 4 HOH B 79 779 106 HOH HOH . I 4 HOH B 80 780 99 HOH HOH . I 4 HOH B 81 781 203 HOH HOH . I 4 HOH B 82 782 202 HOH HOH . I 4 HOH B 83 783 31 HOH HOH . I 4 HOH B 84 784 188 HOH HOH . I 4 HOH B 85 785 223 HOH HOH . I 4 HOH B 86 786 124 HOH HOH . I 4 HOH B 87 787 111 HOH HOH . I 4 HOH B 88 788 78 HOH HOH . I 4 HOH B 89 789 96 HOH HOH . I 4 HOH B 90 790 130 HOH HOH . I 4 HOH B 91 791 68 HOH HOH . I 4 HOH B 92 792 70 HOH HOH . I 4 HOH B 93 793 204 HOH HOH . I 4 HOH B 94 794 22 HOH HOH . I 4 HOH B 95 795 255 HOH HOH . I 4 HOH B 96 796 5 HOH HOH . I 4 HOH B 97 797 258 HOH HOH . I 4 HOH B 98 798 86 HOH HOH . I 4 HOH B 99 799 107 HOH HOH . I 4 HOH B 100 800 133 HOH HOH . I 4 HOH B 101 801 100 HOH HOH . I 4 HOH B 102 802 89 HOH HOH . I 4 HOH B 103 803 211 HOH HOH . I 4 HOH B 104 804 186 HOH HOH . I 4 HOH B 105 805 240 HOH HOH . I 4 HOH B 106 806 225 HOH HOH . I 4 HOH B 107 807 66 HOH HOH . I 4 HOH B 108 808 138 HOH HOH . I 4 HOH B 109 809 55 HOH HOH . I 4 HOH B 110 810 205 HOH HOH . I 4 HOH B 111 811 126 HOH HOH . I 4 HOH B 112 812 230 HOH HOH . I 4 HOH B 113 813 254 HOH HOH . I 4 HOH B 114 814 69 HOH HOH . I 4 HOH B 115 815 216 HOH HOH . I 4 HOH B 116 816 140 HOH HOH . I 4 HOH B 117 817 157 HOH HOH . I 4 HOH B 118 818 61 HOH HOH . I 4 HOH B 119 819 114 HOH HOH . I 4 HOH B 120 820 165 HOH HOH . I 4 HOH B 121 821 235 HOH HOH . I 4 HOH B 122 822 101 HOH HOH . I 4 HOH B 123 823 159 HOH HOH . I 4 HOH B 124 824 184 HOH HOH . I 4 HOH B 125 825 217 HOH HOH . I 4 HOH B 126 826 212 HOH HOH . I 4 HOH B 127 827 95 HOH HOH . I 4 HOH B 128 828 193 HOH HOH . I 4 HOH B 129 829 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -33.919 -28.555 10.043 1 58.47 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 -34.105 -29.979 10.027 1 60.35 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 -33.593 -28.029 11.445 1 57.03 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 -33.38 -26.606 11.443 1 52.88 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 -34.693 -28.35 12.441 1 58.05 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 -34.108 -28.221 13.738 1 57.43 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #